dr. M.S. (Matthijs) Berends
5f3a7694aa
microorganisms update, added Salmonella groups
2022-12-16 16:10:43 +01:00
dr. M.S. (Matthijs) Berends
8da2467209
updated taxonomy
2022-12-12 00:14:56 +01:00
dr. M.S. (Matthijs) Berends
eed1c14b96
website update
2022-12-11 11:44:29 +01:00
dr. M.S. (Matthijs) Berends
b1ead9c0fe
doc update
2022-12-10 10:09:57 +01:00
dr. M.S. (Matthijs) Berends
56dad34e68
update prevalence with new phyla
2022-12-09 13:37:08 +01:00
dr. M.S. (Matthijs) Berends
510140fc55
Updated mo_gramstain() to reflect current taxonomy, fixes #83
2022-12-09 10:30:25 +01:00
dr. M.S. (Matthijs) Berends
31fb81c382
revised as.rsi(), fix for mdro()
2022-11-24 20:29:00 +01:00
dr. M.S. (Matthijs) Berends
f6862a139d
expert rules 12.0
2022-11-14 15:20:39 +01:00
dr. M.S. (Matthijs) Berends
7ca44fb756
cleanup and new intro logo
2022-11-13 13:44:25 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support ( #77 )
2022-11-13 08:46:10 +01:00
dr. M.S. (Matthijs) Berends
2d90218305
documentation fix
2022-11-05 12:06:40 +01:00
dr. M.S. (Matthijs) Berends
8dc94a9eda
documentation fix
2022-11-05 09:31:19 +01:00
dr. M.S. (Matthijs) Berends
3b652983b7
documentation fix
2022-11-05 08:18:06 +01:00
dr. M.S. (Matthijs) Berends
9444ed6d1d
fix antibiotics error
2022-10-30 21:05:46 +01:00
dr. M.S. (Matthijs) Berends
d40e0ef20b
completely updated antibiotics
2022-10-30 14:31:45 +01:00
dr. M.S. (Matthijs) Berends
3d9faf89cf
ATC and DDD update
2022-10-29 19:01:23 +02:00
dr. M.S. (Matthijs) Berends
6ad7857d39
fix missing R breakpoints
2022-10-29 14:15:23 +02:00
dr. M.S. (Matthijs) Berends
c2801ba7a1
new rsi_translation
2022-10-22 22:00:15 +02:00
dr. M.S. (Matthijs) Berends
d0b54f640c
Update contributors list
2022-10-21 21:56:54 +02:00
dr. M.S. (Matthijs) Berends
faca6d608a
mean AMR distance
2022-10-21 16:02:14 +02:00
dr. M.S. (Matthijs) Berends
178ab5e5ff
mean AMR distance
2022-10-21 15:59:31 +02:00
dr. M.S. (Matthijs) Berends
4bebba3610
fix for scoped dplyr verbs
2022-10-21 15:13:19 +02:00
dr. M.S. (Matthijs) Berends
aa2c0639d0
add confidence intervals ( fixed #70 ), remove combine_IR
2022-10-20 16:08:01 +02:00
dr. M.S. (Matthijs) Berends
85e2fbe4a3
remove warnings from unit tests
2022-10-19 11:47:57 +02:00
dr. M.S. (Matthijs) Berends
ad68b50ecd
custom ab fix
2022-10-15 15:20:13 +02:00
dr. M.S. (Matthijs) Berends
76bcd3528c
move object assignment to AMR_env
2022-10-14 13:02:50 +02:00
dr. M.S. (Matthijs) Berends
dfae4c7e7d
fast-forward from pull
...
Merge branch 'main' of https://github.com/msberends/AMR into main
# Conflicts:
# DESCRIPTION
# R/add_custom_antimicrobials.R
2022-10-11 10:53:51 +02:00
dr. M.S. (Matthijs) Berends
33227a5d90
support ab selectors for manual AB codes
2022-10-11 10:49:55 +02:00
dr. M.S. (Matthijs) Berends
57d66cd9d0
doc fix
2022-10-10 21:38:39 +02:00
dr. M.S. (Matthijs) Berends
955f9d7020
documentation fix
2022-10-10 21:03:39 +02:00
dr. M.S. (Matthijs) Berends
82e3198315
add add_custom_antimicrobials()
2022-10-10 20:20:39 +02:00
dr. M.S. (Matthijs) Berends
4fe90092c7
fix for NA in as.ab()
2022-10-10 15:44:59 +02:00
dr. M.S. (Matthijs) Berends
43c638d122
add mo_current()
2022-10-10 10:12:08 +02:00
dr. M.S. (Matthijs) Berends
b753b84128
fix for mo type translation
2022-10-06 12:11:51 +02:00
dr. M.S. (Matthijs) Berends
b9342d103e
fix documentation
2022-10-06 11:33:30 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
dr. M.S. (Matthijs) Berends
63fe160322
new rsi_interpretation_history
2022-09-01 15:20:57 +02:00
dr. M.S. (Matthijs) Berends
3fca703fbf
new AMR distance function
2022-08-30 21:48:02 +02:00
dr. M.S. (Matthijs) Berends
fbd5d32541
small fixes
2022-08-29 09:35:36 +02:00
dr. M.S. (Matthijs) Berends
e7af5fc716
fix AMR vignette
2022-08-28 22:38:08 +02:00
dr. M.S. (Matthijs) Berends
4d050aef7c
styled, unit test fix
2022-08-28 10:31:50 +02:00
dr. M.S. (Matthijs) Berends
303d61b473
new tibble export
2022-08-27 20:49:37 +02:00
dr. M.S. (Matthijs) Berends
bdbc112f99
website update
2022-08-21 17:22:34 +02:00
dr. M.S. (Matthijs) Berends
d6676e9443
disk documentation fix
2022-08-21 16:52:09 +02:00
dr. M.S. (Matthijs) Berends
952d16de33
new, automated website
2022-08-21 16:37:20 +02:00
dr. M.S. (Matthijs) Berends
7226b70c3d
update languages
2022-08-20 20:17:14 +02:00
dr. M.S. (Matthijs) Berends
3f2f60ab77
language updates
2022-08-19 12:33:14 +02:00
dr. M.S. (Matthijs) Berends
ab97268f4c
(v1.8.1.9014) add Toxoplasma
2022-08-12 23:27:15 +02:00
dr. M.S. (Matthijs) Berends
7f981e7778
(v1.8.1.9013) add Toxoplasma
2022-06-10 13:15:23 +02:00
dr. M.S. (Matthijs) Berends
b84d647cac
(v1.8.1.9012) update prevalence of some genera
2022-06-03 13:28:55 +02:00
