dr. M.S. (Matthijs) Berends
e601fd259a
test syntax fix
2018-11-01 20:50:10 +01:00
dr. M.S. (Matthijs) Berends
5476fecc73
eucast update
2018-11-01 20:23:33 +01:00
dr. M.S. (Matthijs) Berends
f7687557c9
eucast updates
2018-11-01 17:06:08 +01:00
dr. M.S. (Matthijs) Berends
9cd4ab928a
speed improvement as.mo, freq title
2018-10-31 12:10:49 +01:00
dr. M.S. (Matthijs) Berends
1bf8dc2983
as.mo speedup: assigned to namespace
2018-10-29 17:26:17 +01:00
dr. M.S. (Matthijs) Berends
707aa20a37
fixes
2018-10-23 14:59:36 +02:00
dr. M.S. (Matthijs) Berends
7997de6a6d
mdro and 1st isolate improvements
2018-10-23 11:15:05 +02:00
dr. M.S. (Matthijs) Berends
c2a93b46db
breaks param, tidyr dep change, freq markdown
2018-10-22 12:32:59 +02:00
dr. M.S. (Matthijs) Berends
ec15b82fd6
param header for freq
2018-10-19 21:52:08 +02:00
dr. M.S. (Matthijs) Berends
86b03577a7
fix for as.mo, added also_single_tested
2018-10-19 13:53:31 +02:00
dr. M.S. (Matthijs) Berends
b464dd524a
new verbose
2018-10-19 00:17:03 +02:00
dr. M.S. (Matthijs) Berends
0ef91be3ac
param rules for EUCAST
2018-10-18 12:10:10 +02:00
dr. M.S. (Matthijs) Berends
693f64bdbf
new EUCAST rules: clinical breakpoints
2018-10-17 17:32:34 +02:00
dr. M.S. (Matthijs) Berends
d5a41de711
parameter combine_IR
2018-10-16 09:59:31 +02:00
dr. M.S. (Matthijs) Berends
5b5b95a47b
count_all and some fixes
2018-10-12 16:35:18 +02:00
dr. M.S. (Matthijs) Berends
95c9fdc552
CRAN fixes for release 0.4.0
...
https://cran.r-project.org/web/checks/check_results_AMR.html
2018-10-09 13:53:33 +02:00
dr. M.S. (Matthijs) Berends
ed17db0263
renamed year columns to ref
2018-10-01 14:44:40 +02:00
dr. M.S. (Matthijs) Berends
3119a221e5
authors from ITIS, diff for freq
2018-10-01 11:39:43 +02:00
dr. M.S. (Matthijs) Berends
92c9cc2608
diff for freq, fix for mo_shortname
2018-09-29 21:54:32 +02:00
dr. M.S. (Matthijs) Berends
a6aa9e95fb
completed old taxonomic names
2018-09-28 20:13:13 +02:00
dr. M.S. (Matthijs) Berends
768fe17324
removed clipboard functions as it violated CRAN policies
2018-09-28 16:05:18 +02:00
dr. M.S. (Matthijs) Berends
2b0080995e
speed improvement for as.mo, more old taxonomic names
2018-09-27 23:23:48 +02:00
dr. M.S. (Matthijs) Berends
450992baea
new: 1680 old taxonomic names
2018-09-25 16:44:40 +02:00
dr. M.S. (Matthijs) Berends
9c566585b0
first inclusion of ITIS data
2018-09-24 23:33:29 +02:00
dr. M.S. (Matthijs) Berends
5d80cef338
added taxonomic data from ITIS
2018-09-17 20:53:32 +02:00
dr. M.S. (Matthijs) Berends
db14781593
add labels_rsi_count
2018-09-16 22:11:17 +02:00
dr. M.S. (Matthijs) Berends
b792a2754e
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
2018-09-16 16:43:29 +02:00
dr. M.S. (Matthijs) Berends
d049ec9e69
ggplot2_rsi fix
2018-09-13 14:48:34 +02:00
dr. M.S. (Matthijs) Berends
cb0d74a4f0
support for French and Italian, added quote to freq
2018-09-10 15:45:25 +02:00
dr. M.S. (Matthijs) Berends
b83e6a9380
algoritm improvement, removed all Catabacter except for C. hongkongensis
2018-09-10 11:40:54 +02:00
dr. M.S. (Matthijs) Berends
4816419f0c
AI improvements for microorganisms
2018-09-09 12:11:44 +02:00
dr. M.S. (Matthijs) Berends
26f5be0033
support for portuguese, language determination based on system
2018-09-08 16:06:47 +02:00
dr. M.S. (Matthijs) Berends
de36b0be23
fix for empty values in mo_property
2018-09-05 12:21:27 +02:00
dr. M.S. (Matthijs) Berends
e39a9a8b05
added mo_shortname
2018-09-05 10:51:46 +02:00
dr. M.S. (Matthijs) Berends
790bd1622d
added vanA to vanE positive Enterococci
2018-09-05 09:49:19 +02:00
dr. M.S. (Matthijs) Berends
b388e3fee7
Support for German and Spanish microorganism properties, cleanup
2018-09-04 11:33:30 +02:00
dr. M.S. (Matthijs) Berends
75fe4d401f
new MOs, cleanup
2018-09-01 21:19:46 +02:00
dr. M.S. (Matthijs) Berends
5965d3c794
replaced bactid by mo
2018-08-31 13:36:19 +02:00
dr. M.S. (Matthijs) Berends
98ff131680
support for older versions of ggplot2
2018-08-29 16:39:28 +02:00
dr. M.S. (Matthijs) Berends
d654444c8e
re added nrow
2018-08-29 16:35:32 +02:00
dr. M.S. (Matthijs) Berends
d9e68e0a50
ggplot_rsi example update, more unit tests
2018-08-29 16:25:57 +02:00
dr. M.S. (Matthijs) Berends
029157b3be
163 new trade names, added ab_tradenames
2018-08-29 12:27:37 +02:00
dr. M.S. (Matthijs) Berends
972fc4f6c7
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
2018-08-28 13:51:13 +02:00
dr. M.S. (Matthijs) Berends
2acdb1981c
atc and bactid functions, readme update
2018-08-25 22:01:14 +02:00
dr. M.S. (Matthijs) Berends
a100d07da6
removed ratio, better rsi_calc, update for freq
2018-08-24 11:08:20 +02:00
dr. M.S. (Matthijs) Berends
febd0ca885
geom_rsi - any parameter
2018-08-23 21:27:15 +02:00
dr. M.S. (Matthijs) Berends
da5379c881
quasiquotation, alpha for geom_rsi
2018-08-23 00:40:36 +02:00
dr. M.S. (Matthijs) Berends
3e87c8f409
count_* functions
2018-08-22 00:02:26 +02:00
dr. M.S. (Matthijs) Berends
1699d7b8b3
better example of grouping variable in ggplot_rsi
2018-08-14 12:07:03 +02:00
dr. M.S. (Matthijs) Berends
59ce1eb1b1
ggplot_rsi improvements
2018-08-13 16:42:37 +02:00
