Commit Graph

155 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 8fda473e49 (v1.5.0.9015) unit test fix, grouped first isolates 2021-02-04 16:48:16 +01:00
dr. M.S. (Matthijs) Berends 2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
dr. M.S. (Matthijs) Berends 331c1f6508 (v1.5.0.9012) ampc_cephalosporin_resistance for I 2021-01-25 21:58:00 +01:00
dr. M.S. (Matthijs) Berends 24eb4453db (v1.5.0.9011) small dosage update 2021-01-24 23:27:11 +01:00
dr. M.S. (Matthijs) Berends 1ba44776a1 (v1.5.0.9008) Internal data sets to pkg, speed for auto col determination 2021-01-22 10:20:41 +01:00
dr. M.S. (Matthijs) Berends 4eab095306 (v1.5.0.9006) major documentation update 2021-01-18 16:57:56 +01:00
dr. M.S. (Matthijs) Berends 7ebc534ccd (v1.5.0.9003) verbose output of mdro() 2021-01-15 22:44:52 +01:00
dr. M.S. (Matthijs) Berends bc00470dca (v1.5.0.9001) more informative argument errors 2021-01-14 14:41:44 +01:00
dr. M.S. (Matthijs) Berends d014955ce0 (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
dr. M.S. (Matthijs) Berends 3b84b8be75 v1.5.0 2021-01-06 11:16:17 +01:00
dr. M.S. (Matthijs) Berends 526f8afb08 (v1.4.0.9052) replaced all sapply's with type-safe vapply's 2020-12-28 22:24:33 +01:00
dr. M.S. (Matthijs) Berends ed198916bf (v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants 2020-12-27 14:23:11 +01:00
dr. M.S. (Matthijs) Berends 8b52f9b1be (v1.4.0.9047) unit tests 2020-12-27 00:30:28 +01:00
dr. M.S. (Matthijs) Berends df37584189 (v1.4.0.9044) mo tibble printing, mo_shortname() fix 2020-12-24 23:29:10 +01:00
dr. M.S. (Matthijs) Berends 128ebcfd62 (v1.4.0.9043) documentation update 2020-12-22 00:51:17 +01:00
dr. M.S. (Matthijs) Berends 1faa816090 (v1.4.0.9040) LA-MRSA / CA-MRSA 2020-12-16 16:18:53 +01:00
dr. M.S. (Matthijs) Berends ac22b8d5c1 (v1.4.0.9038) docu update 2020-12-13 13:44:04 +01:00
dr. M.S. (Matthijs) Berends 2edd3339db (v1.4.0.9036) more unit tests 2020-12-11 12:17:23 +01:00
dr. M.S. (Matthijs) Berends 23ddc6004b (v1.4.0.9035) eucast_rules fix 2020-12-11 09:05:03 +01:00
dr. M.S. (Matthijs) Berends 1bdb136b3a (v1.4.0.9032) auto-data guessing for functions 2020-12-07 16:06:42 +01:00
dr. M.S. (Matthijs) Berends fdf29e6c5b (v1.4.0.9031) as.ab() fix 2020-12-03 22:30:14 +01:00
dr. M.S. (Matthijs) Berends e03b3c96d3 (v1.4.0.9030) as.mo() fix for known lab codes 2020-12-03 16:59:04 +01:00
dr. M.S. (Matthijs) Berends 9666b78ea7 (v1.4.0.9019) documentation update 2020-11-12 11:07:23 +01:00
dr. M.S. (Matthijs) Berends 01d9522434 (v1.4.0.9017) stringsAsFactors definitions 2020-11-11 16:49:27 +01:00
dr. M.S. (Matthijs) Berends 15c732703d (v1.4.0.9015) bugfix 2020-11-10 16:35:56 +01:00
dr. M.S. (Matthijs) Berends d3b1d33210 (v1.4.0.9013) is_gram_negative/positive update 2020-11-09 13:07:02 +01:00
dr. M.S. (Matthijs) Berends 5a607abb36 (v1.4.0.9011) message formatting 2020-10-27 15:56:51 +01:00
dr. M.S. (Matthijs) Berends 4e9ccb4435 (v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening 2020-10-19 17:09:19 +02:00
dr. M.S. (Matthijs) Berends 28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00
dr. M.S. (Matthijs) Berends baf510183c (v1.3.0.9038) prefinal 1.4.0 2020-10-04 19:26:43 +02:00
dr. M.S. (Matthijs) Berends 4e0374af29 (v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup 2020-09-29 23:35:46 +02:00
dr. M.S. (Matthijs) Berends 68e6e1e329 (v1.3.0.9034) eucast_rules summary fix 2020-09-29 10:40:25 +02:00
dr. M.S. (Matthijs) Berends 36ec8b0d81 (v1.3.0.9033) skimr fix 2020-09-28 11:00:59 +02:00
dr. M.S. (Matthijs) Berends 9667c2994f (v1.3.0.9029) eucast rules fix, unique() 2020-09-25 14:44:50 +02:00
dr. M.S. (Matthijs) Berends 1d982a82b4 (v1.3.0.9028) eucast fix 2020-09-24 12:38:13 +02:00
dr. M.S. (Matthijs) Berends 027215ed94 (v1.3.0.9027) unit tests 2020-09-24 00:50:23 +02:00
dr. M.S. (Matthijs) Berends c19095a3d5 (v1.3.0.9026) eucast expert rules 3.2 2020-09-24 00:30:11 +02:00
dr. M.S. (Matthijs) Berends 4e40e42011 (v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix 2020-09-18 16:05:53 +02:00
dr. M.S. (Matthijs) Berends ab60f613aa (v1.3.0.9020) fix for uncertainty in as.mo() 2020-09-14 19:41:48 +02:00
dr. M.S. (Matthijs) Berends 9b8db57c65 (v1.3.0.9008) also tibble printing for ab 2020-08-26 15:34:12 +02:00
dr. M.S. (Matthijs) Berends 5e45fdcf2a (v1.3.0.9007) tibble printing 2020-08-26 11:33:54 +02:00
dr. M.S. (Matthijs) Berends c8c8bb4e3a (v1.3.0.9006) website update 2020-08-21 11:40:13 +02:00
dr. M.S. (Matthijs) Berends 08d62bb5d5 (v1.3.0.9002) intrinsic_resistant data set 2020-08-14 13:36:10 +02:00
dr. M.S. (Matthijs) Berends 6ab468362d (v1.2.0.9034) code cleaning 2020-07-13 09:17:24 +02:00
dr. M.S. (Matthijs) Berends 76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
dr. M.S. (Matthijs) Berends 93a158aebd (v1.2.0.9011) mo_domain(), improved error handling 2020-06-22 11:18:40 +02:00
dr. M.S. (Matthijs) Berends ac12392da3 (v1.2.0.9008) ab_class improvement 2020-06-17 15:14:37 +02:00
dr. M.S. (Matthijs) Berends 40221e5244 (v1.2.0.9003) better terminal colour support 2020-06-05 13:56:05 +02:00
dr. M.S. (Matthijs) Berends 02d07b9fb3 (v1.2.0.9000) eucast_rules() fix for tibbles 2020-06-02 16:05:56 +02:00
dr. M.S. (Matthijs) Berends 86d44054f0 (v1.1.0.9020) updated taxonomy 2020-05-27 16:37:49 +02:00
dr. M.S. (Matthijs) Berends 1b1e243d14 (v1.1.0.9016) small fix 2020-05-21 12:28:57 +02:00
dr. M.S. (Matthijs) Berends 743f9a5364 (v1.1.0.9015) new default eucast_rules 2020-05-20 12:00:17 +02:00
dr. M.S. (Matthijs) Berends d659c9baef (v1.1.0.9010) lose dependencies 2020-05-18 11:09:02 +02:00
dr. M.S. (Matthijs) Berends f68d71a5e0 (v1.1.0.9007) lose dependencies 2020-05-16 21:40:50 +02:00
dr. M.S. (Matthijs) Berends 7f3da74b17 (v1.1.0.9004) lose dependencies 2020-05-16 13:05:47 +02:00
dr. M.S. (Matthijs) Berends ea32e9916a (v1.0.0.9005) info printing only in interactive mode 2020-02-21 21:13:38 +01:00
dr. M.S. (Matthijs) Berends 5e2b294351 (v0.9.0.9026) update documentation 2020-02-17 14:38:01 +01:00
dr. M.S. (Matthijs) Berends 9b8b02960e (v0.9.0.9023) EUCAST 2020 guidelines 2020-02-14 19:54:13 +01:00
dr. M.S. (Matthijs) Berends 449d9bde35 (v0.9.0.9012) Support for LOINC codes 2020-01-26 20:20:00 +01:00
dr. M.S. (Matthijs) Berends ced1a7b7fa (v0.9.0.9008) Happy new year! Add lifecycles 2020-01-05 17:22:09 +01:00
dr. M.S. (Matthijs) Berends c5f00f4a9f (v0.8.0.9036) complete documentation rewrite 2019-11-28 22:32:17 +01:00
dr. M.S. (Matthijs) Berends 267320f15f (v0.8.0.9033) antivirals data set, cleanup 2019-11-18 12:10:47 +01:00
dr. M.S. (Matthijs) Berends 09e2730b53 (v0.8.0.9031) as.mo() improvements 2019-11-15 15:25:03 +01:00
dr. M.S. (Matthijs) Berends ef640add2d (v0.8.0.9021) update vignettes 2019-11-09 11:33:22 +01:00
dr. M.S. (Matthijs) Berends e2d05cb1b0 (v0.8.0.9017) keywords update 2019-11-06 14:43:23 +01:00
dr. M.S. (Matthijs) Berends 7ff2ad8188 (v0.8.0.9006) small typos 2019-10-27 00:31:59 +02:00
dr. M.S. (Matthijs) Berends d2e8249edd (v0.8.0.9004) added MDR guideline by Magiorakos et al. 2019-10-26 21:56:41 +02:00
dr. M.S. (Matthijs) Berends 00cdb498a0 (v0.7.1.9102) lintr 2019-10-11 17:21:02 +02:00
dr. M.S. (Matthijs) Berends c8f6b97847 (v0.7.1.9100) bug_drug speed, MIC levels 2019-10-08 22:21:33 +02:00
dr. M.S. (Matthijs) Berends 4e9c4c1b4e (v0.7.1.9096) German guideline for mdro() 2019-10-07 14:32:06 +02:00
dr. M.S. (Matthijs) Berends 3d5692219e (v0.7.1.9094) get_column_abx() improvement 2019-10-06 21:44:08 +02:00
dr. M.S. (Matthijs) Berends 7c069145ac (v0.7.1.9058) as.mo() improvement 2019-08-20 11:40:54 +02:00
dr. M.S. (Matthijs) Berends 1d423cca89 (v0.7.1.9035) cephalosporins and unit tests 2019-08-11 19:07:26 +02:00
dr. M.S. (Matthijs) Berends 6a349bf757 (v0.7.1.9032) eucast_rules() improvements 2019-08-09 14:28:46 +02:00
dr. M.S. (Matthijs) Berends 22a206ffd8 (v0.7.1.9030) eucast_rules() fix 2019-08-08 15:52:07 +02:00
dr. M.S. (Matthijs) Berends 90c874025a (v0.7.1.9027) tibble printing 2019-08-07 15:37:39 +02:00
dr. M.S. (Matthijs) Berends 96b334d7cc website update 2019-08-06 14:46:30 +02:00
dr. M.S. (Matthijs) Berends 3a1f960f89 (v0.7.1.9024) eucast_rules() fix, new MOs 2019-08-06 14:39:22 +02:00
dr. M.S. (Matthijs) Berends 2a62c3d62a (v0.7.1.9018) deps 2019-07-30 13:12:40 +02:00
dr. M.S. (Matthijs) Berends b452de2fe4 (v0.7.1.9010) eucast informative text in verbose mode 2019-07-09 13:36:03 +02:00
dr. M.S. (Matthijs) Berends 65c6702b21 (v0.7.1.9004) atc class removal 2019-06-27 11:57:45 +02:00
dr. M.S. (Matthijs) Berends f02679fb63 (v0.7.0.9001) new pathovars, small fixes 2019-06-07 22:47:37 +02:00
dr. M.S. (Matthijs) Berends 2667fff8a7 (v0.6.1.9050) support staged install 2019-06-01 20:40:49 +02:00
dr. M.S. (Matthijs) Berends 8b5e2b030b added boxplot for (grouped) freq() 2019-05-29 19:56:17 +02:00
dr. M.S. (Matthijs) Berends 60983a1640 added mdr_tb() 2019-05-23 16:58:59 +02:00
dr. M.S. (Matthijs) Berends 07d26cd485 faster determination of abx 2019-05-20 19:12:41 +02:00
dr. M.S. (Matthijs) Berends 4ca00e1868 speed improvement eucast_rules(), support more old MO codes 2019-05-20 12:00:18 +02:00
dr. M.S. (Matthijs) Berends 68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00
dr. M.S. (Matthijs) Berends 461eec9bac cfta streptococci, codecov.yml 2019-04-09 14:59:17 +02:00
dr. M.S. (Matthijs) Berends 51fdc5d6cc self-learning off 2019-04-06 09:38:23 +02:00
dr. M.S. (Matthijs) Berends fbc9191b13 new EUCAST rules algorithm 2019-04-05 18:47:39 +02:00
dr. M.S. (Matthijs) Berends b25f2d6213 v0.6.1 2019-03-28 21:33:28 +01:00
dr. M.S. (Matthijs) Berends 54f8258f8c Catalogue of Life, replaces ITIS 2019-02-18 02:33:37 +01:00
dr. M.S. (Matthijs) Berends ed30312048 mo codes for WHONET 2019-02-08 16:06:54 +01:00
dr. M.S. (Matthijs) Berends f4ff98b470 WHO update, antibiotics update 2019-01-25 13:18:41 +01:00
dr. M.S. (Matthijs) Berends 046d195064 resistance predict 2019-01-15 12:45:24 +01:00
dr. M.S. (Matthijs) Berends 641d866db2 guess_ab_col, benchmarks 2019-01-11 20:37:23 +01:00
dr. M.S. (Matthijs) Berends 193a2d2863 EUCAST update, as.mo bugfix for empty vlaues 2019-01-08 16:23:45 +01:00
dr. M.S. (Matthijs) Berends 80ea555663 guess_ab 2019-01-03 23:56:19 +01:00
dr. M.S. (Matthijs) Berends 6b2d464f8c big website update, licence txt update 2019-01-02 23:24:07 +01:00