1
0
mirror of https://github.com/msberends/AMR.git synced 2024-12-26 18:06:11 +01:00
Commit Graph

424 Commits

Author SHA1 Message Date
e7af5fc716 fix AMR vignette 2022-08-28 22:38:08 +02:00
71db246d5c unit test fix 2022-08-28 19:17:12 +02:00
f781998904 amoxicillin interpretation fix 2022-08-28 11:17:53 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
4cb1db4554 data export 2022-08-27 20:51:26 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
3cef2ea286 restore LFS 2022-08-26 23:21:31 +02:00
3864ab2fb8 Feather and Parquet files 2022-08-26 22:25:15 +02:00
4da32e3d40 set up Git LFS for large files 2022-08-26 14:02:08 +02:00
7226b70c3d update languages 2022-08-20 20:17:14 +02:00
3f2f60ab77 language updates 2022-08-19 12:33:14 +02:00
Anton Mymrikov
4b19c3dc5e
Add Ukrainian translation (#67) 2022-08-18 11:29:18 +02:00
ab97268f4c (v1.8.1.9014) add Toxoplasma 2022-08-12 23:27:15 +02:00
7f981e7778 (v1.8.1.9013) add Toxoplasma 2022-06-10 13:15:23 +02:00
b84d647cac (v1.8.1.9012) update prevalence of some genera 2022-06-03 13:28:55 +02:00
1b84564d36 (v1.8.1.9011) update prevalence of some genera 2022-06-03 12:43:25 +02:00
70a07bad39 (v1.8.1.9010) random when pkg not loaded 2022-05-16 12:52:50 +02:00
2c5bc73ed6 (v1.8.1.9009) random when pkg not loaded 2022-05-16 09:29:46 +02:00
58ed15e7ac (v1.8.1.9008) website update 2022-05-11 10:26:58 +02:00
6de5375256 (v1.8.1.9007) website update 2022-05-11 10:10:31 +02:00
859224e9d0 (v1.8.1.9006) added EUCAST 2022 and CLSI 2022 2022-05-10 21:34:30 +02:00
680e8e7a41 (v1.8.1.9005) as.rsi() fix for EUCAST 2022-05-10 17:01:37 +02:00
d4e22069bc (v1.8.1.9004) fix for table() on MICs 2022-05-09 21:33:27 +02:00
1c891cc90c (v1.8.1.9003) set_mo_source() fix 2022-05-09 20:36:44 +02:00
152db9d1b5 (v1.8.1.9002) fix for table() on MICs 2022-05-09 17:08:40 +02:00
4754848e96 (v1.8.1.9001) update unit tests, fixes #53 2022-04-08 11:02:45 +02:00
7b0f1596bd (v1.8.0.9010) as.mo improvement 2022-03-15 17:35:02 +01:00
1b0983e382 (v1.8.1) prerelease 1.8.1 2022-03-14 16:36:10 +01:00
08d387b5ce (v1.8.0.9005) as.rsi() fix 2022-03-10 19:33:25 +01:00
ad82bb4ce0 (v1.8.0.9004) MIC printing in tibbles 2022-03-03 21:11:02 +01:00
dedbe92322 (v1.8.0.9003) deps update 2022-03-02 23:16:37 +01:00
3b2b2be5f8 (v1.8.0.9002) as.rsi() cleanup, more informative warnings 2022-03-02 15:38:55 +01:00
18e8525d10 (v1.8.0.9001) as.mo improvement, fixes #52 2022-02-26 21:58:23 +01:00
be792cc9eb (v1.8.0.9000) unit tests for R 3.3 2022-02-01 17:08:10 +01:00
f5dcf0ad58 v1.8.0 as accepted by CRAN 2022-01-07 16:27:13 +01:00
25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
75dac113b6 (v1.7.1.9077) skimr support only for newer R versions 2021-12-23 13:38:25 +01:00
d9274bcd0a (v1.7.1.9075) assignment operator 2021-12-14 22:59:27 +01:00
76dee66852 (v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests 2021-12-14 22:39:23 +01:00
bd4bb1d72f (v1.7.1.9073) as.rsi() fix for UTIs 2021-12-14 21:47:14 +01:00
5eef01165e (v1.7.1.9072) as.rsi() fix for UTIs 2021-12-14 12:33:29 +01:00
0cbf8f48b6 (v1.7.1.9071) rsi disk fix 2021-12-13 11:57:34 +01:00
578e7dfee9 (v1.7.1.9070) Better WHONET support 2021-12-13 10:18:28 +01:00
f90e27c1b0 (v1.7.1.9069) CLSI 2021 support 2021-12-12 11:36:58 +01:00
1e66a3daf3 (v1.7.1.9068) new logo, unit tests 2021-12-12 11:07:02 +01:00
56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
5b5f70a103 (v1.7.1.9066) mdro EUCAST v3.3 2021-12-11 15:29:30 +01:00
e0a2634f14 (v1.7.1.9065) unit tests 2021-12-11 15:13:44 +01:00
77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
e18c49ed93 (v1.7.1.9063) not_intrinsic_resistant 2021-12-09 10:48:25 +01:00
e63defe324 (v1.7.1.9062) website update 2021-12-06 11:12:30 +01:00
1fa3fc6af2 (v1.7.1.9061) bugfix set_ab_names 2021-12-05 23:21:59 +01:00
75965124ef (v1.7.1.9060) bugfix set_ab_names 2021-12-05 23:11:10 +01:00
b747036deb (v1.7.1.9059) bugfix set_ab_names 2021-12-05 22:59:06 +01:00
7965468ccd (v1.7.1.9058) vars selection for set_ab_names() 2021-12-05 22:06:45 +01:00
3abe61fd61 (v1.7.1.9057) NAs in get_episode() 2021-12-02 13:32:14 +01:00
5375f75829 (v1.7.1.9056) unit tests 2021-11-29 11:55:18 +01:00
c8698347cb (v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers 2021-11-29 10:38:38 +01:00
694cf5ba77 (v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup 2021-11-28 23:01:26 +01:00
9a2c431e16 (v1.7.1.9053) fortify() methods 2021-11-01 13:51:13 +01:00
91149d6d35 (v1.7.1.9052) eucast-update 2021-10-06 16:22:36 +02:00
37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
8f5e5a3fc2 (v1.7.1.9050) fix for as.mo 2021-10-05 14:00:35 +02:00
2bcf28281d (v1.7.1.9049) unit tests 2021-10-05 09:58:08 +02:00
d1b16ce641 (v1.7.1.9048) unit tests 2021-10-04 10:22:10 +02:00
9b97233be2 (v1.7.1.9046) unit tests 2021-10-03 13:50:52 +02:00
b0c84cce9c (v1.7.1.9045) unit tests 2021-09-29 20:24:02 +02:00
557ce74fd7 (v1.7.1.9044) unit tests 2021-09-29 20:13:52 +02:00
45f597cac5 (v1.7.1.9043) unit tests 2021-09-29 20:10:44 +02:00
e8d3ce05d7 (v1.7.1.9041) new GH actions, branches rename 2021-09-29 16:36:03 +02:00
93a4734b44 (v1.7.1.9040) Support for Danish 2021-09-29 12:12:35 +02:00
5f433d6e5c (v1.7.1.9039) reinitiate all units tests 2021-09-03 13:08:36 +02:00
81a1a432bd (v1.7.1.9038) dplyr grouping fix on windows? 2021-09-01 16:52:55 +02:00
bcab74fb6d (v1.7.1.9037) dplyr grouping fix on windows? 2021-08-31 17:06:44 +02:00
953dfac9e5 (v1.7.1.9036) dplyr grouping fix on windows? 2021-08-30 16:49:46 +02:00
986bd826ee (v1.7.1.9035) dplyr grouping fix on windows? 2021-08-30 15:43:12 +02:00
1daa117e9f (v1.7.1.9033) dplyr grouping fix on windows? 2021-08-30 15:01:32 +02:00
6ca6a3f6df (v1.7.1.9032) dplyr grouping fix on windows? 2021-08-30 14:17:27 +02:00
e6ce25162e (v1.7.1.9031) dplyr grouping fix on windows? 2021-08-30 14:07:46 +02:00
d6a916d70b (v1.7.1.9030) unit test 2021-08-29 23:50:45 +02:00
f0a4d29fe0 (v1.7.1.9029) unit test fix 2021-08-21 10:20:05 +02:00
e4de7f5055 (v1.7.1.9028) fix unit test 2021-08-20 00:08:31 +02:00
41f35c73cd (v1.7.1.9027) fix unit test 2021-08-19 23:56:18 +02:00
2ab21b7af3 (v1.7.1.9026) updated DDDs 2021-08-19 23:43:02 +02:00
1b62bab007 (v1.7.1.9025) unit tests 2021-08-18 23:19:38 +02:00
a44283f998 (v1.7.1.9024) unit tests 2021-08-17 14:34:11 +02:00
a2d249962f (v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47 2021-08-16 21:54:34 +02:00
4e1efd902c (v1.7.1.9022) rely on vctrs for ab selectors 2021-07-23 21:42:11 +02:00
0ec81cc12e (v1.7.1.9021) autoplot generics 2021-07-12 22:12:28 +02:00
6838f03bde (v1.7.1.9020) autoplot generics 2021-07-12 20:24:49 +02:00
fc946564d1 (v1.7.1.9019) Morganella MIC in EUCAST 2021 2021-07-12 12:28:41 +02:00
5ccb330b42 (v1.7.1.9018) translation fix 2021-07-11 13:20:45 +02:00
39d97ab53b (v1.7.1.9017) ab selector error 2021-07-08 23:05:45 +02:00
b228eb1536 (v1.7.1.9016) only_treatable ab selectors 2021-07-08 22:23:28 +02:00
625a6fb304 (v1.7.1.9015) removed S3 taxonomic_name again 2021-07-07 20:34:05 +02:00
ad10693a1a (v1.7.1.9014) rep() for S3 classes 2021-07-06 16:35:14 +02:00
16b4c74d44 (v1.7.1.9013) temp fix for ggplot2 bug #4511 2021-07-04 22:10:46 +02:00
350dbe6a11 (v1.7.1.9012) update unit tests 2021-07-04 20:25:30 +02:00
5b5741f681 (v1.7.1.9011) subsetting taxonomy fix 2021-07-04 15:26:50 +02:00
3bd50710e8 (v1.7.1.9010) fix for count_* and proportion_* 2021-07-04 12:00:41 +02:00
3e26929838 (v1.7.1.9009) fix for ab class selectors 2021-07-03 21:56:53 +02:00
c8491d07f8 (v1.7.1.9008) unit tests 2021-06-23 10:19:38 +02:00
95050ee3e0 (v1.7.1.9007) Updated antibiotics dataset, fixes #41 2021-06-23 10:03:17 +02:00
1dc9d237f6 (v1.7.1.9006) unit tests 2021-06-22 13:09:41 +02:00
d04e83f494 (v1.7.1.9005) ab class selectors for R-3.0 and R-3.1 2021-06-22 12:16:42 +02:00
c44d9392ca (v1.7.1.9004) more extensive unit tests 2021-06-15 10:51:04 +02:00
556bf0014d (v1.7.1.9003) unit test 2021-06-14 22:37:05 +02:00
99be4c7e7e (v1.7.1.9002) ab class selectors update 2021-06-14 22:04:04 +02:00
683a0e748a (v1.7.1.9001) unit tests 2021-06-05 15:12:01 +02:00
1908e7cc7a (v1.7.1.9000) ab_class update, unit tests 2021-06-04 21:07:55 +02:00
7e70403efb (v1.7.1) New CRAN release 2021-06-03 15:19:21 +02:00
279376fccb (v1.7.0.9002) old MO codes 2021-06-01 16:36:33 +02:00
bef0f42f66 (v1.7.0.9001) CLSI 2020 guideline 2021-06-01 15:33:06 +02:00
f406319503 (v1.7.0.9000) package size 2021-05-30 22:14:38 +02:00
f1d9b489c5 (v1.7.0) unit tests 2021-05-26 14:04:12 +02:00
41d279daa1 (v1.7.0) v1.7.0 2021-05-26 11:10:34 +02:00
ac73a8d849 v1.7.0 2021-05-24 15:29:17 +02:00
e5599bc694 (v1.6.0.9065) unit tests 2021-05-24 11:01:32 +02:00
4fbf9e1720 (v1.6.0.9064) prepare new release 2021-05-24 09:34:08 +02:00
a13fd98e8b (v1.6.0.9063) prepare new release 2021-05-24 09:00:11 +02:00
06302d296a (v1.6.0.9062) code consistency 2021-05-24 00:06:28 +02:00
07939b1a14 (v1.6.0.9061) age() update 2021-05-23 23:11:16 +02:00
fa2f5214b9 (v1.6.0.9060) unit tests 2021-05-22 10:05:59 +02:00
0b1f59edec (v1.6.0.9058) unit tests 2021-05-22 08:58:51 +02:00
65a8b58aa6 (v1.6.0.9056) support codecov again 2021-05-21 20:30:48 +02:00
b210f1327c (v1.6.0.9055) support codecov again 2021-05-21 20:20:51 +02:00
fecc5d183c (v1.6.0.9054) unit tests 2021-05-20 15:06:08 +02:00
69a656abc0 (v1.6.0.9053) unit tests 2021-05-20 13:42:17 +02:00
4a2a48b7c1 (v1.6.0.9052) unit tests 2021-05-20 11:42:39 +02:00
04ef5b28e7 (v1.6.0.9050) printing NA in custom_eucast_rules() 2021-05-20 10:10:40 +02:00
9a2879cba9 (v1.6.0.9049) unit tests 2021-05-20 00:07:27 +02:00
2413efd5c1 (v1.6.0.9048) ab selectors overhaul 2021-05-19 22:55:42 +02:00
6920c0be41 (v1.6.0.9047) filter_ab_class() fixes 2021-05-18 11:29:31 +02:00
d67371acd1 that 1 AM error 2021-05-18 00:58:39 +02:00
cfb7df823e (v1.6.0.9044) betalactams() selector 2021-05-18 00:53:04 +02:00
be49131ed7 (v1.6.0.9043) translation update 2021-05-17 19:43:01 +02:00
83fec69a03 (v1.6.0.9042) translation update 2021-05-17 11:26:12 +02:00
916df6e90c (v1.6.0.9041) filter_ab_class() fix 2021-05-16 10:50:00 +02:00
00496e45b7 (v1.6.0.9040) unit tests 2021-05-16 09:25:36 +02:00
6c3ab19e3a (v1.6.0.9038) unit tests 2021-05-15 23:47:36 +02:00
3619c1327c (v1.6.0.9037) unit tests 2021-05-15 23:36:02 +02:00
73fb0374c3 (v1.6.0.9036) unit tests 2021-05-15 23:25:10 +02:00
229e1bb407 (v1.6.0.9035) unit tests 2021-05-15 22:55:12 +02:00
6e60ddf8d7 (v1.6.0.9034) unit tests 2021-05-15 22:35:57 +02:00
86736ab9a7 (v1.6.0.9032) unit tests 2021-05-15 21:54:56 +02:00
d8c91d5876 (v1.6.0.9031) tinytest unit tests 2021-05-15 21:36:22 +02:00
9a381c8d18 (v1.6.0.9030) new unit test flow 2021-05-13 23:07:31 +02:00
9ed2f6490f (v1.6.0.9028) new unit test flow 2021-05-13 22:44:11 +02:00
5b9fb8daf4 (v1.6.0.9027) new unit test flow 2021-05-13 21:54:15 +02:00
b1d942be91 (v1.6.0.9026) new unit test flow 2021-05-13 21:16:22 +02:00