dr. M.S. (Matthijs) Berends
8249cfda46
(v2.1.1.9120) unit test fix
2024-12-15 20:32:55 +01:00
dr. M.S. (Matthijs) Berends
7e7db6bb81
support for Dutch national MDR guideline
2024-12-15 20:15:52 +01:00
dr. M.S. (Matthijs) Berends
d7de1bc33d
(v2.1.1.9118) move ggplot2 plotting functions to general 'plotting' man page
2024-12-14 19:41:15 +01:00
dr. M.S. (Matthijs) Berends
bfef094bbc
(v2.1.1.9117) fix unit tests for old R versions
2024-12-13 10:35:17 +01:00
dr. M.S. (Matthijs) Berends
175a6777f3
(v2.1.1.9116) selectors as separate functions
2024-12-13 09:44:54 +01:00
dr. M.S. (Matthijs) Berends
e231352617
website update
2024-12-09 18:42:47 +01:00
dr. M.S. (Matthijs) Berends
e0dc7a86d7
website update
2024-12-09 14:44:11 +01:00
dr. M.S. (Matthijs) Berends
61f2890993
website update
2024-12-09 10:30:02 +01:00
dr. M.S. (Matthijs) Berends
419cb5b9c4
(v2.1.1.9112) unit test
2024-12-06 18:01:54 +01:00
dr. M.S. (Matthijs) Berends
0488d00f20
(v2.1.1.9111) add betalactams_with_inhibitor(), fixes #175
2024-12-06 15:44:20 +01:00
dr. M.S. (Matthijs) Berends
059618e710
(v2.1.1.9110) update Py pkg
2024-11-21 22:23:40 +01:00
dr. M.S. (Matthijs) Berends
7f4ea96c09
(v2.1.1.9109) another version bump
2024-11-21 22:02:34 +01:00
dr. M.S. (Matthijs) Berends
38bb36ca19
(v2.1.1.9108) version update
2024-11-21 21:58:05 +01:00
dr. M.S. (Matthijs) Berends
0fda130a0b
(v2.1.1.9107) new pkg knowledge for AMR
2024-11-21 12:02:58 +01:00
dr. M.S. (Matthijs) Berends
31a0da0d3a
(v2.1.1.9106) bump version nr for Python testing
2024-11-21 11:22:37 +01:00
dr. M.S. (Matthijs) Berends
a80bb5146e
add Python package to repo
2024-11-21 11:07:55 +01:00
dr. M.S. (Matthijs) Berends
87271d261a
add Python package to repo
2024-11-21 10:06:26 +01:00
dr. M.S. (Matthijs) Berends
f424c39474
(v2.1.1.9103) add gpt training file to commit
2024-10-18 11:00:58 +02:00
dr. M.S. (Matthijs) Berends
da6321c504
(v2.1.1.9102) fix sir
2024-10-18 10:58:57 +02:00
dr. M.S. (Matthijs) Berends
11b1dc2b02
Fix Py
2024-10-17 15:28:13 +02:00
dr. M.S. (Matthijs) Berends
b1399259e7
(v2.1.1.9100) PyPI update
2024-10-17 15:22:19 +02:00
dr. M.S. (Matthijs) Berends
cfd31f0f0c
(v2.1.1.9099) fix generating GPT training test
2024-10-17 11:55:23 +02:00
dr. M.S. (Matthijs) Berends
a9e753b1dc
(v2.1.1.9098) update Py vigettes
2024-10-17 11:52:01 +02:00
dr. M.S. (Matthijs) Berends
40edc16fdf
fix PyPI
2024-10-15 17:31:47 +02:00
dr. M.S. (Matthijs) Berends
448b6abb06
fix Python PI publish
2024-10-15 17:27:00 +02:00
dr. M.S. (Matthijs) Berends
5c4d8fcd2a
(v2.1.1.9095) Python support
2024-10-15 17:12:55 +02:00
dr. M.S. (Matthijs) Berends
94501371cd
(v2.1.1.9094) fix antibiotics
2024-10-10 16:38:20 +02:00
dr. M.S. (Matthijs) Berends
ef79d22daf
(v2.1.1.9093) New brand names
2024-10-06 22:30:52 +02:00
dr. M.S. (Matthijs) Berends
c588902f4c
(v2.1.1.9092) Fix website
2024-10-06 16:25:31 +02:00
dr. M.S. (Matthijs) Berends
325664f5aa
(v2.1.1.9090) website error
2024-10-04 16:08:41 +02:00
dr. M.S. (Matthijs) Berends
0736ac7a7e
(v2.1.1.9089) website update
2024-10-04 15:44:05 +02:00
dr. M.S. (Matthijs) Berends
9fb891eee2
(v2.1.1.9087) update unit tests
2024-10-04 15:28:44 +02:00
dr. M.S. (Matthijs) Berends
738689beea
website (no-verify)
2024-10-02 10:31:43 +02:00
dr. M.S. (Matthijs) Berends
50a9f8f0e0
(v2.1.1.9086) website update
2024-10-02 10:20:05 +02:00
dr. M.S. (Matthijs) Berends
91415462c0
(v2.1.1.9084) add vignette about Python
2024-09-30 22:04:44 +02:00
dr. M.S. (Matthijs) Berends
8907e8e4af
(v2.1.1.9083) update for first_isolate()
2024-09-30 19:13:53 +02:00
dr. M.S. (Matthijs) Berends
681fe011fe
(v2.1.1.9082) algorithm updates
2024-09-30 18:46:55 +02:00
dr. M.S. (Matthijs) Berends
ac1c40d8bb
(v2.1.1.9081) HUGE microorganisms update for fungi!
2024-09-29 22:17:56 +02:00
dr. M.S. (Matthijs) Berends
a558f4c121
(v2.1.1.9080) fix rescale_mic() for an outside MIC range
2024-09-24 22:39:40 +02:00
dr. M.S. (Matthijs) Berends
1ca40e8d67
(v2.1.1.9079) fix for uti in as.sir()
2024-09-24 15:34:12 +02:00
dr. M.S. (Matthijs) Berends
127892430d
(v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA
2024-09-22 11:45:51 +02:00
dr. M.S. (Matthijs) Berends
28bf91cbf5
(v2.1.1.9077) fix logos
2024-09-19 14:40:19 +02:00
dr. M.S. (Matthijs) Berends
82239503ee
(v2.1.1.9076)
2024-09-19 14:22:09 +02:00
dr. M.S. (Matthijs) Berends
a88472a263
test new git hook
2024-09-19 14:20:03 +02:00
dr. M.S. (Matthijs) Berends
29756977cf
no-verify
2024-09-19 13:58:41 +02:00
dr. M.S. (Matthijs) Berends
4e96a56b6a
(v2.1.1.9073) unit tests
2024-09-19 13:57:36 +02:00
dr. M.S. (Matthijs) Berends
ef8ef28650
(v2.1.1.9072)
2024-09-19 11:46:17 +02:00
dr. M.S. (Matthijs) Berends
ddb23b6e73
(v2.1.1.9071) update veterinary SIR interpretation, add only_fungi
2024-09-19 11:44:56 +02:00
dr. M.S. (Matthijs) Berends
573c0346ed
(v2.1.1.9070) fix for mo_current mo (no-verify)
2024-07-19 18:05:49 +02:00
dr. M.S. (Matthijs) Berends
83907c9c65
add files (no-verify)
2024-07-17 14:31:09 +02:00
dr. M.S. (Matthijs) Berends
7258a491b9
(v2.1.1.9068) fix for mo_url() and as.mo() for synonyms
2024-07-17 14:29:55 +02:00
dr. M.S. (Matthijs) Berends
63f6790c58
add (no-verify)
2024-07-16 16:10:38 +02:00
dr. M.S. (Matthijs) Berends
b94dac770c
(v2.1.1.9066) git hook fix?
2024-07-16 16:09:33 +02:00
dr. M.S. (Matthijs) Berends
ff03bb6471
(v2.1.1.9065) unit tests 2
2024-07-16 15:58:18 +02:00
dr. M.S. (Matthijs) Berends
7f344836ea
(v2.1.1.9064) unit tests
2024-07-16 15:55:58 +02:00
dr. M.S. (Matthijs) Berends
640888f408
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
dr. M.S. (Matthijs) Berends
4f9db23684
check for windows unit test (no-check)
2024-06-23 16:18:42 +02:00
dr. M.S. (Matthijs) Berends
82585901a7
(v2.1.1.9061) animal host fix
2024-06-19 15:41:45 +02:00
dr. M.S. (Matthijs) Berends
c67d003e9e
(v2.1.1.9060) SDD results now in as.sir()
2024-06-19 15:08:23 +02:00
dr. M.S. (Matthijs) Berends
0c3d81f32e
(v2.1.1.9059) documentation fix
2024-06-17 22:26:05 +02:00
dr. M.S. (Matthijs) Berends
1bc2e04e1c
(v2.1.1.9058) fix hosts, add translations
2024-06-17 22:19:38 +02:00
dr. M.S. (Matthijs) Berends
a4dc37a4e4
(v2.1.1.9057) fix for missing breakpoints
2024-06-17 16:52:12 +02:00
dr. M.S. (Matthijs) Berends
d9e66fb118
(v2.1.1.9056) example fix
2024-06-17 14:52:18 +02:00
dr. M.S. (Matthijs) Berends
1e65b5a289
(v2.1.1.9055) example fix
2024-06-17 14:36:40 +02:00
dr. M.S. (Matthijs) Berends
13baf8d7be
(v2.1.1.9054) fix examples
2024-06-17 13:52:02 +02:00
dr. M.S. (Matthijs) Berends
2dee1d71dc
(v2.1.1.9053) add verbose to as.sir(), unit test fix
2024-06-17 10:38:45 +02:00
dr. M.S. (Matthijs) Berends
68f7795481
(v2.1.1.9052) unit test fix
2024-06-16 20:53:50 +02:00
dr. M.S. (Matthijs) Berends
4ffac7e22d
(v2.1.1.9051) fix VGS mo code
2024-06-16 11:28:56 +02:00
dr. M.S. (Matthijs) Berends
bdbf5198a2
(v2.1.1.9050) vctrs fix for sir, small documentation fixes
2024-06-15 15:33:49 +02:00
dr. M.S. (Matthijs) Berends
9bf7584d58
(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N
2024-06-14 22:39:01 +02:00
dr. M.S. (Matthijs) Berends
de17de1be9
(v2.1.1.9048) vctrs update for sir
2024-06-13 20:55:17 +02:00
dr. M.S. (Matthijs) Berends
3179216c81
(v2.1.1.9047) unit test and index
2024-06-13 07:37:53 +02:00
dr. M.S. (Matthijs) Berends
cd1b37ff69
(v2.1.1.9046) unit test fix
2024-06-12 14:37:44 +02:00
dr. M.S. (Matthijs) Berends
c753afcd76
(v2.1.1.9045) fix host in animal guidelines
2024-06-12 10:32:43 +02:00
dr. M.S. (Matthijs) Berends
3a54711dfe
(v2.1.1.9044) update website
2024-06-10 15:10:54 +02:00
dr. M.S. (Matthijs) Berends
31207952d3
(v2.1.1.9043) fix sir translation with as.double
2024-06-10 10:34:45 +02:00
dr. M.S. (Matthijs) Berends
a3071cf58b
(v2.1.1.9042) update translations and example isolates
2024-06-09 11:31:04 +02:00
dr. M.S. (Matthijs) Berends
af74e1d4f2
(v2.1.1.9041) antibiotics update
2024-06-08 17:35:25 +02:00
dr. M.S. (Matthijs) Berends
e2acc513a5
(v2.1.1.9040) try to put version number in commit msg
2024-06-07 12:07:07 +02:00
dr. M.S. (Matthijs) Berends
0bda9e9997
try to add version to commit msg
2024-06-04 20:21:12 +02:00
dr. M.S. (Matthijs) Berends
c5981cdeb3
fix unit test
2024-06-04 20:17:54 +02:00
dr. M.S. (Matthijs) Berends
7c1b564648
fix SIR interpretation for uti
2024-05-31 21:24:35 +02:00
dr. M.S. (Matthijs) Berends
60c6c21e45
fix SIR interpretation
2024-05-31 09:50:54 +02:00
dr. M.S. (Matthijs) Berends
ba4dc20cf3
autoplot fix
2024-05-30 16:39:59 +02:00
dr. M.S. (Matthijs) Berends
d4490c7f25
fix sorting of MICs, MIC autoplot titles
2024-05-30 15:50:17 +02:00
dr. M.S. (Matthijs) Berends
c3ce1b551d
rename limit_mic_range() to rescale_mic()
2024-05-24 15:07:41 +02:00
dr. M.S. (Matthijs) Berends
d214f74e25
allow column name for ab in as.sir()
2024-05-20 21:29:13 +02:00
dr. M.S. (Matthijs) Berends
fc269e667d
unit test fix
2024-05-20 18:58:35 +02:00
dr. M.S. (Matthijs) Berends
08a27922a8
new SDD and N for as.sir()
2024-05-20 15:27:04 +02:00
dr. M.S. (Matthijs) Berends
b68f47d985
improved algorithm of as.ab()
2024-05-12 16:24:44 +02:00
dr. M.S. (Matthijs) Berends
1bce7ed3d3
fix git hooks
2024-04-24 11:58:16 +02:00
dr. M.S. (Matthijs) Berends
7f18e66c4e
unit test fix
2024-04-24 11:42:43 +02:00
dr. M.S. (Matthijs) Berends
3e5c7d45c6
update intro logo
2024-04-24 09:58:24 +02:00
dr. M.S. (Matthijs) Berends
25089e811e
correct for high-level abx
2024-04-24 09:50:32 +02:00
dr. M.S. (Matthijs) Berends
0d8a91db49
rename pre-commit hook to pre-commit checks (no-check)
2024-04-23 10:55:48 +02:00
dr. M.S. (Matthijs) Berends
04df6dfcf5
fix website nav header (no-check)
2024-04-23 10:33:26 +02:00
dr. M.S. (Matthijs) Berends
35f095cceb
fixes #148
2024-04-23 09:34:05 +02:00
dr. M.S. (Matthijs) Berends
2899b3c840
new mo_group_members()
2024-04-19 10:18:21 +02:00
dr. M.S. (Matthijs) Berends
7e7bc9d56e
Merge branch 'main' of https://github.com/msberends/AMR
2024-04-08 09:58:54 +02:00
dr. M.S. (Matthijs) Berends
d2c5e4b749
update website colours
2024-04-08 09:55:21 +02:00
