dr. M.S. (Matthijs) Berends
89c447b290
Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102 , fixes #112 , fixes #113 , fixes #114 , fixes #115
2023-06-09 22:30:43 +02:00
dr. M.S. (Matthijs) Berends
9591688811
documentation update
2023-05-27 10:39:22 +02:00
dr. M.S. (Matthijs) Berends
e1966503ee
unit testing R4.3
2023-05-26 20:37:00 +02:00
dr. M.S. (Matthijs) Berends
766db4e21f
as.mo fix
2023-05-26 19:20:21 +02:00
dr. M.S. (Matthijs) Berends
c6135d2082
updated microorganism codes
2023-05-26 16:10:01 +02:00
dr. M.S. (Matthijs) Berends
0bcf55d3b6
improve as.mo()
2023-05-24 15:55:53 +02:00
dr. M.S. (Matthijs) Berends
91fa73dedf
add oxygen tolerance
2023-05-11 21:56:27 +02:00
dr. M.S. (Matthijs) Berends
bf08d136a0
fix coercing NA to custom codes, fixes #107
2023-05-08 13:04:18 +02:00
dr. M.S. (Matthijs) Berends
9148a2dcf4
fix mo_rank() for 'unknown' MOs
2023-04-20 15:20:41 +02:00
dr. M.S. (Matthijs) Berends
02322ac2ee
Fix PK/PD breakpoints
2023-04-19 00:31:31 +02:00
dr. M.S. (Matthijs) Berends
ed70f95380
Fix clinical breakpoints
2023-04-14 23:14:34 +02:00
dr. M.S. (Matthijs) Berends
147f9112e9
Fix some WHONET codes
2023-04-14 11:12:26 +02:00
dr. M.S. (Matthijs) Berends
549790c2a6
website
2023-03-20 21:59:50 +01:00
dr. M.S. (Matthijs) Berends
c28cfa3a77
fix documentation
2023-03-16 08:55:37 +01:00
dr. M.S. (Matthijs) Berends
dd7cc86485
help page %like%
2023-03-14 19:49:50 +01:00
dr. M.S. (Matthijs) Berends
80cfc503c2
check for 2.0
2023-03-12 13:02:37 +01:00
dr. M.S. (Matthijs) Berends
7ad8635994
documentation for 'data.table' AB selectors
2023-03-11 16:54:02 +01:00
dr. M.S. (Matthijs) Berends
45e840c02f
update NEWS
2023-03-11 14:43:31 +01:00
dr. M.S. (Matthijs) Berends
262598b8d7
support for old rsi arguments
2023-03-11 14:24:34 +01:00
dr. M.S. (Matthijs) Berends
1d3d7d40bc
get episode unit tests
2023-02-24 19:54:56 +01:00
dr. M.S. (Matthijs) Berends
2c5a9bb622
new relative episode determination in get_episode(), fix for plotting disk/MIC values
2023-02-24 17:06:30 +01:00
dr. M.S. (Matthijs) Berends
92029c9e95
remove note
2023-02-24 10:31:36 +01:00
dr. M.S. (Matthijs) Berends
049baf0a71
fix for antibiograms on R < 3.5
2023-02-24 09:43:10 +01:00
dr. M.S. (Matthijs) Berends
e70f2cd32c
knitr format
2023-02-23 16:27:40 +01:00
dr. M.S. (Matthijs) Berends
a84101db08
N for only 1 AB in
2023-02-22 16:26:13 +01:00
dr. M.S. (Matthijs) Berends
c2cfc5ef84
fix for antibiogram(), transform WHONET data set to sir
2023-02-22 15:40:05 +01:00
dr. M.S. (Matthijs) Berends
dad25302f2
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
dr. M.S. (Matthijs) Berends
e890360986
website syntax update
2023-02-17 11:39:00 +01:00
dr. M.S. (Matthijs) Berends
714a048fa9
italicise antibiogram
2023-02-17 09:42:51 +01:00
dr. M.S. (Matthijs) Berends
ef716f6ee3
doc fix
2023-02-15 17:16:40 +01:00
dr. M.S. (Matthijs) Berends
3396236eef
unit test fixes
2023-02-13 16:56:25 +01:00
dr. M.S. (Matthijs) Berends
b6d2b1398d
Fix for antibiogram() in R <=3.4
2023-02-13 10:21:43 +01:00
dr. M.S. (Matthijs) Berends
45a9697c84
unit tests
2023-02-12 17:10:48 +01:00
dr. M.S. (Matthijs) Berends
68abb00c59
add include_screening to as.sir()
2023-02-12 15:09:54 +01:00
dr. M.S. (Matthijs) Berends
b146de6d7f
fix for bind_rows2, added 4 langs
2023-02-11 21:57:12 +01:00
dr. M.S. (Matthijs) Berends
03294c7901
fix for Salmonella group A, unit tests
2023-02-10 16:47:25 +01:00
dr. M.S. (Matthijs) Berends
bc434db835
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
dr. M.S. (Matthijs) Berends
70a7ba0206
fix first isolate
2023-02-10 13:13:17 +01:00
dr. M.S. (Matthijs) Berends
1a0dc4bf46
revert back to pre-antibiogram
2023-02-09 13:07:39 +01:00
dr. M.S. (Matthijs) Berends
aa48c6bf53
pm fixes
2023-02-08 16:51:41 +01:00
dr. M.S. (Matthijs) Berends
f7dd890b79
fixes
2023-02-06 12:38:52 +01:00
dr. M.S. (Matthijs) Berends
9e99e66f01
use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
dr. M.S. (Matthijs) Berends
4b133d4c96
unit tests
2023-01-30 17:24:03 +01:00
dr. M.S. (Matthijs) Berends
830c67f1bf
documentation, unit tests
2023-01-24 10:20:27 +01:00
dr. M.S. (Matthijs) Berends
eef00069fd
add all options to documentation
2023-01-23 20:07:57 +01:00
dr. M.S. (Matthijs) Berends
19fd0ef121
sort sir history
2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR
2023-01-21 23:47:20 +01:00
dr. M.S. (Matthijs) Berends
593d740b84
documentation, file permissions
2023-01-19 12:54:53 +01:00
dr. M.S. (Matthijs) Berends
b94bc6c67b
adding mo fixes
2023-01-14 19:50:25 +01:00
dr. M.S. (Matthijs) Berends
ca79068604
Fix for adding MO's
2023-01-14 17:10:10 +01:00
