dr. M.S. (Matthijs) Berends
f03933940c
(v2.1.1.9131) implement testthat
2025-01-27 21:43:10 +01:00
dr. M.S. (Matthijs) Berends
92166c16e8
fix2
2025-01-27 16:34:26 +01:00
dr. M.S. (Matthijs) Berends
1149360b27
(v2.1.1.9129) unit test fix
2025-01-27 16:17:03 +01:00
dr. M.S. (Matthijs) Berends
7accf6ff13
(v2.1.1.9127) unit tests
2025-01-27 10:46:43 +01:00
dr. M.S. (Matthijs) Berends
66833b4f5a
(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
2025-01-26 23:01:17 +01:00
dr. M.S. (Matthijs) Berends
92c4fc0f94
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'
2025-01-17 12:09:39 +01:00
dr. M.S. (Matthijs) Berends
08ddbaa930
(v2.1.1.9123) add EFF code to antibiotics data set
2025-01-15 16:14:09 +01:00
dr. M.S. (Matthijs) Berends
15fc72fc66
(v2.1.1.9121) support tidymodels
2024-12-19 20:17:15 +01:00
dr. M.S. (Matthijs) Berends
8249cfda46
(v2.1.1.9120) unit test fix
2024-12-15 20:32:55 +01:00
dr. M.S. (Matthijs) Berends
175a6777f3
(v2.1.1.9116) selectors as separate functions
2024-12-13 09:44:54 +01:00
dr. M.S. (Matthijs) Berends
9fb891eee2
(v2.1.1.9087) update unit tests
2024-10-04 15:28:44 +02:00
dr. M.S. (Matthijs) Berends
8907e8e4af
(v2.1.1.9083) update for first_isolate()
2024-09-30 19:13:53 +02:00
dr. M.S. (Matthijs) Berends
681fe011fe
(v2.1.1.9082) algorithm updates
2024-09-30 18:46:55 +02:00
dr. M.S. (Matthijs) Berends
127892430d
(v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA
2024-09-22 11:45:51 +02:00
dr. M.S. (Matthijs) Berends
4e96a56b6a
(v2.1.1.9073) unit tests
2024-09-19 13:57:36 +02:00
dr. M.S. (Matthijs) Berends
573c0346ed
(v2.1.1.9070) fix for mo_current mo (no-verify)
2024-07-19 18:05:49 +02:00
dr. M.S. (Matthijs) Berends
7258a491b9
(v2.1.1.9068) fix for mo_url() and as.mo() for synonyms
2024-07-17 14:29:55 +02:00
dr. M.S. (Matthijs) Berends
7f344836ea
(v2.1.1.9064) unit tests
2024-07-16 15:55:58 +02:00
dr. M.S. (Matthijs) Berends
640888f408
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
dr. M.S. (Matthijs) Berends
4f9db23684
check for windows unit test (no-check)
2024-06-23 16:18:42 +02:00
dr. M.S. (Matthijs) Berends
82585901a7
(v2.1.1.9061) animal host fix
2024-06-19 15:41:45 +02:00
dr. M.S. (Matthijs) Berends
c67d003e9e
(v2.1.1.9060) SDD results now in as.sir()
2024-06-19 15:08:23 +02:00
dr. M.S. (Matthijs) Berends
d9e66fb118
(v2.1.1.9056) example fix
2024-06-17 14:52:18 +02:00
dr. M.S. (Matthijs) Berends
2dee1d71dc
(v2.1.1.9053) add verbose to as.sir(), unit test fix
2024-06-17 10:38:45 +02:00
dr. M.S. (Matthijs) Berends
68f7795481
(v2.1.1.9052) unit test fix
2024-06-16 20:53:50 +02:00
dr. M.S. (Matthijs) Berends
9bf7584d58
(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N
2024-06-14 22:39:01 +02:00
dr. M.S. (Matthijs) Berends
de17de1be9
(v2.1.1.9048) vctrs update for sir
2024-06-13 20:55:17 +02:00
dr. M.S. (Matthijs) Berends
3179216c81
(v2.1.1.9047) unit test and index
2024-06-13 07:37:53 +02:00
dr. M.S. (Matthijs) Berends
cd1b37ff69
(v2.1.1.9046) unit test fix
2024-06-12 14:37:44 +02:00
dr. M.S. (Matthijs) Berends
c753afcd76
(v2.1.1.9045) fix host in animal guidelines
2024-06-12 10:32:43 +02:00
dr. M.S. (Matthijs) Berends
3a54711dfe
(v2.1.1.9044) update website
2024-06-10 15:10:54 +02:00
dr. M.S. (Matthijs) Berends
31207952d3
(v2.1.1.9043) fix sir translation with as.double
2024-06-10 10:34:45 +02:00
dr. M.S. (Matthijs) Berends
60c6c21e45
fix SIR interpretation
2024-05-31 09:50:54 +02:00
dr. M.S. (Matthijs) Berends
d214f74e25
allow column name for ab in as.sir()
2024-05-20 21:29:13 +02:00
dr. M.S. (Matthijs) Berends
08a27922a8
new SDD and N for as.sir()
2024-05-20 15:27:04 +02:00
dr. M.S. (Matthijs) Berends
25089e811e
correct for high-level abx
2024-04-24 09:50:32 +02:00
dr. M.S. (Matthijs) Berends
2899b3c840
new mo_group_members()
2024-04-19 10:18:21 +02:00
dr. M.S. (Matthijs) Berends
0039cb05d6
update MIC comparisons
2024-04-05 16:44:43 +02:00
dr. M.S. (Matthijs) Berends
4170def0ec
unit test
2024-03-09 16:46:59 +01:00
dr. M.S. (Matthijs) Berends
7be4dabbc0
support veterinary MIC/disk translation
2024-02-24 15:16:52 +01:00
Emil Rossing
74ea6c8c60
Added support for 'html' in italicize_taxonomy() ( #134 )
2024-02-13 13:47:07 +01:00
dr. M.S. (Matthijs) Berends
7059568581
fix scale functions
2023-12-03 16:51:54 +01:00
dr. M.S. (Matthijs) Berends
ca72a646d0
scientific notation for MICs
2023-10-20 15:45:00 +02:00
dr. M.S. (Matthijs) Berends
bcab4bc9ba
Fixes #123
2023-10-20 15:07:11 +02:00
dr. M.S. (Matthijs) Berends
7cda9e575b
prepare for CRAN
2023-10-20 14:51:48 +02:00
dr. M.S. (Matthijs) Berends
fd480d1a9a
console hyperlink fix
2023-07-14 09:50:13 +02:00
dr. M.S. (Matthijs) Berends
8df1cd8d97
interpretation fixes
2023-07-11 09:50:45 +02:00
dr. M.S. (Matthijs) Berends
dab20c09f6
unit test
2023-07-10 18:30:26 +02:00
dr. M.S. (Matthijs) Berends
70c601ca11
breakpoints UTI interpretation fix
2023-07-10 13:41:52 +02:00
dr. M.S. (Matthijs) Berends
acb534102b
new species groups, updated clinical breakpoints
2023-07-08 17:30:05 +02:00
