Claude
b1cf7a94ad
Migrate parallel computing in as.sir() from parallel:: to future/future.apply
...
Replace parallel::mclapply() and parallel::parLapply() with
future.apply::future_lapply(), enabling transparent support for any
future backend (multisession, multicore, mirai_multisession, cluster)
on all platforms including Windows.
When parallel = TRUE the function now: (1) respects an active
future::plan() set by the user without overriding it on exit, or
(2) sets a temporary multisession plan with parallelly::availableCores()
and tears it down on exit. The max_cores argument controls worker count
only when no user plan is active.
future and future.apply are added to Suggests in DESCRIPTION.
https://claude.ai/code/session_01M1Jvf2Miu6JL4TQrEh1wS8
2026-04-27 12:21:48 +00:00
3f1b20c304
(v3.0.1.9052) fix NEWS
2026-04-25 16:21:31 +02:00
e7780b6d5f
(v3.0.1.9048) fix #275
2026-04-22 08:16:44 +02:00
e0f8cf0882
(v3.0.1.9047) fix #272
2026-04-21 22:11:40 +02:00
Matthijs Berends
8ff5d4472a
Add add_if_missing parameter to control NA handling in interpretive rules ( #264 )
2026-04-21 21:53:43 +02:00
26613d774b
(v3.0.1.9042) add EUCAST breakpoint table v16 to interpretive_rules()
2026-04-02 11:42:19 +02:00
3a736bc484
(v3.0.1.9041) add breakpoints 2026
2026-03-30 10:01:49 +02:00
3d1412e8c9
(v3.0.1.9037) improve cli messages
2026-03-22 20:44:37 +01:00
4dc3ec0008
(v3.0.1.9034) Add amr_course()
2026-03-11 16:07:31 +01:00
353eaa3f38
(v3.0.1.9033) add ionophores(), clorobiocin, aminocoumarins group
2026-03-09 11:57:36 +01:00
b6f8584994
(v3.0.1.9031) fix MDRO for non-RStudio terminal
2026-03-08 11:30:18 +01:00
daab605ca4
(v3.0.1.9028) fix unique CIDs
2026-03-06 18:53:42 +01:00
c0a394008e
(v3.0.1.9027) Fixes #252 and add documentation update regarding #253
2026-03-06 13:10:33 +01:00
60e8f2bae6
(v3.0.1.9026) fix ab_group(NA)
2026-03-06 12:41:27 +01:00
b6211931f8
(v3.0.1.9022) add ceftibuten/avibactam (CTA), kasugamycin (KAS), ostreogrycin (OST), thiostrepton (THS), xeruborbactam (XER), zorbamycin (ZOR)
2026-03-03 15:41:08 +01:00
12cf144b19
(v3.0.1.9021) add guideline to resistance() and susceptibility()
2026-02-12 20:34:06 +01:00
499c830ee7
(v3.0.1.9020) unit test fixes
2026-02-09 13:16:36 +01:00
ba4c159154
(v3.0.1.9019) Wildtype/Non-wildtype support, and start with interpretive_rules()
...
Fixes #246
Fixes #254
Fixes #255
Fixes #256
2026-02-08 23:15:40 +01:00
2df2911cf4
(v3.0.1.9018) fixes #249
...
updates AB groups
2026-01-16 10:57:03 +01:00
fd50c51543
(v3.0.1.9017) fix documentation
2026-01-08 14:03:02 +01:00
cfbbfb4fa5
(v3.0.1.9007) fix #246
2026-01-06 23:08:50 +01:00
151af21f38
(v3.0.1.9005) re-add tidymodels implementation
2025-12-21 12:19:43 +01:00
225c73f7e7
(v3.0.1.9004) Revamp as.sir() interpretation for capped MICs
...
Fixes #243
Fixes #244
2025-12-15 13:18:13 +01:00
ba30b08f76
(v3.0.1.9003) Add taniborbactam and cefepime/taniborbactam
2025-11-24 11:24:02 +01:00
0b24967b23
(v3.0.1.9001) fix antibiogram
2025-09-30 10:54:07 +02:00
adee419f1c
v3.0.1
2025-09-20 17:14:07 +01:00
10ba36821e
(v3.0.0.9034) fix MycoBank synonyms
2025-09-18 13:58:34 +01:00
3ba1b8a10a
(v3.0.0.9022) postpone new features - we like a clearly focussed bugfix release first
2025-09-03 15:39:44 +02:00
60bd631e1a
(v3.0.0.9019) Fixes #229 , #230 , #227 , #225
2025-09-01 16:56:55 +02:00
9b07a8573a
(v3.0.0.9018) keep all reasons in mdro(), fixed #227
2025-08-07 16:23:47 +02:00
6cb724a208
(v3.0.0.9015) plotting fix
2025-07-19 14:06:36 +02:00
49274f010b
(v3.0.0.9014) fix plot colours
2025-07-18 15:57:48 +02:00
39ea5f6597
(v3.0.0.9011) allow names for age_groups()
2025-07-17 19:32:46 +02:00
d94bdd2c6a
(v3.0.0.9008) fix ggplot_sir(), support lighter green for SDD
2025-07-17 17:05:41 +02:00
8dab0a3730
(v3.0.0.9007) allow any tidyselect language in as.sir()
2025-07-17 14:29:35 +02:00
72db2b2562
(v3.0.0.9003) eucast_rules fix, new tidymodels integration
2025-06-13 14:03:21 +02:00
753f0e1ef9
(v3.0.0.9001) the first fixes
2025-06-04 13:10:20 +02:00
1710e220dd
AMR v3.0\!
2025-06-02 12:11:00 +02:00
d384b492cf
(v2.1.1.9289) unit test fix
2025-06-01 16:00:12 +02:00
5667ce3eae
(v2.1.1.9287) fix antibiotics
2025-06-01 12:17:47 +02:00
e70f3de02e
(v2.1.1.9286) deprecate antibiotics better, add ATC for ceftaroline
2025-06-01 11:54:40 +02:00
38cebc1541
(v2.1.1.9279) fix documentation, add foreign S3 exports to functions
2025-05-16 16:55:29 +02:00
139f79d372
(v2.1.1.9278) support AMR selectors in custom MDRO guideline
2025-05-16 11:20:19 +02:00
b8d7c8af7f
(v2.1.1.9277) mdro fix
2025-05-15 13:07:47 +02:00
4b171745de
(v2.1.1.9276) mdro() fix
2025-05-15 10:39:48 +02:00
48a59ee31a
(v2.1.1.9275) include guideline name in MDRO verbose output
2025-05-13 18:56:12 +02:00
7d45ca9fbf
(v2.1.1.9274) Improve is_sir_eligible, rename verbose MDRO output
2025-05-12 12:35:11 +02:00
fcd8b95e51
(v2.1.1.9272) mo codes sensititre
2025-05-04 18:50:25 +02:00
a778eb9bcf
(v2.1.1.9272) (v2.1.1.9271) add sensititre AB and animal codes
2025-05-04 16:40:08 +02:00
dc5559a2c4
(v2.1.1.9270) Add support for Korean, fix ATCs
2025-05-04 14:24:43 +02:00
