 dr. M.S. (Matthijs) Berends
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b1ead9c0fe
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doc update
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2022-12-10 10:09:57 +01:00 |
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dr. M.S. (Matthijs) Berends
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e7d7b94b3e
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no obligatory note on startup
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2022-12-09 15:10:49 +01:00 |
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dr. M.S. (Matthijs) Berends
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56dad34e68
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update prevalence with new phyla
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2022-12-09 13:37:08 +01:00 |
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dr. M.S. (Matthijs) Berends
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510140fc55
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Updated `mo_gramstain()` to reflect current taxonomy, fixes #83
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2022-12-09 10:30:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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ba51c2d92f
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add column to `as.mic()` and `as.disk()` warnings
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2022-11-28 19:39:52 +01:00 |
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dr. M.S. (Matthijs) Berends
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31fb81c382
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revised `as.rsi()`, fix for `mdro()`
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2022-11-24 20:29:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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05d536ebb7
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complexes
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2022-11-17 15:23:29 +01:00 |
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dr. M.S. (Matthijs) Berends
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f6862a139d
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expert rules 12.0
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2022-11-14 15:20:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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7ca44fb756
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
Dr. Matthijs Berends
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496c08d851
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Implement extensive support for antiviral agents support (#77)
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2022-11-13 08:46:10 +01:00 |
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dr. M.S. (Matthijs) Berends
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2d90218305
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documentation fix
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2022-11-05 12:06:40 +01:00 |
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dr. M.S. (Matthijs) Berends
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8dc94a9eda
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documentation fix
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2022-11-05 09:31:19 +01:00 |
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dr. M.S. (Matthijs) Berends
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3b652983b7
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documentation fix
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2022-11-05 08:18:06 +01:00 |
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dr. M.S. (Matthijs) Berends
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d20caae54b
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cleanup
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2022-10-31 13:25:41 +01:00 |
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dr. M.S. (Matthijs) Berends
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796b972f8a
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extend vctrs support
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2022-10-31 11:19:06 +01:00 |
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dr. M.S. (Matthijs) Berends
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9444ed6d1d
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fix antibiotics error
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2022-10-30 21:05:46 +01:00 |
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dr. M.S. (Matthijs) Berends
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d40e0ef20b
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completely updated `antibiotics`
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2022-10-30 14:31:45 +01:00 |
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dr. M.S. (Matthijs) Berends
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3d9faf89cf
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ATC and DDD update
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2022-10-29 19:01:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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afdc48db1e
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fix txt export of microorganisms
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2022-10-29 16:08:18 +02:00 |
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dr. M.S. (Matthijs) Berends
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6ad7857d39
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fix missing R breakpoints
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2022-10-29 14:15:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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c2801ba7a1
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new rsi_translation
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2022-10-22 22:00:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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d10651eb26
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cleanup
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2022-10-22 10:20:09 +02:00 |
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dr. M.S. (Matthijs) Berends
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d0b54f640c
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Update contributors list
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2022-10-21 21:56:54 +02:00 |
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dr. M.S. (Matthijs) Berends
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faca6d608a
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mean AMR distance
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2022-10-21 16:02:14 +02:00 |
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dr. M.S. (Matthijs) Berends
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178ab5e5ff
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mean AMR distance
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2022-10-21 15:59:31 +02:00 |
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dr. M.S. (Matthijs) Berends
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4bebba3610
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fix for scoped dplyr verbs
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2022-10-21 15:13:19 +02:00 |
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dr. M.S. (Matthijs) Berends
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aa2c0639d0
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add confidence intervals (fixed #70), remove `combine_IR`
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2022-10-20 16:08:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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85e2fbe4a3
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remove warnings from unit tests
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2022-10-19 11:47:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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f203928f7e
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coercion fixes
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2022-10-19 06:59:36 +02:00 |
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dr. M.S. (Matthijs) Berends
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3fc39198d0
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unit test fix
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2022-10-18 23:03:16 +02:00 |
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dr. M.S. (Matthijs) Berends
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e5e6d2200d
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fix add manual ab
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2022-10-18 22:53:38 +02:00 |
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dr. M.S. (Matthijs) Berends
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ad68b50ecd
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custom ab fix
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2022-10-15 15:20:13 +02:00 |
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Dr. Matthijs Berends
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85ed7ea5f0
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more robust install check
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2022-10-14 15:45:20 +02:00 |
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dr. M.S. (Matthijs) Berends
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76bcd3528c
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move object assignment to AMR_env
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2022-10-14 13:02:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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dfae4c7e7d
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fast-forward from pull
Merge branch 'main' of https://github.com/msberends/AMR into main
# Conflicts:
# DESCRIPTION
# R/add_custom_antimicrobials.R
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2022-10-11 10:53:51 +02:00 |
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dr. M.S. (Matthijs) Berends
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33227a5d90
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support ab selectors for manual AB codes
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2022-10-11 10:49:55 +02:00 |
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dr. M.S. (Matthijs) Berends
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57d66cd9d0
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doc fix
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2022-10-10 21:38:39 +02:00 |
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dr. M.S. (Matthijs) Berends
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955f9d7020
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documentation fix
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2022-10-10 21:03:39 +02:00 |
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dr. M.S. (Matthijs) Berends
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82e3198315
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add `add_custom_antimicrobials()`
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2022-10-10 20:20:39 +02:00 |
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dr. M.S. (Matthijs) Berends
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4fe90092c7
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fix for `NA` in `as.ab()`
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2022-10-10 15:44:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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43c638d122
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add `mo_current()`
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2022-10-10 10:12:08 +02:00 |
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dr. M.S. (Matthijs) Berends
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b753b84128
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fix for mo type translation
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2022-10-06 12:11:51 +02:00 |
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dr. M.S. (Matthijs) Berends
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b9342d103e
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fix documentation
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2022-10-06 11:33:30 +02:00 |
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Dr. Matthijs Berends
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cd2acc4a29
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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63fe160322
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new rsi_interpretation_history
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2022-09-01 15:20:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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3fca703fbf
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new AMR distance function
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2022-08-30 21:48:02 +02:00 |
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dr. M.S. (Matthijs) Berends
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fbd5d32541
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small fixes
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2022-08-29 09:35:36 +02:00 |
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dr. M.S. (Matthijs) Berends
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e7af5fc716
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fix AMR vignette
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2022-08-28 22:38:08 +02:00 |
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dr. M.S. (Matthijs) Berends
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2ed5f13880
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Fixes #57
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2022-08-28 21:13:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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c44ddf272f
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fix for R <= 3.3
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2022-08-28 19:34:04 +02:00 |