dr. M.S. (Matthijs) Berends
195dfb4b91
(v2.1.1.9157) improved as.ab(), fixed knit_print of antibiogram
2025-02-26 13:27:20 +01:00
dr. M.S. (Matthijs) Berends
aa8f6af185
(v2.1.1.9155) new mic_p50() and mic_p90() - updated AMR intro
2025-02-23 11:18:08 +01:00
dr. M.S. (Matthijs) Berends
d94efb0f5e
(v2.1.1.9147) scale fixes and WISCA update, fix conserved capped values
2025-02-14 14:16:46 +01:00
dr. M.S. (Matthijs) Berends
bd2887bcd4
(v2.1.1.9146) new scale_*_sir() functions
2025-02-13 19:47:57 +01:00
dr. M.S. (Matthijs) Berends
07757c933c
(v2.1.1.9144) new MIC scales and fix for rescale_mic()
2025-02-11 08:48:37 +01:00
dr. M.S. (Matthijs) Berends
8ba2e4ed94
(v2.1.1.9141) new AMR selectors, eucast overwrite arg
2025-02-07 18:01:22 +01:00
dr. M.S. (Matthijs) Berends
baea4323c7
(v2.1.1.9140) WISCA fix
2025-02-05 20:48:35 +01:00
dr. M.S. (Matthijs) Berends
7accf6ff13
(v2.1.1.9127) unit tests
2025-01-27 10:46:43 +01:00
dr. M.S. (Matthijs) Berends
66833b4f5a
(v2.1.1.9126) implemented WISCA! Also added top_n_microorganisms() and fixed Python wrapper
2025-01-26 23:01:17 +01:00
dr. M.S. (Matthijs) Berends
92c4fc0f94
(v2.1.1.9125) replace 'antibiotic selectors' with 'antimicrobial selectors'
2025-01-17 12:09:39 +01:00
dr. M.S. (Matthijs) Berends
08ddbaa930
(v2.1.1.9123) add EFF code to antibiotics data set
2025-01-15 16:14:09 +01:00
dr. M.S. (Matthijs) Berends
0488d00f20
(v2.1.1.9111) add betalactams_with_inhibitor(), fixes #175
2024-12-06 15:44:20 +01:00
dr. M.S. (Matthijs) Berends
640888f408
(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
2024-07-16 14:53:17 +02:00
dr. M.S. (Matthijs) Berends
68f7795481
(v2.1.1.9052) unit test fix
2024-06-16 20:53:50 +02:00
dr. M.S. (Matthijs) Berends
bdbf5198a2
(v2.1.1.9050) vctrs fix for sir, small documentation fixes
2024-06-15 15:33:49 +02:00
dr. M.S. (Matthijs) Berends
31207952d3
(v2.1.1.9043) fix sir translation with as.double
2024-06-10 10:34:45 +02:00
dr. M.S. (Matthijs) Berends
af74e1d4f2
(v2.1.1.9041) antibiotics update
2024-06-08 17:35:25 +02:00
dr. M.S. (Matthijs) Berends
c3ce1b551d
rename limit_mic_range() to rescale_mic()
2024-05-24 15:07:41 +02:00
dr. M.S. (Matthijs) Berends
2899b3c840
new mo_group_members()
2024-04-19 10:18:21 +02:00
dr. M.S. (Matthijs) Berends
94e9a4d99b
update MIC implementation
2024-04-07 20:22:59 +02:00
dr. M.S. (Matthijs) Berends
7be4dabbc0
support veterinary MIC/disk translation
2024-02-24 15:16:52 +01:00
dr. M.S. (Matthijs) Berends
c7461766ce
Remove RSI from package, add extra MIC scale functions
2023-12-03 11:34:48 +01:00
dr. M.S. (Matthijs) Berends
6f417d0ef2
add scale_x_mic()
2023-12-03 01:06:00 +01:00
dr. M.S. (Matthijs) Berends
7cda9e575b
prepare for CRAN
2023-10-20 14:51:48 +02:00
dr. M.S. (Matthijs) Berends
91fa73dedf
add oxygen tolerance
2023-05-11 21:56:27 +02:00
dr. M.S. (Matthijs) Berends
e70f2cd32c
knitr format
2023-02-23 16:27:40 +01:00
dr. M.S. (Matthijs) Berends
bc434db835
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
dr. M.S. (Matthijs) Berends
1a0dc4bf46
revert back to pre-antibiogram
2023-02-09 13:07:39 +01:00
dr. M.S. (Matthijs) Berends
9e99e66f01
use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR
2023-01-21 23:47:20 +01:00
dr. M.S. (Matthijs) Berends
86e28bafce
add mo_pathogenicity
2023-01-06 13:35:37 +01:00
dr. M.S. (Matthijs) Berends
f619fb683b
support new mo codes
2022-12-27 15:16:15 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support ( #77 )
2022-11-13 08:46:10 +01:00
dr. M.S. (Matthijs) Berends
faca6d608a
mean AMR distance
2022-10-21 16:02:14 +02:00
dr. M.S. (Matthijs) Berends
178ab5e5ff
mean AMR distance
2022-10-21 15:59:31 +02:00
dr. M.S. (Matthijs) Berends
aa2c0639d0
add confidence intervals ( fixed #70 ), remove combine_IR
2022-10-20 16:08:01 +02:00
dr. M.S. (Matthijs) Berends
82e3198315
add add_custom_antimicrobials()
2022-10-10 20:20:39 +02:00
dr. M.S. (Matthijs) Berends
43c638d122
add mo_current()
2022-10-10 10:12:08 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
dr. M.S. (Matthijs) Berends
63fe160322
new rsi_interpretation_history
2022-09-01 15:20:57 +02:00
dr. M.S. (Matthijs) Berends
3fca703fbf
new AMR distance function
2022-08-30 21:48:02 +02:00
dr. M.S. (Matthijs) Berends
3f2f60ab77
language updates
2022-08-19 12:33:14 +02:00
dr. M.S. (Matthijs) Berends
152db9d1b5
(v1.8.1.9002) fix for table() on MICs
2022-05-09 17:08:40 +02:00
dr. M.S. (Matthijs) Berends
578e7dfee9
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
dr. M.S. (Matthijs) Berends
56f1ce328a
(v1.7.1.9067) Support for Swedish and Russian
2021-12-12 09:42:03 +01:00
dr. M.S. (Matthijs) Berends
e18c49ed93
(v1.7.1.9063) not_intrinsic_resistant
2021-12-09 10:48:25 +01:00
dr. M.S. (Matthijs) Berends
694cf5ba77
(v1.7.1.9054) mdro() update - fixes #49 , first_isolate() speedup
2021-11-28 23:01:26 +01:00
dr. M.S. (Matthijs) Berends
2ab21b7af3
(v1.7.1.9026) updated DDDs
2021-08-19 23:43:02 +02:00
dr. M.S. (Matthijs) Berends
1b62bab007
(v1.7.1.9025) unit tests
2021-08-18 23:19:38 +02:00
dr. M.S. (Matthijs) Berends
a2d249962f
(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
2021-08-16 21:54:34 +02:00
