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mirror of https://github.com/msberends/AMR.git synced 2024-12-26 06:06:12 +01:00
Commit Graph

709 Commits

Author SHA1 Message Date
50a9f8f0e0 (v2.1.1.9086) website update 2024-10-02 10:20:05 +02:00
681fe011fe (v2.1.1.9082) algorithm updates 2024-09-30 18:46:55 +02:00
ac1c40d8bb (v2.1.1.9081) HUGE microorganisms update for fungi! 2024-09-29 22:17:56 +02:00
a558f4c121 (v2.1.1.9080) fix rescale_mic() for an outside MIC range 2024-09-24 22:39:40 +02:00
1ca40e8d67 (v2.1.1.9079) fix for uti in as.sir() 2024-09-24 15:34:12 +02:00
127892430d (v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA 2024-09-22 11:45:51 +02:00
ef8ef28650 (v2.1.1.9072) 2024-09-19 11:46:17 +02:00
ddb23b6e73 (v2.1.1.9071) update veterinary SIR interpretation, add only_fungi 2024-09-19 11:44:56 +02:00
83907c9c65 add files (no-verify) 2024-07-17 14:31:09 +02:00
ff03bb6471 (v2.1.1.9065) unit tests 2 2024-07-16 15:58:18 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
c67d003e9e (v2.1.1.9060) SDD results now in as.sir() 2024-06-19 15:08:23 +02:00
0c3d81f32e (v2.1.1.9059) documentation fix 2024-06-17 22:26:05 +02:00
a4dc37a4e4 (v2.1.1.9057) fix for missing breakpoints 2024-06-17 16:52:12 +02:00
d9e66fb118 (v2.1.1.9056) example fix 2024-06-17 14:52:18 +02:00
1e65b5a289 (v2.1.1.9055) example fix 2024-06-17 14:36:40 +02:00
13baf8d7be (v2.1.1.9054) fix examples 2024-06-17 13:52:02 +02:00
2dee1d71dc (v2.1.1.9053) add verbose to as.sir(), unit test fix 2024-06-17 10:38:45 +02:00
68f7795481 (v2.1.1.9052) unit test fix 2024-06-16 20:53:50 +02:00
4ffac7e22d (v2.1.1.9051) fix VGS mo code 2024-06-16 11:28:56 +02:00
bdbf5198a2 (v2.1.1.9050) vctrs fix for sir, small documentation fixes 2024-06-15 15:33:49 +02:00
9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
de17de1be9 (v2.1.1.9048) vctrs update for sir 2024-06-13 20:55:17 +02:00
3179216c81 (v2.1.1.9047) unit test and index 2024-06-13 07:37:53 +02:00
31207952d3 (v2.1.1.9043) fix sir translation with as.double 2024-06-10 10:34:45 +02:00
a3071cf58b (v2.1.1.9042) update translations and example isolates 2024-06-09 11:31:04 +02:00
af74e1d4f2 (v2.1.1.9041) antibiotics update 2024-06-08 17:35:25 +02:00
c5981cdeb3 fix unit test 2024-06-04 20:17:54 +02:00
7c1b564648 fix SIR interpretation for uti 2024-05-31 21:24:35 +02:00
60c6c21e45 fix SIR interpretation 2024-05-31 09:50:54 +02:00
c3ce1b551d rename limit_mic_range() to rescale_mic() 2024-05-24 15:07:41 +02:00
d214f74e25 allow column name for ab in as.sir() 2024-05-20 21:29:13 +02:00
08a27922a8 new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
2899b3c840 new mo_group_members() 2024-04-19 10:18:21 +02:00
0039cb05d6 update MIC comparisons 2024-04-05 16:44:43 +02:00
bc4f8515e2 new Norwegian link 2024-03-03 23:24:57 +01:00
7be4dabbc0 support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
Emil Rossing
74ea6c8c60
Added support for 'html' in italicize_taxonomy() (#134) 2024-02-13 13:47:07 +01:00
83e92fd88c docu fix 2023-12-04 08:19:02 +01:00
7059568581 fix scale functions 2023-12-03 16:51:54 +01:00
c7461766ce Remove RSI from package, add extra MIC scale functions 2023-12-03 11:34:48 +01:00
6f417d0ef2 add scale_x_mic() 2023-12-03 01:06:00 +01:00
4c11a7bd9c v2.1.1 2023-10-22 15:51:27 +02:00
ca72a646d0 scientific notation for MICs 2023-10-20 15:45:00 +02:00
7cda9e575b prepare for CRAN 2023-10-20 14:51:48 +02:00
7a4628b73f Added C. freundii complex and Y. pseudotuberculosis complex 2023-07-14 10:49:06 +02:00
fd480d1a9a console hyperlink fix 2023-07-14 09:50:13 +02:00
eff164ecb1 indicate unique identifiers 2023-07-12 21:26:32 +02:00
e1b4f99f4f breakpoints fixes 2023-07-12 15:20:04 +01:00
0c46f61260 MO group fixes 2023-07-12 15:04:48 +01:00