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Commit Graph

127 Commits

Author SHA1 Message Date
cf16bc7de1 unit tests 2023-01-06 13:45:20 +01:00
86e28bafce add mo_pathogenicity 2023-01-06 13:35:37 +01:00
51c0f0814e new setup unit tests 2023-01-05 15:03:18 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
e493248ea5 unit test and news file 2022-12-21 09:12:53 +01:00
4c42a43f7d fixes 2022-12-20 22:41:39 +01:00
6f4bb603ec unit tests 2022-12-20 22:18:50 +01:00
23fe427cbc Fixes for Salmonella 2022-12-17 14:31:33 +01:00
e7d7b94b3e no obligatory note on startup 2022-12-09 15:10:49 +01:00
510140fc55 Updated mo_gramstain() to reflect current taxonomy, fixes #83 2022-12-09 10:30:25 +01:00
31fb81c382 revised as.rsi(), fix for mdro() 2022-11-24 20:29:00 +01:00
05d536ebb7 complexes 2022-11-17 15:23:29 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support (#77) 2022-11-13 08:46:10 +01:00
d20caae54b cleanup 2022-10-31 13:25:41 +01:00
796b972f8a extend vctrs support 2022-10-31 11:19:06 +01:00
9444ed6d1d fix antibiotics error 2022-10-30 21:05:46 +01:00
3d9faf89cf ATC and DDD update 2022-10-29 19:01:23 +02:00
6ad7857d39 fix missing R breakpoints 2022-10-29 14:15:23 +02:00
d10651eb26 cleanup 2022-10-22 10:20:09 +02:00
aa2c0639d0 add confidence intervals (fixed #70), remove combine_IR 2022-10-20 16:08:01 +02:00
85e2fbe4a3 remove warnings from unit tests 2022-10-19 11:47:57 +02:00
Dr. Matthijs Berends
fed3b6440f
Unit test fix 2022-10-19 08:14:38 +02:00
f203928f7e coercion fixes 2022-10-19 06:59:36 +02:00
e5e6d2200d fix add manual ab 2022-10-18 22:53:38 +02:00
76bcd3528c move object assignment to AMR_env 2022-10-14 13:02:50 +02:00
82e3198315 add add_custom_antimicrobials() 2022-10-10 20:20:39 +02:00
43c638d122 add mo_current() 2022-10-10 10:12:08 +02:00
b9342d103e fix documentation 2022-10-06 11:33:30 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
63fe160322 new rsi_interpretation_history 2022-09-01 15:20:57 +02:00
3fca703fbf new AMR distance function 2022-08-30 21:48:02 +02:00
c44ddf272f fix for R <= 3.3 2022-08-28 19:34:04 +02:00
71db246d5c unit test fix 2022-08-28 19:17:12 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
7226b70c3d update languages 2022-08-20 20:17:14 +02:00
680e8e7a41 (v1.8.1.9005) as.rsi() fix for EUCAST 2022-05-10 17:01:37 +02:00
d4e22069bc (v1.8.1.9004) fix for table() on MICs 2022-05-09 21:33:27 +02:00
1c891cc90c (v1.8.1.9003) set_mo_source() fix 2022-05-09 20:36:44 +02:00
7b0f1596bd (v1.8.0.9010) as.mo improvement 2022-03-15 17:35:02 +01:00
3b2b2be5f8 (v1.8.0.9002) as.rsi() cleanup, more informative warnings 2022-03-02 15:38:55 +01:00
be792cc9eb (v1.8.0.9000) unit tests for R 3.3 2022-02-01 17:08:10 +01:00
25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
3f4ff260d2 unit test 2021-12-23 15:36:54 +01:00
75dac113b6 (v1.7.1.9077) skimr support only for newer R versions 2021-12-23 13:38:25 +01:00
76dee66852 (v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests 2021-12-14 22:39:23 +01:00
bd4bb1d72f (v1.7.1.9073) as.rsi() fix for UTIs 2021-12-14 21:47:14 +01:00
0cbf8f48b6 (v1.7.1.9071) rsi disk fix 2021-12-13 11:57:34 +01:00
578e7dfee9 (v1.7.1.9070) Better WHONET support 2021-12-13 10:18:28 +01:00
1e66a3daf3 (v1.7.1.9068) new logo, unit tests 2021-12-12 11:07:02 +01:00