|
|
f619fb683b
|
support new mo codes
|
2022-12-27 15:16:15 +01:00 |
|
|
|
f0a2cdbf5e
|
update mo algorithm
|
2022-12-20 16:14:04 +01:00 |
|
|
|
b1b7534c78
|
incorporate Bartlett et al (2022)
|
2022-12-19 15:32:41 +01:00 |
|
|
|
23fe427cbc
|
Fixes for Salmonella
|
2022-12-17 14:31:33 +01:00 |
|
|
|
5f3a7694aa
|
microorganisms update, added Salmonella groups
|
2022-12-16 16:10:43 +01:00 |
|
|
|
8da2467209
|
updated taxonomy
|
2022-12-12 00:14:56 +01:00 |
|
|
|
eed1c14b96
|
website update
|
2022-12-11 11:44:29 +01:00 |
|
|
|
b1ead9c0fe
|
doc update
|
2022-12-10 10:09:57 +01:00 |
|
|
|
56dad34e68
|
update prevalence with new phyla
|
2022-12-09 13:37:08 +01:00 |
|
|
|
510140fc55
|
Updated mo_gramstain() to reflect current taxonomy, fixes #83
|
2022-12-09 10:30:25 +01:00 |
|
|
|
31fb81c382
|
revised as.rsi(), fix for mdro()
|
2022-11-24 20:29:00 +01:00 |
|
|
|
f6862a139d
|
expert rules 12.0
|
2022-11-14 15:20:39 +01:00 |
|
|
|
7ca44fb756
|
cleanup and new intro logo
|
2022-11-13 13:44:25 +01:00 |
|
Dr. Matthijs Berends
|
496c08d851
|
Implement extensive support for antiviral agents support (#77)
|
2022-11-13 08:46:10 +01:00 |
|
|
|
2d90218305
|
documentation fix
|
2022-11-05 12:06:40 +01:00 |
|
|
|
8dc94a9eda
|
documentation fix
|
2022-11-05 09:31:19 +01:00 |
|
|
|
3b652983b7
|
documentation fix
|
2022-11-05 08:18:06 +01:00 |
|
|
|
9444ed6d1d
|
fix antibiotics error
|
2022-10-30 21:05:46 +01:00 |
|
|
|
d40e0ef20b
|
completely updated antibiotics
|
2022-10-30 14:31:45 +01:00 |
|
|
|
3d9faf89cf
|
ATC and DDD update
|
2022-10-29 19:01:23 +02:00 |
|
|
|
6ad7857d39
|
fix missing R breakpoints
|
2022-10-29 14:15:23 +02:00 |
|
|
|
c2801ba7a1
|
new rsi_translation
|
2022-10-22 22:00:15 +02:00 |
|
|
|
d0b54f640c
|
Update contributors list
|
2022-10-21 21:56:54 +02:00 |
|
|
|
faca6d608a
|
mean AMR distance
|
2022-10-21 16:02:14 +02:00 |
|
|
|
178ab5e5ff
|
mean AMR distance
|
2022-10-21 15:59:31 +02:00 |
|
|
|
4bebba3610
|
fix for scoped dplyr verbs
|
2022-10-21 15:13:19 +02:00 |
|
|
|
aa2c0639d0
|
add confidence intervals (fixed #70), remove combine_IR
|
2022-10-20 16:08:01 +02:00 |
|
|
|
85e2fbe4a3
|
remove warnings from unit tests
|
2022-10-19 11:47:57 +02:00 |
|
|
|
ad68b50ecd
|
custom ab fix
|
2022-10-15 15:20:13 +02:00 |
|
|
|
76bcd3528c
|
move object assignment to AMR_env
|
2022-10-14 13:02:50 +02:00 |
|
|
|
dfae4c7e7d
|
fast-forward from pull
Merge branch 'main' of https://github.com/msberends/AMR into main
# Conflicts:
# DESCRIPTION
# R/add_custom_antimicrobials.R
|
2022-10-11 10:53:51 +02:00 |
|
|
|
33227a5d90
|
support ab selectors for manual AB codes
|
2022-10-11 10:49:55 +02:00 |
|
|
|
57d66cd9d0
|
doc fix
|
2022-10-10 21:38:39 +02:00 |
|
|
|
955f9d7020
|
documentation fix
|
2022-10-10 21:03:39 +02:00 |
|
|
|
82e3198315
|
add add_custom_antimicrobials()
|
2022-10-10 20:20:39 +02:00 |
|
|
|
4fe90092c7
|
fix for NA in as.ab()
|
2022-10-10 15:44:59 +02:00 |
|
|
|
43c638d122
|
add mo_current()
|
2022-10-10 10:12:08 +02:00 |
|
|
|
b753b84128
|
fix for mo type translation
|
2022-10-06 12:11:51 +02:00 |
|
|
|
b9342d103e
|
fix documentation
|
2022-10-06 11:33:30 +02:00 |
|
Dr. Matthijs Berends
|
cd2acc4a29
|
New mo algorithm, prepare for 2.0
|
2022-10-05 09:12:22 +02:00 |
|
|
|
63fe160322
|
new rsi_interpretation_history
|
2022-09-01 15:20:57 +02:00 |
|
|
|
3fca703fbf
|
new AMR distance function
|
2022-08-30 21:48:02 +02:00 |
|
|
|
fbd5d32541
|
small fixes
|
2022-08-29 09:35:36 +02:00 |
|
|
|
e7af5fc716
|
fix AMR vignette
|
2022-08-28 22:38:08 +02:00 |
|
|
|
4d050aef7c
|
styled, unit test fix
|
2022-08-28 10:31:50 +02:00 |
|
|
|
303d61b473
|
new tibble export
|
2022-08-27 20:49:37 +02:00 |
|
|
|
bdbc112f99
|
website update
|
2022-08-21 17:22:34 +02:00 |
|
|
|
d6676e9443
|
disk documentation fix
|
2022-08-21 16:52:09 +02:00 |
|
|
|
952d16de33
|
new, automated website
|
2022-08-21 16:37:20 +02:00 |
|
|
|
7226b70c3d
|
update languages
|
2022-08-20 20:17:14 +02:00 |
|
