 dr. M.S. (Matthijs) Berends
|
08a27922a8
|
new SDD and N for `as.sir()`
|
2024-05-20 15:27:04 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2899b3c840
|
new `mo_group_members()`
|
2024-04-19 10:18:21 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0039cb05d6
|
update MIC comparisons
|
2024-04-05 16:44:43 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
bc4f8515e2
|
new Norwegian link
|
2024-03-03 23:24:57 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
7be4dabbc0
|
support veterinary MIC/disk translation
|
2024-02-24 15:16:52 +01:00 |
Emil Rossing
|
74ea6c8c60
|
Added support for 'html' in italicize_taxonomy() (#134)
|
2024-02-13 13:47:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
83e92fd88c
|
docu fix
|
2023-12-04 08:19:02 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
7059568581
|
fix scale functions
|
2023-12-03 16:51:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c7461766ce
|
Remove RSI from package, add extra MIC scale functions
|
2023-12-03 11:34:48 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6f417d0ef2
|
add `scale_x_mic()`
|
2023-12-03 01:06:00 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
4c11a7bd9c
|
v2.1.1
|
2023-10-22 15:51:27 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ca72a646d0
|
scientific notation for MICs
|
2023-10-20 15:45:00 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7cda9e575b
|
prepare for CRAN
|
2023-10-20 14:51:48 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7a4628b73f
|
Added C. freundii complex and Y. pseudotuberculosis complex
|
2023-07-14 10:49:06 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
fd480d1a9a
|
console hyperlink fix
|
2023-07-14 09:50:13 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
eff164ecb1
|
indicate unique identifiers
|
2023-07-12 21:26:32 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e1b4f99f4f
|
breakpoints fixes
|
2023-07-12 15:20:04 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
0c46f61260
|
MO group fixes
|
2023-07-12 15:04:48 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
9cf054903b
|
version bump
|
2023-07-12 11:42:29 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
8df1cd8d97
|
interpretation fixes
|
2023-07-11 09:50:45 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
dab20c09f6
|
unit test
|
2023-07-10 18:30:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a4e2e25e3f
|
reftbl in plots, speedup for as.sir() and mo_validate
|
2023-07-10 16:43:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
70c601ca11
|
breakpoints UTI interpretation fix
|
2023-07-10 13:41:52 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
acb534102b
|
new species groups, updated clinical breakpoints
|
2023-07-08 17:30:05 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2d97cca6d9
|
fix `reference_df` endless loop
|
2023-06-26 13:52:02 +02:00 |
Dr. Matthijs Berends
|
f065945d7b
|
Update clinical breakpoints and fix some `as.mo()` bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
|
2023-06-22 15:10:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9591688811
|
documentation update
|
2023-05-27 10:39:22 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e1966503ee
|
unit testing R4.3
|
2023-05-26 20:37:00 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
766db4e21f
|
as.mo fix
|
2023-05-26 19:20:21 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c6135d2082
|
updated microorganism codes
|
2023-05-26 16:10:01 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0bcf55d3b6
|
improve `as.mo()`
|
2023-05-24 15:55:53 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
91fa73dedf
|
add oxygen tolerance
|
2023-05-11 21:56:27 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
bf08d136a0
|
fix coercing `NA` to custom codes, fixes #107
|
2023-05-08 13:04:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9148a2dcf4
|
fix `mo_rank()` for 'unknown' MOs
|
2023-04-20 15:20:41 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
02322ac2ee
|
Fix PK/PD breakpoints
|
2023-04-19 00:31:31 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ed70f95380
|
Fix clinical breakpoints
|
2023-04-14 23:14:34 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
147f9112e9
|
Fix some WHONET codes
|
2023-04-14 11:12:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
549790c2a6
|
website
|
2023-03-20 21:59:50 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c28cfa3a77
|
fix documentation
|
2023-03-16 08:55:37 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
dd7cc86485
|
help page %like%
|
2023-03-14 19:49:50 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
80cfc503c2
|
check for 2.0
|
2023-03-12 13:02:37 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
7ad8635994
|
documentation for 'data.table' AB selectors
|
2023-03-11 16:54:02 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
45e840c02f
|
update NEWS
|
2023-03-11 14:43:31 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
262598b8d7
|
support for old rsi arguments
|
2023-03-11 14:24:34 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
1d3d7d40bc
|
get episode unit tests
|
2023-02-24 19:54:56 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2c5a9bb622
|
new relative episode determination in `get_episode()`, fix for plotting disk/MIC values
|
2023-02-24 17:06:30 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
92029c9e95
|
remove note
|
2023-02-24 10:31:36 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
049baf0a71
|
fix for antibiograms on R < 3.5
|
2023-02-24 09:43:10 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e70f2cd32c
|
knitr format
|
2023-02-23 16:27:40 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
a84101db08
|
N for only 1 AB in
|
2023-02-22 16:26:13 +01:00 |