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dr. M.S. (Matthijs) Berends dfae4c7e7d fast-forward from pull 
Merge branch 'main' of https://github.com/msberends/AMR into main

# Conflicts:
#	DESCRIPTION
#	R/add_custom_antimicrobials.R
 2022-10-11 10:53:51 +02:00
dr. M.S. (Matthijs) Berends 33227a5d90 support ab selectors for manual AB codes 2022-10-11 10:49:55 +02:00
dr. M.S. (Matthijs) Berends 57d66cd9d0 doc fix 2022-10-10 21:38:39 +02:00
dr. M.S. (Matthijs) Berends 955f9d7020 documentation fix 2022-10-10 21:03:39 +02:00
dr. M.S. (Matthijs) Berends 3deeedc4b6 website fix 2022-10-10 20:21:41 +02:00
dr. M.S. (Matthijs) Berends 82e3198315 add `add_custom_antimicrobials()` 2022-10-10 20:20:39 +02:00
dr. M.S. (Matthijs) Berends 4fe90092c7 fix for `NA` in `as.ab()` 2022-10-10 15:44:59 +02:00
dr. M.S. (Matthijs) Berends 43c638d122 add `mo_current()` 2022-10-10 10:12:08 +02:00
dr. M.S. (Matthijs) Berends b753b84128 fix for mo type translation 2022-10-06 12:11:51 +02:00
dr. M.S. (Matthijs) Berends b9342d103e fix documentation 2022-10-06 11:33:30 +02:00
dr. M.S. (Matthijs) Berends 369e7545da and yet another website fix 2022-10-05 10:17:53 +02:00
dr. M.S. (Matthijs) Berends bc44da0e38 website fix 2022-10-05 10:07:27 +02:00
dr. M.S. (Matthijs) Berends def9fc0d75 fix website 2022-10-05 09:33:21 +02:00
Dr. Matthijs Berends cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
dr. M.S. (Matthijs) Berends 63fe160322 new rsi_interpretation_history 2022-09-01 15:20:57 +02:00
dr. M.S. (Matthijs) Berends 3fca703fbf new AMR distance function 2022-08-30 21:48:02 +02:00
dr. M.S. (Matthijs) Berends fbd5d32541 small fixes 2022-08-29 09:35:36 +02:00
dr. M.S. (Matthijs) Berends e7af5fc716 fix AMR vignette 2022-08-28 22:38:08 +02:00
dr. M.S. (Matthijs) Berends 2ed5f13880 Fixes #57 2022-08-28 21:13:26 +02:00
dr. M.S. (Matthijs) Berends 1e4eaf23f2 unit tests 2022-08-28 20:49:04 +02:00
dr. M.S. (Matthijs) Berends 21b4552f5a unit test fix 2022-08-28 20:10:05 +02:00
dr. M.S. (Matthijs) Berends c44ddf272f fix for R <= 3.3 2022-08-28 19:34:04 +02:00
dr. M.S. (Matthijs) Berends 71db246d5c unit test fix 2022-08-28 19:17:12 +02:00
dr. M.S. (Matthijs) Berends f781998904 amoxicillin interpretation fix 2022-08-28 11:17:53 +02:00
dr. M.S. (Matthijs) Berends 4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
dr. M.S. (Matthijs) Berends 4cb1db4554 data export 2022-08-27 20:51:26 +02:00
dr. M.S. (Matthijs) Berends 303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
dr. M.S. (Matthijs) Berends 164886f50b new workflow files 2022-08-26 23:25:37 +02:00
dr. M.S. (Matthijs) Berends 3cef2ea286 restore LFS 2022-08-26 23:21:31 +02:00
dr. M.S. (Matthijs) Berends 3864ab2fb8 Feather and Parquet files 2022-08-26 22:25:15 +02:00
dr. M.S. (Matthijs) Berends 4da32e3d40 set up Git LFS for large files 2022-08-26 14:02:08 +02:00
dr. M.S. (Matthijs) Berends e05d0365a9 website update 2022-08-25 19:19:16 +02:00
dr. M.S. (Matthijs) Berends 5501cffbb0 website update 2022-08-25 19:18:48 +02:00
dr. M.S. (Matthijs) Berends d3000a9492 website update 2022-08-25 19:16:16 +02:00
dr. M.S. (Matthijs) Berends 2cbce2cefa website update 2022-08-25 19:14:07 +02:00
dr. M.S. (Matthijs) Berends bdbc112f99 website update 2022-08-21 17:22:34 +02:00
dr. M.S. (Matthijs) Berends d6676e9443 disk documentation fix 2022-08-21 16:52:09 +02:00
dr. M.S. (Matthijs) Berends 952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
dr. M.S. (Matthijs) Berends 7226b70c3d update languages 2022-08-20 20:17:14 +02:00
dr. M.S. (Matthijs) Berends ab97268f4c (v1.8.1.9014) add Toxoplasma 2022-08-12 23:27:15 +02:00
dr. M.S. (Matthijs) Berends 7f981e7778 (v1.8.1.9013) add Toxoplasma 2022-06-10 13:15:23 +02:00
dr. M.S. (Matthijs) Berends b84d647cac (v1.8.1.9012) update prevalence of some genera 2022-06-03 13:28:55 +02:00
dr. M.S. (Matthijs) Berends 1b84564d36 (v1.8.1.9011) update prevalence of some genera 2022-06-03 12:43:25 +02:00
dr. M.S. (Matthijs) Berends 70a07bad39 (v1.8.1.9010) random when pkg not loaded 2022-05-16 12:52:50 +02:00
dr. M.S. (Matthijs) Berends 2c5bc73ed6 (v1.8.1.9009) random when pkg not loaded 2022-05-16 09:29:46 +02:00
dr. M.S. (Matthijs) Berends 58ed15e7ac (v1.8.1.9008) website update 2022-05-11 10:26:58 +02:00
dr. M.S. (Matthijs) Berends 6de5375256 (v1.8.1.9007) website update 2022-05-11 10:10:31 +02:00
dr. M.S. (Matthijs) Berends 859224e9d0 (v1.8.1.9006) added EUCAST 2022 and CLSI 2022 2022-05-10 21:34:30 +02:00
dr. M.S. (Matthijs) Berends 680e8e7a41 (v1.8.1.9005) as.rsi() fix for EUCAST 2022-05-10 17:01:37 +02:00
dr. M.S. (Matthijs) Berends d4e22069bc (v1.8.1.9004) fix for table() on MICs 2022-05-09 21:33:27 +02:00
dr. M.S. (Matthijs) Berends 1c891cc90c (v1.8.1.9003) set_mo_source() fix 2022-05-09 20:36:44 +02:00
dr. M.S. (Matthijs) Berends 152db9d1b5 (v1.8.1.9002) fix for table() on MICs 2022-05-09 17:08:40 +02:00
dr. M.S. (Matthijs) Berends 4754848e96 (v1.8.1.9001) update unit tests, fixes #53 2022-04-08 11:02:45 +02:00
dr. M.S. (Matthijs) Berends ccb09706e4 v1.8.1 2022-03-24 23:05:04 +01:00
dr. M.S. (Matthijs) Berends 7b0f1596bd (v1.8.0.9010) as.mo improvement 2022-03-15 17:35:02 +01:00
dr. M.S. (Matthijs) Berends 1b0983e382 (v1.8.1) prerelease 1.8.1 2022-03-14 16:36:10 +01:00
dr. M.S. (Matthijs) Berends 08d387b5ce (v1.8.0.9005) as.rsi() fix 2022-03-10 19:33:25 +01:00
dr. M.S. (Matthijs) Berends ad82bb4ce0 (v1.8.0.9004) MIC printing in tibbles 2022-03-03 21:11:02 +01:00
dr. M.S. (Matthijs) Berends dedbe92322 (v1.8.0.9003) deps update 2022-03-02 23:16:37 +01:00
dr. M.S. (Matthijs) Berends 3b2b2be5f8 (v1.8.0.9002) as.rsi() cleanup, more informative warnings 2022-03-02 15:38:55 +01:00
dr. M.S. (Matthijs) Berends 18e8525d10 (v1.8.0.9001) as.mo improvement, fixes #52 2022-02-26 21:58:23 +01:00
dr. M.S. (Matthijs) Berends be792cc9eb (v1.8.0.9000) unit tests for R 3.3 2022-02-01 17:08:10 +01:00
dr. M.S. (Matthijs) Berends 25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
dr. M.S. (Matthijs) Berends 75dac113b6 (v1.7.1.9077) skimr support only for newer R versions 2021-12-23 13:38:25 +01:00
dr. M.S. (Matthijs) Berends d9274bcd0a (v1.7.1.9075) assignment operator 2021-12-14 22:59:27 +01:00
dr. M.S. (Matthijs) Berends 76dee66852 (v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests 2021-12-14 22:39:23 +01:00
dr. M.S. (Matthijs) Berends bd4bb1d72f (v1.7.1.9073) as.rsi() fix for UTIs 2021-12-14 21:47:14 +01:00
dr. M.S. (Matthijs) Berends 5eef01165e (v1.7.1.9072) as.rsi() fix for UTIs 2021-12-14 12:33:29 +01:00
dr. M.S. (Matthijs) Berends 0cbf8f48b6 (v1.7.1.9071) rsi disk fix 2021-12-13 11:57:34 +01:00
dr. M.S. (Matthijs) Berends 578e7dfee9 (v1.7.1.9070) Better WHONET support 2021-12-13 10:18:28 +01:00
dr. M.S. (Matthijs) Berends f90e27c1b0 (v1.7.1.9069) CLSI 2021 support 2021-12-12 11:36:58 +01:00
dr. M.S. (Matthijs) Berends 1e66a3daf3 (v1.7.1.9068) new logo, unit tests 2021-12-12 11:07:02 +01:00
dr. M.S. (Matthijs) Berends 56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
dr. M.S. (Matthijs) Berends 5b5f70a103 (v1.7.1.9066) mdro EUCAST v3.3 2021-12-11 15:29:30 +01:00
dr. M.S. (Matthijs) Berends e0a2634f14 (v1.7.1.9065) unit tests 2021-12-11 15:13:44 +01:00
dr. M.S. (Matthijs) Berends 77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
dr. M.S. (Matthijs) Berends e18c49ed93 (v1.7.1.9063) not_intrinsic_resistant 2021-12-09 10:48:25 +01:00
dr. M.S. (Matthijs) Berends e63defe324 (v1.7.1.9062) website update 2021-12-06 11:12:30 +01:00
dr. M.S. (Matthijs) Berends 1fa3fc6af2 (v1.7.1.9061) bugfix set_ab_names 2021-12-05 23:21:59 +01:00
dr. M.S. (Matthijs) Berends 75965124ef (v1.7.1.9060) bugfix set_ab_names 2021-12-05 23:11:10 +01:00
dr. M.S. (Matthijs) Berends b747036deb (v1.7.1.9059) bugfix set_ab_names 2021-12-05 22:59:06 +01:00
dr. M.S. (Matthijs) Berends 7965468ccd (v1.7.1.9058) vars selection for set_ab_names() 2021-12-05 22:06:45 +01:00
dr. M.S. (Matthijs) Berends 3abe61fd61 (v1.7.1.9057) NAs in get_episode() 2021-12-02 13:32:14 +01:00
dr. M.S. (Matthijs) Berends 5375f75829 (v1.7.1.9056) unit tests 2021-11-29 11:55:18 +01:00
dr. M.S. (Matthijs) Berends c8698347cb (v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers 2021-11-29 10:38:38 +01:00
dr. M.S. (Matthijs) Berends 694cf5ba77 (v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup 2021-11-28 23:01:26 +01:00
dr. M.S. (Matthijs) Berends 9a2c431e16 (v1.7.1.9053) fortify() methods 2021-11-01 13:51:13 +01:00
dr. M.S. (Matthijs) Berends 91149d6d35 (v1.7.1.9052) eucast-update 2021-10-06 16:22:36 +02:00
dr. M.S. (Matthijs) Berends 37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
dr. M.S. (Matthijs) Berends 8f5e5a3fc2 (v1.7.1.9050) fix for as.mo 2021-10-05 14:00:35 +02:00
dr. M.S. (Matthijs) Berends 2bcf28281d (v1.7.1.9049) unit tests 2021-10-05 09:58:08 +02:00
dr. M.S. (Matthijs) Berends d1b16ce641 (v1.7.1.9048) unit tests 2021-10-04 10:22:10 +02:00
dr. M.S. (Matthijs) Berends 9b97233be2 (v1.7.1.9046) unit tests 2021-10-03 13:50:52 +02:00
dr. M.S. (Matthijs) Berends b0c84cce9c (v1.7.1.9045) unit tests 2021-09-29 20:24:02 +02:00
dr. M.S. (Matthijs) Berends 557ce74fd7 (v1.7.1.9044) unit tests 2021-09-29 20:13:52 +02:00
dr. M.S. (Matthijs) Berends 45f597cac5 (v1.7.1.9043) unit tests 2021-09-29 20:10:44 +02:00
dr. M.S. (Matthijs) Berends e8d3ce05d7 (v1.7.1.9041) new GH actions, branches rename 2021-09-29 16:36:03 +02:00
dr. M.S. (Matthijs) Berends 93a4734b44 (v1.7.1.9040) Support for Danish 2021-09-29 12:12:35 +02:00
dr. M.S. (Matthijs) Berends 5f433d6e5c (v1.7.1.9039) reinitiate all units tests 2021-09-03 13:08:36 +02:00
dr. M.S. (Matthijs) Berends 81a1a432bd (v1.7.1.9038) dplyr grouping fix on windows? 2021-09-01 16:52:55 +02:00
dr. M.S. (Matthijs) Berends bcab74fb6d (v1.7.1.9037) dplyr grouping fix on windows? 2021-08-31 17:06:44 +02:00
dr. M.S. (Matthijs) Berends 953dfac9e5 (v1.7.1.9036) dplyr grouping fix on windows? 2021-08-30 16:49:46 +02:00
dr. M.S. (Matthijs) Berends 986bd826ee (v1.7.1.9035) dplyr grouping fix on windows? 2021-08-30 15:43:12 +02:00
dr. M.S. (Matthijs) Berends 1daa117e9f (v1.7.1.9033) dplyr grouping fix on windows? 2021-08-30 15:01:32 +02:00
dr. M.S. (Matthijs) Berends 6ca6a3f6df (v1.7.1.9032) dplyr grouping fix on windows? 2021-08-30 14:17:27 +02:00
dr. M.S. (Matthijs) Berends e6ce25162e (v1.7.1.9031) dplyr grouping fix on windows? 2021-08-30 14:07:46 +02:00
dr. M.S. (Matthijs) Berends d6a916d70b (v1.7.1.9030) unit test 2021-08-29 23:50:45 +02:00
dr. M.S. (Matthijs) Berends f0a4d29fe0 (v1.7.1.9029) unit test fix 2021-08-21 10:20:05 +02:00
dr. M.S. (Matthijs) Berends e4de7f5055 (v1.7.1.9028) fix unit test 2021-08-20 00:08:31 +02:00
dr. M.S. (Matthijs) Berends 41f35c73cd (v1.7.1.9027) fix unit test 2021-08-19 23:56:18 +02:00
dr. M.S. (Matthijs) Berends 2ab21b7af3 (v1.7.1.9026) updated DDDs 2021-08-19 23:43:02 +02:00
dr. M.S. (Matthijs) Berends 1b62bab007 (v1.7.1.9025) unit tests 2021-08-18 23:19:38 +02:00
dr. M.S. (Matthijs) Berends a44283f998 (v1.7.1.9024) unit tests 2021-08-17 14:34:11 +02:00
dr. M.S. (Matthijs) Berends a2d249962f (v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47 2021-08-16 21:54:34 +02:00
dr. M.S. (Matthijs) Berends 4e1efd902c (v1.7.1.9022) rely on vctrs for ab selectors 2021-07-23 21:42:11 +02:00
dr. M.S. (Matthijs) Berends 0ec81cc12e (v1.7.1.9021) autoplot generics 2021-07-12 22:12:28 +02:00
dr. M.S. (Matthijs) Berends 6838f03bde (v1.7.1.9020) autoplot generics 2021-07-12 20:24:49 +02:00
dr. M.S. (Matthijs) Berends fc946564d1 (v1.7.1.9019) Morganella MIC in EUCAST 2021 2021-07-12 12:28:41 +02:00
dr. M.S. (Matthijs) Berends 5ccb330b42 (v1.7.1.9018) translation fix 2021-07-11 13:20:45 +02:00
dr. M.S. (Matthijs) Berends 39d97ab53b (v1.7.1.9017) ab selector error 2021-07-08 23:05:45 +02:00
dr. M.S. (Matthijs) Berends b228eb1536 (v1.7.1.9016) only_treatable ab selectors 2021-07-08 22:23:28 +02:00
dr. M.S. (Matthijs) Berends 625a6fb304 (v1.7.1.9015) removed S3 taxonomic_name again 2021-07-07 20:34:05 +02:00
dr. M.S. (Matthijs) Berends ad10693a1a (v1.7.1.9014) rep() for S3 classes 2021-07-06 16:35:14 +02:00
dr. M.S. (Matthijs) Berends 16b4c74d44 (v1.7.1.9013) temp fix for ggplot2 bug #4511 2021-07-04 22:10:46 +02:00
dr. M.S. (Matthijs) Berends 350dbe6a11 (v1.7.1.9012) update unit tests 2021-07-04 20:25:30 +02:00
dr. M.S. (Matthijs) Berends 5b5741f681 (v1.7.1.9011) subsetting taxonomy fix 2021-07-04 15:26:50 +02:00
dr. M.S. (Matthijs) Berends 3bd50710e8 (v1.7.1.9010) fix for count_* and proportion_* 2021-07-04 12:00:41 +02:00
dr. M.S. (Matthijs) Berends 3e26929838 (v1.7.1.9009) fix for ab class selectors 2021-07-03 21:56:53 +02:00
dr. M.S. (Matthijs) Berends c8491d07f8 (v1.7.1.9008) unit tests 2021-06-23 10:19:38 +02:00
dr. M.S. (Matthijs) Berends 95050ee3e0 (v1.7.1.9007) Updated antibiotics dataset, fixes #41 2021-06-23 10:03:17 +02:00
dr. M.S. (Matthijs) Berends 1dc9d237f6 (v1.7.1.9006) unit tests 2021-06-22 13:09:41 +02:00
dr. M.S. (Matthijs) Berends d04e83f494 (v1.7.1.9005) ab class selectors for R-3.0 and R-3.1 2021-06-22 12:16:42 +02:00
dr. M.S. (Matthijs) Berends c44d9392ca (v1.7.1.9004) more extensive unit tests 2021-06-15 10:51:04 +02:00
dr. M.S. (Matthijs) Berends 556bf0014d (v1.7.1.9003) unit test 2021-06-14 22:37:05 +02:00
dr. M.S. (Matthijs) Berends 99be4c7e7e (v1.7.1.9002) ab class selectors update 2021-06-14 22:04:04 +02:00
dr. M.S. (Matthijs) Berends 683a0e748a (v1.7.1.9001) unit tests 2021-06-05 15:12:01 +02:00
dr. M.S. (Matthijs) Berends 1908e7cc7a (v1.7.1.9000) ab_class update, unit tests 2021-06-04 21:07:55 +02:00
dr. M.S. (Matthijs) Berends 7e70403efb (v1.7.1) New CRAN release 2021-06-03 15:19:21 +02:00
dr. M.S. (Matthijs) Berends 279376fccb (v1.7.0.9002) old MO codes 2021-06-01 16:36:33 +02:00
dr. M.S. (Matthijs) Berends bef0f42f66 (v1.7.0.9001) CLSI 2020 guideline 2021-06-01 15:33:06 +02:00
dr. M.S. (Matthijs) Berends f406319503 (v1.7.0.9000) package size 2021-05-30 22:14:38 +02:00
dr. M.S. (Matthijs) Berends ac73a8d849 v1.7.0 2021-05-24 15:29:17 +02:00
dr. M.S. (Matthijs) Berends e5599bc694 (v1.6.0.9065) unit tests 2021-05-24 11:01:32 +02:00
dr. M.S. (Matthijs) Berends 4fbf9e1720 (v1.6.0.9064) prepare new release 2021-05-24 09:34:08 +02:00
dr. M.S. (Matthijs) Berends a13fd98e8b (v1.6.0.9063) prepare new release 2021-05-24 09:00:11 +02:00
dr. M.S. (Matthijs) Berends 06302d296a (v1.6.0.9062) code consistency 2021-05-24 00:06:28 +02:00
dr. M.S. (Matthijs) Berends 07939b1a14 (v1.6.0.9061) age() update 2021-05-23 23:11:16 +02:00
dr. M.S. (Matthijs) Berends fa2f5214b9 (v1.6.0.9060) unit tests 2021-05-22 10:05:59 +02:00
dr. M.S. (Matthijs) Berends 0b1f59edec (v1.6.0.9058) unit tests 2021-05-22 08:58:51 +02:00
dr. M.S. (Matthijs) Berends 65a8b58aa6 (v1.6.0.9056) support codecov again 2021-05-21 20:30:48 +02:00
dr. M.S. (Matthijs) Berends b210f1327c (v1.6.0.9055) support codecov again 2021-05-21 20:20:51 +02:00
dr. M.S. (Matthijs) Berends fecc5d183c (v1.6.0.9054) unit tests 2021-05-20 15:06:08 +02:00
dr. M.S. (Matthijs) Berends 69a656abc0 (v1.6.0.9053) unit tests 2021-05-20 13:42:17 +02:00
dr. M.S. (Matthijs) Berends 4a2a48b7c1 (v1.6.0.9052) unit tests 2021-05-20 11:42:39 +02:00
dr. M.S. (Matthijs) Berends 04ef5b28e7 (v1.6.0.9050) printing NA in custom_eucast_rules() 2021-05-20 10:10:40 +02:00
dr. M.S. (Matthijs) Berends 9a2879cba9 (v1.6.0.9049) unit tests 2021-05-20 00:07:27 +02:00
dr. M.S. (Matthijs) Berends 2413efd5c1 (v1.6.0.9048) ab selectors overhaul 2021-05-19 22:55:42 +02:00
dr. M.S. (Matthijs) Berends 6920c0be41 (v1.6.0.9047) filter_ab_class() fixes 2021-05-18 11:29:31 +02:00
dr. M.S. (Matthijs) Berends cfb7df823e (v1.6.0.9044) betalactams() selector 2021-05-18 00:53:04 +02:00
dr. M.S. (Matthijs) Berends be49131ed7 (v1.6.0.9043) translation update 2021-05-17 19:43:01 +02:00
dr. M.S. (Matthijs) Berends 83fec69a03 (v1.6.0.9042) translation update 2021-05-17 11:26:12 +02:00
dr. M.S. (Matthijs) Berends 916df6e90c (v1.6.0.9041) filter_ab_class() fix 2021-05-16 10:50:00 +02:00
dr. M.S. (Matthijs) Berends 00496e45b7 (v1.6.0.9040) unit tests 2021-05-16 09:25:36 +02:00
dr. M.S. (Matthijs) Berends 229e1bb407 (v1.6.0.9035) unit tests 2021-05-15 22:55:12 +02:00
dr. M.S. (Matthijs) Berends 86736ab9a7 (v1.6.0.9032) unit tests 2021-05-15 21:54:56 +02:00
dr. M.S. (Matthijs) Berends d8c91d5876 (v1.6.0.9031) tinytest unit tests 2021-05-15 21:36:22 +02:00
dr. M.S. (Matthijs) Berends 9a381c8d18 (v1.6.0.9030) new unit test flow 2021-05-13 23:07:31 +02:00
dr. M.S. (Matthijs) Berends 9ed2f6490f (v1.6.0.9028) new unit test flow 2021-05-13 22:44:11 +02:00
dr. M.S. (Matthijs) Berends 5b9fb8daf4 (v1.6.0.9027) new unit test flow 2021-05-13 21:54:15 +02:00
dr. M.S. (Matthijs) Berends b1d942be91 (v1.6.0.9026) new unit test flow 2021-05-13 21:16:22 +02:00
dr. M.S. (Matthijs) Berends 994d157aa6 (v1.6.0.9025) unit test update 2021-05-13 20:53:56 +02:00
dr. M.S. (Matthijs) Berends 9d9d62eba4 (v1.6.0.9024) unit test update 2021-05-13 20:49:47 +02:00
dr. M.S. (Matthijs) Berends aeea00881e (v1.6.0.9023) new unit test flow 2021-05-13 19:31:47 +02:00
dr. M.S. (Matthijs) Berends 655b813e99 (v1.6.0.9022) unit test fix 2021-05-13 15:56:12 +02:00
dr. M.S. (Matthijs) Berends 29dbfa2f49 (v1.6.0.9021) join functions update 2021-05-12 18:15:03 +02:00
dr. M.S. (Matthijs) Berends 3319fbae58 (v1.6.0.9020) fix for skimr in dplyr 1.0.6 2021-05-06 15:17:11 +02:00
dr. M.S. (Matthijs) Berends 5899678b74 (v1.6.0.9019) website fix 2021-05-05 15:47:39 +02:00
dr. M.S. (Matthijs) Berends 0aca719929 (v1.6.0.9018) unit tests 2021-05-04 15:20:43 +02:00
dr. M.S. (Matthijs) Berends 5679ccdaf9 (v1.6.0.9017) extra system codes 2021-05-04 12:47:33 +02:00
dr. M.S. (Matthijs) Berends f33e61bac7 (v1.6.0.9016) website update and c() fixes 2021-05-03 13:06:43 +02:00
dr. M.S. (Matthijs) Berends 12a8d59869 (v1.6.0.9015) italicise_taxonomy 2021-05-03 10:47:32 +02:00
dr. M.S. (Matthijs) Berends e405de079c (v1.6.0.9014) as.rsi() for numeric values 2021-04-30 13:18:48 +02:00
dr. M.S. (Matthijs) Berends a9fd4aa49f (v1.6.0.9013) website update 2021-04-29 17:16:30 +02:00
dr. M.S. (Matthijs) Berends 5e06b20d43 (v1.6.0.9012) unit tests 2021-04-27 11:28:17 +02:00
dr. M.S. (Matthijs) Berends c5fff1c95c (v1.6.0.9011) unit tests 2021-04-27 10:27:13 +02:00
dr. M.S. (Matthijs) Berends 93683a4ae2 (v1.6.0.9010) big first_isolate() update 2021-04-26 23:57:37 +02:00
dr. M.S. (Matthijs) Berends 5f9e7bd3ee (v1.6.0.9009) key_antibiotics update 2021-04-23 16:13:26 +02:00
dr. M.S. (Matthijs) Berends 70b803dbb6 (v1.6.0.9008) unlike, bugfix for col_mo naming 2021-04-23 09:59:36 +02:00
dr. M.S. (Matthijs) Berends c6289c3fc3 (v1.6.0.9007) documentation custom eucast rules, progress bar as.mo 2021-04-20 10:46:17 +02:00
dr. M.S. (Matthijs) Berends de66eccf43 (v1.6.0.9006) eucast rules fix for Ochrobactrum anthropi 2021-04-16 14:59:57 +02:00
dr. M.S. (Matthijs) Berends 24ac18a99d (v1.6.0.9005) unit test fix 2021-04-16 13:24:59 +02:00
dr. M.S. (Matthijs) Berends 9842ef9660 (v1.6.0.9004) unit test fix 2021-04-16 12:02:57 +02:00
dr. M.S. (Matthijs) Berends 00d3e437a8 (v1.6.0.9003) like() fix 2021-04-16 11:41:05 +02:00
dr. M.S. (Matthijs) Berends d277d58475 (v1.6.0.9002) R-3.0 installation fix 2021-04-12 14:24:40 +02:00
dr. M.S. (Matthijs) Berends 6ff5448192 (v1.6.0.9001) support Inf for episodes 2021-04-12 12:35:13 +02:00
dr. M.S. (Matthijs) Berends 7a3139f7cc (v1.6.0.9000) custom EUCAST rules 2021-04-07 08:37:42 +02:00
dr. M.S. (Matthijs) Berends 551f99dc8f v1.6.0 2021-03-15 07:23:21 +01:00
dr. M.S. (Matthijs) Berends 4e0a9533ad (v1.5.0.9041) SNOMED update 2021-03-11 21:42:30 +01:00
dr. M.S. (Matthijs) Berends 8d6ceb6a15 (v1.5.0.9040) removal of isolate_identifier 2021-03-08 09:44:17 +01:00
dr. M.S. (Matthijs) Berends a7c9b4c295 (v1.5.0.9039) handle first isolates for missing antibiograms 2021-03-08 02:38:32 +01:00
dr. M.S. (Matthijs) Berends 450bbe5fb7 (v1.5.0.9034) unit test fix 2021-03-07 21:16:45 +01:00
dr. M.S. (Matthijs) Berends 1bbf409fe5 (v1.5.0.9033) as.rsi fix 2021-03-07 16:15:43 +01:00
dr. M.S. (Matthijs) Berends 850c123de7 (v1.5.0.9032) All group generics for MICs 2021-03-07 13:52:39 +01:00
dr. M.S. (Matthijs) Berends 91dd755cac (v1.5.0.9031) math processing of MICs 2021-03-05 15:36:39 +01:00
dr. M.S. (Matthijs) Berends 0d29bde693 (v1.5.0.9030) as.ab() speed improvement 2021-03-05 10:32:09 +01:00
dr. M.S. (Matthijs) Berends 0e0e3c4ffa (v1.5.0.9029) added missing families and orders 2021-03-05 01:31:46 +01:00
dr. M.S. (Matthijs) Berends ddf88345f1 (v1.5.0.9028) Updated taxonomy until March 2021 2021-03-04 23:28:32 +01:00
dr. M.S. (Matthijs) Berends 41f94cde97 (v1.5.0.9027) website update 2021-02-26 12:11:29 +01:00
dr. M.S. (Matthijs) Berends 1737d56ae4 (v1.5.0.9026) vignette update, support for GISA 2021-02-25 12:31:12 +01:00
dr. M.S. (Matthijs) Berends a673407904 (v1.5.0.9025) big plot and ggplot generics update 2021-02-25 10:33:08 +01:00
dr. M.S. (Matthijs) Berends 31ceba5441 (v1.5.0.9024) more speed improvements 2021-02-22 20:21:33 +01:00
dr. M.S. (Matthijs) Berends 0fdabff1ba (v1.5.0.9023) mo properties speed improvement 2021-02-21 23:19:40 +01:00
dr. M.S. (Matthijs) Berends 062c49fca1 (v1.5.0.9022) mo properties speed improvement 2021-02-21 22:56:35 +01:00
dr. M.S. (Matthijs) Berends 5ef8cb41a7 (v1.5.0.9021) improve speed of %like% 2021-02-21 20:15:09 +01:00
dr. M.S. (Matthijs) Berends daa12ced2c (v1.5.0.9020) translation fix 2021-02-18 23:23:14 +01:00
dr. M.S. (Matthijs) Berends 601ea7377c (v1.5.0.9019) use functions without loading AMR pkg 2021-02-17 10:58:13 +01:00
dr. M.S. (Matthijs) Berends 2dd0656355 (v1.5.0.9018) fix unit tests 2021-02-09 12:28:15 +01:00
dr. M.S. (Matthijs) Berends cb404492b2 (v1.5.0.9017) unit testing 2021-02-08 21:09:36 +01:00
dr. M.S. (Matthijs) Berends 4a84894f79 (v1.5.0.9016) only_rsi_columns update, documentation 2021-02-08 14:18:42 +01:00
dr. M.S. (Matthijs) Berends 8fda473e49 (v1.5.0.9015) unit test fix, grouped first isolates 2021-02-04 16:48:16 +01:00
dr. M.S. (Matthijs) Berends 2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
dr. M.S. (Matthijs) Berends 20d638c193 (v1.5.0.9013) updated tibble printing colours 2021-01-28 16:09:30 +01:00
dr. M.S. (Matthijs) Berends 331c1f6508 (v1.5.0.9012) ampc_cephalosporin_resistance for I 2021-01-25 21:58:00 +01:00
dr. M.S. (Matthijs) Berends 24eb4453db (v1.5.0.9011) small dosage update 2021-01-24 23:27:11 +01:00
dr. M.S. (Matthijs) Berends 286eaa9699 (v1.5.0.9010) MDRO vignette update, get_episode for < day 2021-01-24 14:48:56 +01:00
dr. M.S. (Matthijs) Berends 1a88caa119 (v1.5.0.9009) unit test fixes 2021-01-22 10:55:07 +01:00
dr. M.S. (Matthijs) Berends 1ba44776a1 (v1.5.0.9008) Internal data sets to pkg, speed for auto col determination 2021-01-22 10:20:41 +01:00
dr. M.S. (Matthijs) Berends 27f084d819 (v1.5.0.9007) updated unit tests 2021-01-18 18:45:43 +01:00
dr. M.S. (Matthijs) Berends 4eab095306 (v1.5.0.9006) major documentation update 2021-01-18 16:57:56 +01:00
dr. M.S. (Matthijs) Berends e95218c0d1 (v1.5.0.9005) custom MDRO guideline 2021-01-17 10:35:21 +01:00
dr. M.S. (Matthijs) Berends e699de955c (v1.5.0.9004) custom MDRO guideline 2021-01-17 00:26:48 +01:00
dr. M.S. (Matthijs) Berends 7ebc534ccd (v1.5.0.9003) verbose output of mdro() 2021-01-15 22:44:52 +01:00
dr. M.S. (Matthijs) Berends 6745f3fb17 (v1.5.0.9002) doc update 2021-01-14 15:51:41 +01:00
dr. M.S. (Matthijs) Berends bc00470dca (v1.5.0.9001) more informative argument errors 2021-01-14 14:41:44 +01:00
dr. M.S. (Matthijs) Berends d014955ce0 (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
dr. M.S. (Matthijs) Berends 3b84b8be75 v1.5.0 2021-01-06 11:16:17 +01:00
dr. M.S. (Matthijs) Berends 1563dcd1aa (v1.4.0.9062) unit test fix 2021-01-04 14:46:17 +01:00
dr. M.S. (Matthijs) Berends a7ea4c9d2f (v1.4.0.9061) ab class selector fix 2021-01-04 14:16:09 +01:00
dr. M.S. (Matthijs) Berends 8d117820b8 (v1.4.0.9060) ab class selector fix 2021-01-04 13:39:06 +01:00
dr. M.S. (Matthijs) Berends c9de74c81a (v1.4.0.9059) ab class selector fix 2021-01-04 12:29:25 +01:00
dr. M.S. (Matthijs) Berends 82cfa24ea4 (v1.4.0.9058) GH actions update 2021-01-04 11:27:37 +01:00
dr. M.S. (Matthijs) Berends daac96fefe (v1.4.0.9057) GH actions update 2021-01-04 09:49:42 +01:00
dr. M.S. (Matthijs) Berends 63a4dda467 (v1.4.0.9056) subsetting ab class selectors for base R 2021-01-03 23:40:05 +01:00
dr. M.S. (Matthijs) Berends ecac443f86 (v1.4.0.9055) more unit tests 2020-12-31 13:44:58 +01:00
dr. M.S. (Matthijs) Berends 10dec96058 (v1.4.0.9054) unit test update 2020-12-29 22:06:01 +01:00
dr. M.S. (Matthijs) Berends d3f007bf65 (v1.4.0.9053) unit test old R versions 2020-12-29 21:23:01 +01:00
dr. M.S. (Matthijs) Berends 526f8afb08 (v1.4.0.9052) replaced all sapply's with type-safe vapply's 2020-12-28 22:24:33 +01:00
dr. M.S. (Matthijs) Berends ccf13dd6c0 (v1.4.0.9051) ab class 2020-12-27 23:19:41 +01:00
dr. M.S. (Matthijs) Berends afc325c314 (v1.4.0.9050) ab selectors base R 2020-12-27 20:32:40 +01:00
dr. M.S. (Matthijs) Berends 175e33abba (v1.4.0.9049) unit tests 2020-12-27 15:07:01 +01:00