dr. M.S. (Matthijs) Berends
9c566585b0
first inclusion of ITIS data
2018-09-24 23:33:29 +02:00
dr. M.S. (Matthijs) Berends
5d80cef338
added taxonomic data from ITIS
2018-09-17 20:53:32 +02:00
dr. M.S. (Matthijs) Berends
db14781593
add labels_rsi_count
2018-09-16 22:11:17 +02:00
dr. M.S. (Matthijs) Berends
b792a2754e
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
2018-09-16 16:43:29 +02:00
dr. M.S. (Matthijs) Berends
e39a9a8b05
added mo_shortname
2018-09-05 10:51:46 +02:00
dr. M.S. (Matthijs) Berends
b388e3fee7
Support for German and Spanish microorganism properties, cleanup
2018-09-04 11:33:30 +02:00
dr. M.S. (Matthijs) Berends
5965d3c794
replaced bactid by mo
2018-08-31 13:36:19 +02:00
dr. M.S. (Matthijs) Berends
029157b3be
163 new trade names, added ab_tradenames
2018-08-29 12:27:37 +02:00
dr. M.S. (Matthijs) Berends
972fc4f6c7
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
2018-08-28 13:51:13 +02:00
dr. M.S. (Matthijs) Berends
2acdb1981c
atc and bactid functions, readme update
2018-08-25 22:01:14 +02:00
dr. M.S. (Matthijs) Berends
a100d07da6
removed ratio, better rsi_calc, update for freq
2018-08-24 11:08:20 +02:00
dr. M.S. (Matthijs) Berends
da5379c881
quasiquotation, alpha for geom_rsi
2018-08-23 00:40:36 +02:00
dr. M.S. (Matthijs) Berends
3e87c8f409
count_* functions
2018-08-22 00:02:26 +02:00
dr. M.S. (Matthijs) Berends
ce2cdb9309
support groups for portion_df, update README
2018-08-12 22:34:03 +02:00
dr. M.S. (Matthijs) Berends
1ba7d883fe
new ggplot enhancement
2018-08-11 21:30:00 +02:00
dr. M.S. (Matthijs) Berends
53fa198e35
new portion functions
2018-08-10 15:01:05 +02:00
dr. M.S. (Matthijs) Berends
ae2433a020
rsi family for resistance analysis
2018-08-03 14:49:29 +02:00
dr. M.S. (Matthijs) Berends
826694323b
new functions R, RI, SI, S
2018-07-29 22:14:51 +02:00
dr. M.S. (Matthijs) Berends
feab1cad6b
small fixes
2018-07-28 09:34:03 +02:00
dr. M.S. (Matthijs) Berends
498e88b5cf
improvement for forecasting resistance
2018-07-26 16:30:42 +02:00
dr. M.S. (Matthijs) Berends
d9e204031d
update to septic_patients, speed improvements
2018-07-25 14:17:04 +02:00
dr. M.S. (Matthijs) Berends
8421638b60
new class bactid
2018-07-23 14:14:03 +02:00
dr. M.S. (Matthijs) Berends
5cb9c541f8
new algorithm key abs
2018-07-17 13:02:05 +02:00
dr. M.S. (Matthijs) Berends
a5a4354651
speed improvements
2018-07-17 10:32:26 +02:00
dr. M.S. (Matthijs) Berends
715a7630ca
support format.freq
2018-07-16 16:41:48 +02:00
dr. M.S. (Matthijs) Berends
b6655f6454
Welcome C++!
2018-07-13 17:23:46 +02:00
dr. M.S. (Matthijs) Berends
a28289562a
remove print function, out of scope
2018-07-11 20:12:19 +02:00
dr. M.S. (Matthijs) Berends
f63414d519
new g.test, extra unit tests
2018-07-10 12:27:07 +02:00
dr. M.S. (Matthijs) Berends
fc30d3fb13
freq: support for table
2018-07-09 14:02:58 +02:00
dr. M.S. (Matthijs) Berends
14b990d769
kurtosis, skewness, start with ML
2018-07-08 22:14:55 +02:00
dr. M.S. (Matthijs) Berends
34ee0247ac
addins and small improvements to microorganisms dataset
2018-07-04 17:20:03 +02:00
dr. M.S. (Matthijs) Berends
10fce8382c
include IQR and MAD in freq
2018-07-03 11:30:40 +02:00
dr. M.S. (Matthijs) Berends
3d0d21f322
rename vector2ratio to ratio
2018-07-02 11:14:20 +02:00
dr. M.S. (Matthijs) Berends
2c8d4cb8bf
forgot namespace...
2018-07-01 22:37:47 +02:00
dr. M.S. (Matthijs) Berends
3527894b49
new g.test() and edited freq()
2018-07-01 21:40:37 +02:00
dr. M.S. (Matthijs) Berends
649a8025aa
add clipboard functions again
2018-06-27 15:54:56 +02:00
dr. M.S. (Matthijs) Berends
a9bd5472d0
top_freq
2018-06-20 14:47:37 +02:00
dr. M.S. (Matthijs) Berends
bdc860e29c
atc_groups
2018-06-19 10:05:38 +02:00
dcc26dd942
Update freq function
2018-05-22 16:34:22 +02:00
dr. M.S. (Matthijs) Berends
c0fc82c794
Added function `n_rsi`
2018-05-02 14:56:25 +02:00
dr. M.S. (Matthijs) Berends
19ccc51f40
remove clipboard functions
2018-05-01 09:36:45 +02:00
dr. M.S. (Matthijs) Berends
970e3ed7f1
EUCAST rules for MDRO
2018-04-25 15:33:58 +02:00
dr. M.S. (Matthijs) Berends
a814d82b4b
try to support older R versions
2018-04-18 14:50:16 +02:00
dr. M.S. (Matthijs) Berends
2509e2413d
MDRO, freq tables, new print format for tibbles
2018-04-18 12:24:54 +02:00
39eb307968
Remove Windows only function
2018-03-23 14:58:46 +01:00
dr. M.S. (Matthijs) Berends
53464ff1c8
- For functions `first_isolate`, `EUCAST_rules` the antibiotic column names are case-insensitive
...
- Functions `first_isolate`, `EUCAST_rules` and `rsi_predict` supports tidyverse-like evaluation of parameters (no need to quote columns them anymore)
- Functions `clipboard_import` and `clipboard_export` as helper functions to quickly copy and paste from/to software like Excel and SPSS
- Renamed dataset `bactlist` to `microorganisms`
2018-03-23 14:46:02 +01:00
dr. M.S. (Matthijs) Berends
dd2517ecb7
- Added new algorithm to determine weighted isolates, can now be `points` or `keyantibiotics, see `?first_isolate`
...
- Function `first_isolate` supports tidyverse-like evaluation of parameters (no need to quote them anymore)
- Functions `as.rsi` and `as.mic` now add the package name and version as attribute
2018-03-19 20:39:23 +01:00
dr. M.S. (Matthijs) Berends
502a44eb25
- Added new function `guess_bactid` to determine the ID of a microorganism based on genus/species
...
- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
2018-03-19 12:43:22 +01:00
dr. M.S. (Matthijs) Berends
46db3f7b13
import from graphics
2018-03-13 15:40:10 +01:00
dr. M.S. (Matthijs) Berends
04fc3573ec
add barplots
2018-03-13 14:34:10 +01:00
dr. M.S. (Matthijs) Berends
d36a391747
export first_isolate
2018-02-26 12:15:52 +01:00
dr. M.S. (Matthijs) Berends
d8da8daf9a
First CRAN submission edits
2018-02-22 20:48:48 +01:00
dr. M.S. (Matthijs) Berends
ab0503f8b8
abname, logo
2018-02-21 12:10:00 +01:00
dr. M.S. (Matthijs) Berends
62304dc23f
first commit
2018-02-21 11:52:31 +01:00
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MS Berends