 dr. M.S. (Matthijs) Berends
|
acb534102b
|
new species groups, updated clinical breakpoints
|
2023-07-08 17:30:05 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2d97cca6d9
|
fix `reference_df` endless loop
|
2023-06-26 13:52:02 +02:00 |
Dr. Matthijs Berends
|
f065945d7b
|
Update clinical breakpoints and fix some `as.mo()` bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
|
2023-06-22 15:10:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9591688811
|
documentation update
|
2023-05-27 10:39:22 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e1966503ee
|
unit testing R4.3
|
2023-05-26 20:37:00 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
766db4e21f
|
as.mo fix
|
2023-05-26 19:20:21 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c6135d2082
|
updated microorganism codes
|
2023-05-26 16:10:01 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
0bcf55d3b6
|
improve `as.mo()`
|
2023-05-24 15:55:53 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
91fa73dedf
|
add oxygen tolerance
|
2023-05-11 21:56:27 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
bf08d136a0
|
fix coercing `NA` to custom codes, fixes #107
|
2023-05-08 13:04:18 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9148a2dcf4
|
fix `mo_rank()` for 'unknown' MOs
|
2023-04-20 15:20:41 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
02322ac2ee
|
Fix PK/PD breakpoints
|
2023-04-19 00:31:31 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ed70f95380
|
Fix clinical breakpoints
|
2023-04-14 23:14:34 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
147f9112e9
|
Fix some WHONET codes
|
2023-04-14 11:12:26 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
549790c2a6
|
website
|
2023-03-20 21:59:50 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c28cfa3a77
|
fix documentation
|
2023-03-16 08:55:37 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
dd7cc86485
|
help page %like%
|
2023-03-14 19:49:50 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
80cfc503c2
|
check for 2.0
|
2023-03-12 13:02:37 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
7ad8635994
|
documentation for 'data.table' AB selectors
|
2023-03-11 16:54:02 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
45e840c02f
|
update NEWS
|
2023-03-11 14:43:31 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
262598b8d7
|
support for old rsi arguments
|
2023-03-11 14:24:34 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
1d3d7d40bc
|
get episode unit tests
|
2023-02-24 19:54:56 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2c5a9bb622
|
new relative episode determination in `get_episode()`, fix for plotting disk/MIC values
|
2023-02-24 17:06:30 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
92029c9e95
|
remove note
|
2023-02-24 10:31:36 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
049baf0a71
|
fix for antibiograms on R < 3.5
|
2023-02-24 09:43:10 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e70f2cd32c
|
knitr format
|
2023-02-23 16:27:40 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
a84101db08
|
N for only 1 AB in
|
2023-02-22 16:26:13 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c2cfc5ef84
|
fix for `antibiogram()`, transform `WHONET` data set to `sir`
|
2023-02-22 15:40:05 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
dad25302f2
|
make `rsi` work in more cases, documentation update
|
2023-02-22 14:38:57 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e890360986
|
website syntax update
|
2023-02-17 11:39:00 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
714a048fa9
|
italicise antibiogram
|
2023-02-17 09:42:51 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
ef716f6ee3
|
doc fix
|
2023-02-15 17:16:40 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
3396236eef
|
unit test fixes
|
2023-02-13 16:56:25 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
b6d2b1398d
|
Fix for `antibiogram()` in R <=3.4
|
2023-02-13 10:21:43 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
45a9697c84
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
68abb00c59
|
add include_screening to `as.sir()`
|
2023-02-12 15:09:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
b146de6d7f
|
fix for bind_rows2, added 4 langs
|
2023-02-11 21:57:12 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
03294c7901
|
fix for Salmonella group A, unit tests
|
2023-02-10 16:47:25 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
bc434db835
|
bring back `antibiogram()`, without deps
|
2023-02-10 16:18:00 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
70a7ba0206
|
fix first isolate
|
2023-02-10 13:13:17 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
1a0dc4bf46
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
aa48c6bf53
|
pm fixes
|
2023-02-08 16:51:41 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
f7dd890b79
|
fixes
|
2023-02-06 12:38:52 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
9e99e66f01
|
use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi
|
2023-02-06 11:57:22 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
4b133d4c96
|
unit tests
|
2023-01-30 17:24:03 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
830c67f1bf
|
documentation, unit tests
|
2023-01-24 10:20:27 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
eef00069fd
|
add all options to documentation
|
2023-01-23 20:07:57 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
19fd0ef121
|
sort sir history
|
2023-01-23 15:01:21 +01:00 |
|
Dr. Matthijs Berends
|
98e62c9af2
|
Replace RSI with SIR
|
2023-01-21 23:47:20 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
593d740b84
|
documentation, file permissions
|
2023-01-19 12:54:53 +01:00 |