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Commit Graph

436 Commits

Author SHA1 Message Date
00d3e437a8 (v1.6.0.9003) like() fix 2021-04-16 11:41:05 +02:00
7a3139f7cc (v1.6.0.9000) custom EUCAST rules 2021-04-07 08:37:42 +02:00
551f99dc8f v1.6.0 2021-03-15 07:23:21 +01:00
4e0a9533ad (v1.5.0.9041) SNOMED update 2021-03-11 21:42:30 +01:00
8d6ceb6a15 (v1.5.0.9040) removal of isolate_identifier 2021-03-08 09:44:17 +01:00
a7c9b4c295 (v1.5.0.9039) handle first isolates for missing antibiograms 2021-03-08 02:38:32 +01:00
a12975bc6e (v1.5.0.9037) quick test 2021-03-08 00:13:13 +01:00
68163e3089 (v1.5.0.9036) quick test 2021-03-07 22:45:05 +01:00
850c123de7 (v1.5.0.9032) All group generics for MICs 2021-03-07 13:52:39 +01:00
0d29bde693 (v1.5.0.9030) as.ab() speed improvement 2021-03-05 10:32:09 +01:00
ddf88345f1 (v1.5.0.9028) Updated taxonomy until March 2021 2021-03-04 23:28:32 +01:00
41f94cde97 (v1.5.0.9027) website update 2021-02-26 12:11:29 +01:00
a673407904 (v1.5.0.9025) big plot and ggplot generics update 2021-02-25 10:33:08 +01:00
062c49fca1 (v1.5.0.9022) mo properties speed improvement 2021-02-21 22:56:35 +01:00
daa12ced2c (v1.5.0.9020) translation fix 2021-02-18 23:23:14 +01:00
cb404492b2 (v1.5.0.9017) unit testing 2021-02-08 21:09:36 +01:00
4a84894f79 (v1.5.0.9016) only_rsi_columns update, documentation 2021-02-08 14:18:42 +01:00
8fda473e49 (v1.5.0.9015) unit test fix, grouped first isolates 2021-02-04 16:48:16 +01:00
2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
1a88caa119 (v1.5.0.9009) unit test fixes 2021-01-22 10:55:07 +01:00
1ba44776a1 (v1.5.0.9008) Internal data sets to pkg, speed for auto col determination 2021-01-22 10:20:41 +01:00
27f084d819 (v1.5.0.9007) updated unit tests 2021-01-18 18:45:43 +01:00
4eab095306 (v1.5.0.9006) major documentation update 2021-01-18 16:57:56 +01:00
e699de955c (v1.5.0.9004) custom MDRO guideline 2021-01-17 00:26:48 +01:00
bc00470dca (v1.5.0.9001) more informative argument errors 2021-01-14 14:41:44 +01:00
d014955ce0 (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
1563dcd1aa (v1.4.0.9062) unit test fix 2021-01-04 14:46:17 +01:00
a7ea4c9d2f (v1.4.0.9061) ab class selector fix 2021-01-04 14:16:09 +01:00
8d117820b8 (v1.4.0.9060) ab class selector fix 2021-01-04 13:39:06 +01:00
63a4dda467 (v1.4.0.9056) subsetting ab class selectors for base R 2021-01-03 23:40:05 +01:00
d3f007bf65 (v1.4.0.9053) unit test old R versions 2020-12-29 21:23:01 +01:00
afc325c314 (v1.4.0.9050) ab selectors base R 2020-12-27 20:32:40 +01:00
175e33abba (v1.4.0.9049) unit tests 2020-12-27 15:07:01 +01:00
ed198916bf (v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants 2020-12-27 14:23:11 +01:00
8b52f9b1be (v1.4.0.9047) unit tests 2020-12-27 00:30:28 +01:00
acbd0cf7ca (v1.4.0.9046) get_episode 2020-12-27 00:07:00 +01:00
291f802be3 (v1.4.0.9045) unit tests 2020-12-25 00:06:11 +01:00
128ebcfd62 (v1.4.0.9043) documentation update 2020-12-22 00:51:17 +01:00
81af41da3a (v1.4.0.9041) updates based on review 2020-12-17 16:22:25 +01:00
203bc20eb0 (v1.4.0.9039) more unit tests 2020-12-13 20:44:32 +01:00
ac22b8d5c1 (v1.4.0.9038) docu update 2020-12-13 13:44:04 +01:00
c8bcecf232 (v1.4.0.9037) random_* functions 2020-12-12 23:17:29 +01:00
2edd3339db (v1.4.0.9036) more unit tests 2020-12-11 12:17:23 +01:00
e03b3c96d3 (v1.4.0.9030) as.mo() fix for known lab codes 2020-12-03 16:59:04 +01:00
b045b571a6 (v1.4.0.9025) is_new_episode() 2020-11-23 21:50:27 +01:00
363218da7e (v1.4.0.9024) is_new_episode() 2020-11-17 16:57:41 +01:00
05fb213a7c (v1.4.0.9020) mo_is_intrinsic_resistant 2020-11-16 11:03:24 +01:00
01d9522434 (v1.4.0.9017) stringsAsFactors definitions 2020-11-11 16:49:27 +01:00
68ac39aa7f (v1.4.0.9016) as.rsi() older R versions 2020-11-10 19:59:14 +01:00
15c732703d (v1.4.0.9015) bugfix 2020-11-10 16:35:56 +01:00
d3b1d33210 (v1.4.0.9013) is_gram_negative/positive update 2020-11-09 13:07:02 +01:00
760d69a3e0 (v1.4.0.9008) like variations 2020-10-26 12:23:03 +01:00
4e9ccb4435 (v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening 2020-10-19 17:09:19 +02:00
28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00
c04dc852cf (v1.3.0.9039) lifecycle updates, added excess kurtosis 2020-10-04 21:02:16 +02:00
ac1c78c793 (v1.3.0.9036) documentation fix 2020-09-30 10:24:53 +02:00
4e0374af29 (v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup 2020-09-29 23:35:46 +02:00
68e6e1e329 (v1.3.0.9034) eucast_rules summary fix 2020-09-29 10:40:25 +02:00
36ec8b0d81 (v1.3.0.9033) skimr fix 2020-09-28 11:00:59 +02:00
519aada54f (v1.3.0.9032) support skimr 2020-09-28 01:08:55 +02:00
050a9a04fb (v1.3.0.9030) matching score update 2020-09-26 16:26:01 +02:00
9667c2994f (v1.3.0.9029) eucast rules fix, unique() 2020-09-25 14:44:50 +02:00
027215ed94 (v1.3.0.9027) unit tests 2020-09-24 00:50:23 +02:00
c19095a3d5 (v1.3.0.9026) eucast expert rules 3.2 2020-09-24 00:30:11 +02:00
a1411ddafc (v1.3.0.9025) optimalisation 2020-09-19 15:15:57 +02:00
2f0186ace2 (v1.3.0.9024) optimalisation 2020-09-19 12:57:51 +02:00
d049cce69b (v1.3.0.9023) optimalisation 2020-09-19 11:54:01 +02:00
4e40e42011 (v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix 2020-09-18 16:05:53 +02:00
ab60f613aa (v1.3.0.9020) fix for uncertainty in as.mo() 2020-09-14 19:41:48 +02:00
0f6760d427 (v1.3.0.9017) small fix 2020-09-12 13:54:21 +02:00
3ff871afeb (v1.3.0.9016) mo_uncertainties() overhaul 2020-09-12 08:49:01 +02:00
c4b87fe241 (v1.3.0.9014) as.mo() speed improvement 2020-09-03 12:31:48 +02:00
74a172ef55 (v1.3.0.9010) S3 extensions without dependencies 2020-08-28 21:55:47 +02:00
9b8db57c65 (v1.3.0.9008) also tibble printing for ab 2020-08-26 15:34:12 +02:00
0d9602a6a9 (v1.3.0.9000) support across() in as.rsi() 2020-08-10 11:44:58 +02:00
c5f7294381 (v1.3.0) skip more CRAN tests 2020-07-31 10:50:08 +02:00
c8edcb7439 (v1.3.0) small fixes 2020-07-30 15:15:52 +02:00
1b65d76cfb (v1.2.0.9037) survey on website 2020-07-28 18:39:57 +02:00
ab2b359e6b (v1.2.0.9036) unit test fix 2020-07-22 12:29:51 +02:00
09fba38ea6 (v1.2.0.9035) as.mo() speed improvement 2020-07-22 10:24:23 +02:00
76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
152ac5bcad (v1.2.0.9023) ab_from_text() improvement 2020-07-02 21:12:52 +02:00
298e67a45b (v1.2.0.9022) as.ab() improvement 2020-07-01 16:21:36 +02:00
329a0eb0b6 (v1.2.0.9019) ab_from_text() dose and administration 2020-07-01 11:07:01 +02:00
4f6f056077 (v1.2.0.9017) ab_from_text() improvement 2020-06-26 12:31:27 +02:00
344bbd57f4 (v1.2.0.9014) ab_from_text() 2020-06-25 17:34:50 +02:00
8a66e475d7 (v1.2.0.9013) unit test fix 2020-06-22 13:18:40 +02:00
779a4e8348 (v1.2.0.9012) mo_domain(), improved error handling 2020-06-22 12:18:53 +02:00
93a158aebd (v1.2.0.9011) mo_domain(), improved error handling 2020-06-22 11:18:40 +02:00
c4d7412f36 (v1.2.0.9007) Tidyverse selections 2020-06-17 01:39:30 +02:00
5dc4c96b7d (v1.2.0.9001) filter_ab_class() update 2020-06-03 11:48:00 +02:00
d9a4b0bcaf (v1.1.0.9021) 1st isolates update 2020-05-28 10:51:56 +02:00
86d44054f0 (v1.1.0.9020) updated taxonomy 2020-05-27 16:37:49 +02:00
e467cc103e (v1.1.0.9017) as.ab() update, added ab_url() 2020-05-22 20:15:19 +02:00
5216d2b520 (v1.1.0.9014) lose dependencies 2020-05-19 14:16:45 +02:00
cb1814f5ff (v1.1.0.9013) lose dependencies 2020-05-19 13:18:01 +02:00
19703eb5d3 (v1.1.0.9012) lose dependencies 2020-05-19 12:08:49 +02:00
bf0402a653 (v1.1.0.9009) lose dependencies 2020-05-18 10:30:53 +02:00
071bdc5a9e (v1.1.0.9008) lose dependencies 2020-05-17 11:56:12 +02:00
29609a0e2c (v1.1.0.9006) lose dependencies 2020-05-16 20:42:45 +02:00