 dr. M.S. (Matthijs) Berends
|
5f3a7694aa
|
microorganisms update, added Salmonella groups
|
2022-12-16 16:10:43 +01:00 |
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dr. M.S. (Matthijs) Berends
|
31fb81c382
|
revised `as.rsi()`, fix for `mdro()`
|
2022-11-24 20:29:00 +01:00 |
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dr. M.S. (Matthijs) Berends
|
05d536ebb7
|
complexes
|
2022-11-17 15:23:29 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d40e0ef20b
|
completely updated `antibiotics`
|
2022-10-30 14:31:45 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
c2801ba7a1
|
new rsi_translation
|
2022-10-22 22:00:15 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
85e2fbe4a3
|
remove warnings from unit tests
|
2022-10-19 11:47:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f203928f7e
|
coercion fixes
|
2022-10-19 06:59:36 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
76bcd3528c
|
move object assignment to AMR_env
|
2022-10-14 13:02:50 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
43c638d122
|
add `mo_current()`
|
2022-10-10 10:12:08 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b9342d103e
|
fix documentation
|
2022-10-06 11:33:30 +02:00 |
Dr. Matthijs Berends
|
cd2acc4a29
|
New mo algorithm, prepare for 2.0
|
2022-10-05 09:12:22 +02:00 |
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dr. M.S. (Matthijs) Berends
|
71db246d5c
|
unit test fix
|
2022-08-28 19:17:12 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4d050aef7c
|
styled, unit test fix
|
2022-08-28 10:31:50 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
303d61b473
|
new tibble export
|
2022-08-27 20:49:37 +02:00 |
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dr. M.S. (Matthijs) Berends
|
952d16de33
|
new, automated website
|
2022-08-21 16:37:20 +02:00 |
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dr. M.S. (Matthijs) Berends
|
3f2f60ab77
|
language updates
|
2022-08-19 12:33:14 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7f981e7778
|
(v1.8.1.9013) add Toxoplasma
|
2022-06-10 13:15:23 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7b0f1596bd
|
(v1.8.0.9010) as.mo improvement
|
2022-03-15 17:35:02 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
3b2b2be5f8
|
(v1.8.0.9002) as.rsi() cleanup, more informative warnings
|
2022-03-02 15:38:55 +01:00 |
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dr. M.S. (Matthijs) Berends
|
18e8525d10
|
(v1.8.0.9001) as.mo improvement, fixes #52
|
2022-02-26 21:58:23 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
25cef46c59
|
(v1.8.0) prerelease 1.8.0
|
2021-12-23 18:56:28 +01:00 |
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dr. M.S. (Matthijs) Berends
|
d9274bcd0a
|
(v1.7.1.9075) assignment operator
|
2021-12-14 22:59:27 +01:00 |
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dr. M.S. (Matthijs) Berends
|
76dee66852
|
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
|
2021-12-14 22:39:23 +01:00 |
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dr. M.S. (Matthijs) Berends
|
bd4bb1d72f
|
(v1.7.1.9073) as.rsi() fix for UTIs
|
2021-12-14 21:47:14 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
578e7dfee9
|
(v1.7.1.9070) Better WHONET support
|
2021-12-13 10:18:28 +01:00 |
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dr. M.S. (Matthijs) Berends
|
f90e27c1b0
|
(v1.7.1.9069) CLSI 2021 support
|
2021-12-12 11:36:58 +01:00 |
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dr. M.S. (Matthijs) Berends
|
56f1ce328a
|
(v1.7.1.9067) Support for Swedish and Russian
|
2021-12-12 09:42:03 +01:00 |
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dr. M.S. (Matthijs) Berends
|
77ba4318ea
|
(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
|
2021-12-11 13:41:31 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
37e6e35ec4
|
(v1.7.1.9051) updated taxonomy, updated git branch name
|
2021-10-06 13:23:57 +02:00 |
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dr. M.S. (Matthijs) Berends
|
8f5e5a3fc2
|
(v1.7.1.9050) fix for as.mo
|
2021-10-05 14:00:35 +02:00 |
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dr. M.S. (Matthijs) Berends
|
2bcf28281d
|
(v1.7.1.9049) unit tests
|
2021-10-05 09:58:08 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
a2d249962f
|
(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
|
2021-08-16 21:54:34 +02:00 |
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dr. M.S. (Matthijs) Berends
|
b228eb1536
|
(v1.7.1.9016) only_treatable ab selectors
|
2021-07-08 22:23:28 +02:00 |
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dr. M.S. (Matthijs) Berends
|
625a6fb304
|
(v1.7.1.9015) removed S3 taxonomic_name again
|
2021-07-07 20:34:05 +02:00 |
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dr. M.S. (Matthijs) Berends
|
d04e83f494
|
(v1.7.1.9005) ab class selectors for R-3.0 and R-3.1
|
2021-06-22 12:16:42 +02:00 |
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dr. M.S. (Matthijs) Berends
|
c44d9392ca
|
(v1.7.1.9004) more extensive unit tests
|
2021-06-15 10:51:04 +02:00 |
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dr. M.S. (Matthijs) Berends
|
99be4c7e7e
|
(v1.7.1.9002) ab class selectors update
|
2021-06-14 22:04:04 +02:00 |
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dr. M.S. (Matthijs) Berends
|
1908e7cc7a
|
(v1.7.1.9000) ab_class update, unit tests
|
2021-06-04 21:07:55 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
bef0f42f66
|
(v1.7.0.9001) CLSI 2020 guideline
|
2021-06-01 15:33:06 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f406319503
|
(v1.7.0.9000) package size
|
2021-05-30 22:14:38 +02:00 |
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dr. M.S. (Matthijs) Berends
|
be49131ed7
|
(v1.6.0.9043) translation update
|
2021-05-17 19:43:01 +02:00 |
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dr. M.S. (Matthijs) Berends
|
83fec69a03
|
(v1.6.0.9042) translation update
|
2021-05-17 11:26:12 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
29dbfa2f49
|
(v1.6.0.9021) join functions update
|
2021-05-12 18:15:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3319fbae58
|
(v1.6.0.9020) fix for skimr in dplyr 1.0.6
|
2021-05-06 15:17:11 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f33e61bac7
|
(v1.6.0.9016) website update and c() fixes
|
2021-05-03 13:06:43 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
70b803dbb6
|
(v1.6.0.9008) unlike, bugfix for col_mo naming
|
2021-04-23 09:59:36 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c6289c3fc3
|
(v1.6.0.9007) documentation custom eucast rules, progress bar as.mo
|
2021-04-20 10:46:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7a3139f7cc
|
(v1.6.0.9000) custom EUCAST rules
|
2021-04-07 08:37:42 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4e0a9533ad
|
(v1.5.0.9041) SNOMED update
|
2021-03-11 21:42:30 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
91dd755cac
|
(v1.5.0.9031) math processing of MICs
|
2021-03-05 15:36:39 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
ddf88345f1
|
(v1.5.0.9028) Updated taxonomy until March 2021
|
2021-03-04 23:28:32 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
1737d56ae4
|
(v1.5.0.9026) vignette update, support for GISA
|
2021-02-25 12:31:12 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
31ceba5441
|
(v1.5.0.9024) more speed improvements
|
2021-02-22 20:21:33 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
0fdabff1ba
|
(v1.5.0.9023) mo properties speed improvement
|
2021-02-21 23:19:40 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
062c49fca1
|
(v1.5.0.9022) mo properties speed improvement
|
2021-02-21 22:56:35 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5ef8cb41a7
|
(v1.5.0.9021) improve speed of %like%
|
2021-02-21 20:15:09 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
daa12ced2c
|
(v1.5.0.9020) translation fix
|
2021-02-18 23:23:14 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
601ea7377c
|
(v1.5.0.9019) use functions without loading AMR pkg
|
2021-02-17 10:58:13 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
8fda473e49
|
(v1.5.0.9015) unit test fix, grouped first isolates
|
2021-02-04 16:48:16 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2eca8c3f01
|
(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
|
2021-02-02 23:57:35 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
20d638c193
|
(v1.5.0.9013) updated tibble printing colours
|
2021-01-28 16:09:30 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
331c1f6508
|
(v1.5.0.9012) ampc_cephalosporin_resistance for I
|
2021-01-25 21:58:00 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
286eaa9699
|
(v1.5.0.9010) MDRO vignette update, get_episode for < day
|
2021-01-24 14:48:56 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
4eab095306
|
(v1.5.0.9006) major documentation update
|
2021-01-18 16:57:56 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d014955ce0
|
(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
|
2021-01-12 22:08:04 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
3b84b8be75
|
v1.5.0
|
2021-01-06 11:16:17 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d3f007bf65
|
(v1.4.0.9053) unit test old R versions
|
2020-12-29 21:23:01 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
afc325c314
|
(v1.4.0.9050) ab selectors base R
|
2020-12-27 20:32:40 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
8b52f9b1be
|
(v1.4.0.9047) unit tests
|
2020-12-27 00:30:28 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
acbd0cf7ca
|
(v1.4.0.9046) get_episode
|
2020-12-27 00:07:00 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
df37584189
|
(v1.4.0.9044) mo tibble printing, mo_shortname() fix
|
2020-12-24 23:29:10 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
128ebcfd62
|
(v1.4.0.9043) documentation update
|
2020-12-22 00:51:17 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
81af41da3a
|
(v1.4.0.9041) updates based on review
|
2020-12-17 16:22:25 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
1faa816090
|
(v1.4.0.9040) LA-MRSA / CA-MRSA
|
2020-12-16 16:18:53 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2edd3339db
|
(v1.4.0.9036) more unit tests
|
2020-12-11 12:17:23 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
e03b3c96d3
|
(v1.4.0.9030) as.mo() fix for known lab codes
|
2020-12-03 16:59:04 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
deefce9520
|
(v1.4.0.9021) more robust class setting
|
2020-11-16 16:57:55 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
05fb213a7c
|
(v1.4.0.9020) mo_is_intrinsic_resistant
|
2020-11-16 11:03:24 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
01d9522434
|
(v1.4.0.9017) stringsAsFactors definitions
|
2020-11-11 16:49:27 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
15c732703d
|
(v1.4.0.9015) bugfix
|
2020-11-10 16:35:56 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
dd5a0319ef
|
(v1.4.0.9014) bugfix
|
2020-11-09 15:18:36 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d3b1d33210
|
(v1.4.0.9013) is_gram_negative/positive update
|
2020-11-09 13:07:02 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
423879c034
|
(v1.4.0.9012) reference_df fix
|
2020-11-05 01:11:49 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
5a607abb36
|
(v1.4.0.9011) message formatting
|
2020-10-27 15:56:51 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
3d096d96c2
|
(v1.4.0.9009) bugfix for older R version
|
2020-10-26 15:53:31 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
760d69a3e0
|
(v1.4.0.9008) like variations
|
2020-10-26 12:23:03 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
2ef7dfc8a3
|
(v1.4.0.9003) CoNS update
|
2020-10-20 21:00:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
ddae8085e1
|
(v1.4.0.9002) bugfix
|
2020-10-19 20:44:45 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4e9ccb4435
|
(v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening
|
2020-10-19 17:09:19 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
28e77680c5
|
(v1.4.0) matching score update
|
2020-10-08 11:16:03 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
baf510183c
|
(v1.3.0.9038) prefinal 1.4.0
|
2020-10-04 19:26:43 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4e0374af29
|
(v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup
|
2020-09-29 23:35:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
36ec8b0d81
|
(v1.3.0.9033) skimr fix
|
2020-09-28 11:00:59 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
519aada54f
|
(v1.3.0.9032) support skimr
|
2020-09-28 01:08:55 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
22f6ceb3e4
|
(v1.3.0.9031) matching score update
|
2020-09-26 16:51:17 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
050a9a04fb
|
(v1.3.0.9030) matching score update
|
2020-09-26 16:26:01 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9667c2994f
|
(v1.3.0.9029) eucast rules fix, unique()
|
2020-09-25 14:44:50 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c19095a3d5
|
(v1.3.0.9026) eucast expert rules 3.2
|
2020-09-24 00:30:11 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d049cce69b
|
(v1.3.0.9023) optimalisation
|
2020-09-19 11:54:01 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4e40e42011
|
(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix
|
2020-09-18 16:05:53 +02:00 |