|
|
fc269e667d
|
unit test fix
|
2024-05-20 18:58:35 +02:00 |
|
|
|
08a27922a8
|
new SDD and N for as.sir()
|
2024-05-20 15:27:04 +02:00 |
|
|
|
b68f47d985
|
improved algorithm of as.ab()
|
2024-05-12 16:24:44 +02:00 |
|
|
|
1bce7ed3d3
|
fix git hooks
|
2024-04-24 11:58:16 +02:00 |
|
|
|
7f18e66c4e
|
unit test fix
|
2024-04-24 11:42:43 +02:00 |
|
|
|
3e5c7d45c6
|
update intro logo
|
2024-04-24 09:58:24 +02:00 |
|
|
|
25089e811e
|
correct for high-level abx
|
2024-04-24 09:50:32 +02:00 |
|
|
|
0d8a91db49
|
rename pre-commit hook to pre-commit checks (no-check)
|
2024-04-23 10:55:48 +02:00 |
|
|
|
35f095cceb
|
fixes #148
|
2024-04-23 09:34:05 +02:00 |
|
|
|
2899b3c840
|
new mo_group_members()
|
2024-04-19 10:18:21 +02:00 |
|
|
|
94e9a4d99b
|
update MIC implementation
|
2024-04-07 20:22:59 +02:00 |
|
|
|
0039cb05d6
|
update MIC comparisons
|
2024-04-05 16:44:43 +02:00 |
|
|
|
bc4f8515e2
|
new Norwegian link
|
2024-03-03 23:24:57 +01:00 |
|
|
|
f2d245b0cb
|
update navbar colours
|
2024-03-03 19:07:09 +01:00 |
|
|
|
b303662ec6
|
fix veterinary for R<4
|
2024-02-24 19:26:35 +01:00 |
|
|
|
35963ca3dc
|
vctrs fix
|
2024-02-24 18:51:37 +01:00 |
|
|
|
4aa5413641
|
fix unit test
|
2024-02-24 18:14:50 +01:00 |
|
|
|
7be4dabbc0
|
support veterinary MIC/disk translation
|
2024-02-24 15:16:52 +01:00 |
|
Emil Rossing
|
74ea6c8c60
|
Added support for 'html' in italicize_taxonomy() (#134)
|
2024-02-13 13:47:07 +01:00 |
|
|
|
83e92fd88c
|
docu fix
|
2023-12-04 08:19:02 +01:00 |
|
|
|
7059568581
|
fix scale functions
|
2023-12-03 16:51:54 +01:00 |
|
|
|
c7461766ce
|
Remove RSI from package, add extra MIC scale functions
|
2023-12-03 11:34:48 +01:00 |
|
|
|
6f417d0ef2
|
add scale_x_mic()
|
2023-12-03 01:06:00 +01:00 |
|
|
|
4c11a7bd9c
|
v2.1.1
|
2023-10-22 15:51:27 +02:00 |
|
|
|
ca72a646d0
|
scientific notation for MICs
|
2023-10-20 15:45:00 +02:00 |
|
|
|
7cda9e575b
|
prepare for CRAN
|
2023-10-20 14:51:48 +02:00 |
|
|
|
7dc96794be
|
fix rounding MICs on R-devel
|
2023-07-20 08:24:27 +02:00 |
|
|
|
7a4628b73f
|
Added C. freundii complex and Y. pseudotuberculosis complex
|
2023-07-14 10:49:06 +02:00 |
|
|
|
fd480d1a9a
|
console hyperlink fix
|
2023-07-14 09:50:13 +02:00 |
|
|
|
eff164ecb1
|
indicate unique identifiers
|
2023-07-12 21:26:32 +02:00 |
|
|
|
ea2a4652e9
|
mouse-hover fixes
|
2023-07-12 15:27:43 +01:00 |
|
|
|
e1b4f99f4f
|
breakpoints fixes
|
2023-07-12 15:20:04 +01:00 |
|
|
|
0c46f61260
|
MO group fixes
|
2023-07-12 15:04:48 +01:00 |
|
|
|
7cd9ca274c
|
add strep groups to ABCG
|
2023-07-12 11:41:25 +01:00 |
|
|
|
66eeeb4b88
|
cleanup
|
2023-07-11 14:29:40 +02:00 |
|
|
|
8df1cd8d97
|
interpretation fixes
|
2023-07-11 09:50:45 +02:00 |
|
|
|
dab20c09f6
|
unit test
|
2023-07-10 18:30:26 +02:00 |
|
|
|
1b499bf012
|
fixes
|
2023-07-10 17:02:28 +02:00 |
|
|
|
a4e2e25e3f
|
reftbl in plots, speedup for as.sir() and mo_validate
|
2023-07-10 16:43:46 +02:00 |
|
|
|
70c601ca11
|
breakpoints UTI interpretation fix
|
2023-07-10 13:41:52 +02:00 |
|
|
|
3829311dd3
|
random() fix
|
2023-07-08 21:00:49 +02:00 |
|
|
|
acb534102b
|
new species groups, updated clinical breakpoints
|
2023-07-08 17:30:05 +02:00 |
|
|
|
2d97cca6d9
|
fix reference_df endless loop
|
2023-06-26 13:52:02 +02:00 |
|
|
|
1d9ee39cc7
|
fix for mo codes
|
2023-06-22 15:24:18 +02:00 |
|
Dr. Matthijs Berends
|
f065945d7b
|
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
|
2023-06-22 15:10:59 +02:00 |
|
|
|
9591688811
|
documentation update
|
2023-05-27 10:39:22 +02:00 |
|
|
|
e1966503ee
|
unit testing R4.3
|
2023-05-26 20:37:00 +02:00 |
|
|
|
766db4e21f
|
as.mo fix
|
2023-05-26 19:20:21 +02:00 |
|
|
|
c6135d2082
|
updated microorganism codes
|
2023-05-26 16:10:01 +02:00 |
|
|
|
0bcf55d3b6
|
improve as.mo()
|
2023-05-24 15:55:53 +02:00 |
|
|
|
3018fb87a9
|
icu_exclude in first_isolate(), fixes #110
|
2023-05-17 22:12:10 +02:00 |
|
|
|
91fa73dedf
|
add oxygen tolerance
|
2023-05-11 21:56:27 +02:00 |
|
|
|
bf08d136a0
|
fix coercing NA to custom codes, fixes #107
|
2023-05-08 13:04:18 +02:00 |
|
|
|
9148a2dcf4
|
fix mo_rank() for 'unknown' MOs
|
2023-04-20 15:20:41 +02:00 |
|
|
|
cabffb22fd
|
anaerobic codes
|
2023-04-17 11:26:19 +02:00 |
|
|
|
1a02d302d4
|
Fix translatable strings
|
2023-04-15 09:32:13 +02:00 |
|
|
|
ed70f95380
|
Fix clinical breakpoints
|
2023-04-14 23:14:34 +02:00 |
|
|
|
147f9112e9
|
Fix some WHONET codes
|
2023-04-14 11:12:26 +02:00 |
|
|
|
549790c2a6
|
website
|
2023-03-20 21:59:50 +01:00 |
|
|
|
c28cfa3a77
|
fix documentation
|
2023-03-16 08:55:37 +01:00 |
|
|
|
dd7cc86485
|
help page %like%
|
2023-03-14 19:49:50 +01:00 |
|
|
|
80cfc503c2
|
check for 2.0
|
2023-03-12 13:02:37 +01:00 |
|
|
|
9179e98e12
|
patient ID in first isolate
|
2023-03-11 17:13:19 +01:00 |
|
|
|
7ad8635994
|
documentation for 'data.table' AB selectors
|
2023-03-11 16:54:02 +01:00 |
|
|
|
45e840c02f
|
update NEWS
|
2023-03-11 14:43:31 +01:00 |
|
|
|
262598b8d7
|
support for old rsi arguments
|
2023-03-11 14:24:34 +01:00 |
|
|
|
4416394e10
|
website update
|
2023-02-26 21:26:58 +01:00 |
|
|
|
1d3d7d40bc
|
get episode unit tests
|
2023-02-24 19:54:56 +01:00 |
|
|
|
2c5a9bb622
|
new relative episode determination in get_episode(), fix for plotting disk/MIC values
|
2023-02-24 17:06:30 +01:00 |
|
|
|
92029c9e95
|
remove note
|
2023-02-24 10:31:36 +01:00 |
|
|
|
049baf0a71
|
fix for antibiograms on R < 3.5
|
2023-02-24 09:43:10 +01:00 |
|
|
|
e70f2cd32c
|
knitr format
|
2023-02-23 16:27:40 +01:00 |
|
|
|
a84101db08
|
N for only 1 AB in
|
2023-02-22 16:26:13 +01:00 |
|
|
|
551aaf6517
|
auto-remove missing ABs in antibiogram()
|
2023-02-22 16:00:52 +01:00 |
|
|
|
c2cfc5ef84
|
fix for antibiogram(), transform WHONET data set to sir
|
2023-02-22 15:40:05 +01:00 |
|
|
|
dad25302f2
|
make rsi work in more cases, documentation update
|
2023-02-22 14:38:57 +01:00 |
|
|
|
8d902410f9
|
unit tests
|
2023-02-18 14:56:06 +01:00 |
|
|
|
8dcf101a9c
|
website
|
2023-02-18 13:08:08 +01:00 |
|
|
|
ba255ddb00
|
website
|
2023-02-18 11:57:17 +01:00 |
|
|
|
e890360986
|
website syntax update
|
2023-02-17 11:39:00 +01:00 |
|
|
|
714a048fa9
|
italicise antibiogram
|
2023-02-17 09:42:51 +01:00 |
|
|
|
db2830124f
|
fix for using dplyr::select()
|
2023-02-15 19:48:34 +01:00 |
|
|
|
a82552dd88
|
fix for group selections
|
2023-02-15 17:37:49 +01:00 |
|
|
|
ef716f6ee3
|
doc fix
|
2023-02-15 17:16:40 +01:00 |
|
|
|
6016547f1f
|
support for dplyr 1.1.0
|
2023-02-15 17:02:10 +01:00 |
|
|
|
a4cd38c433
|
fix for R < 3.2, expect_warning() on hold
|
2023-02-14 10:41:01 +01:00 |
|
|
|
3396236eef
|
unit test fixes
|
2023-02-13 16:56:25 +01:00 |
|
|
|
b6d2b1398d
|
Fix for antibiogram() in R <=3.4
|
2023-02-13 10:21:43 +01:00 |
|
|
|
45a9697c84
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
|
|
68abb00c59
|
add include_screening to as.sir()
|
2023-02-12 15:09:54 +01:00 |
|
|
|
c740967cf2
|
fix for binding rows
|
2023-02-12 11:20:14 +01:00 |
|
|
|
c51fb24363
|
pm_bind_rows
|
2023-02-11 22:28:48 +01:00 |
|
|
|
b146de6d7f
|
fix for bind_rows2, added 4 langs
|
2023-02-11 21:57:12 +01:00 |
|
|
|
2007c3eef3
|
bind_rows
|
2023-02-10 17:09:48 +01:00 |
|
|
|
03294c7901
|
fix for Salmonella group A, unit tests
|
2023-02-10 16:47:25 +01:00 |
|
|
|
bc434db835
|
bring back antibiogram(), without deps
|
2023-02-10 16:18:00 +01:00 |
|
|
|
70a7ba0206
|
fix first isolate
|
2023-02-10 13:13:17 +01:00 |
|
|
|
1a0dc4bf46
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
|
|
|
aa48c6bf53
|
pm fixes
|
2023-02-08 16:51:41 +01:00 |
|
|
|
822e9de82c
|
pm update, unit test fix?
|
2023-02-08 13:48:06 +01:00 |
|
