|
|
6c542268be
|
unit tests
|
2019-02-21 23:32:30 +01:00 |
|
|
|
fb1fc3686c
|
Catalogue of life
|
2019-02-20 00:04:48 +01:00 |
|
|
|
54f8258f8c
|
Catalogue of Life, replaces ITIS
|
2019-02-18 02:33:37 +01:00 |
|
|
|
c56b179857
|
as.rsi warning, site update
|
2019-02-09 22:16:24 +01:00 |
|
|
|
ed30312048
|
mo codes for WHONET
|
2019-02-08 16:06:54 +01:00 |
|
|
|
587e00b7be
|
is.rsi.eligible update
|
2019-02-04 12:24:07 +01:00 |
|
|
|
0b3dc0231f
|
freq fix
|
2019-01-30 16:00:55 +01:00 |
|
|
|
6aae206320
|
WHONET/EARS-Net support
|
2019-01-29 00:06:50 +01:00 |
|
|
|
f6336fdd89
|
quasiquotation for freq()
|
2019-01-28 11:20:32 +01:00 |
|
|
|
18b75356a9
|
re-add atc_ddd and atc_groups
|
2019-01-27 13:33:43 +01:00 |
|
|
|
f836722269
|
atc_ functions
|
2019-01-26 23:22:56 +01:00 |
|
|
|
f4ff98b470
|
WHO update, antibiotics update
|
2019-01-25 13:18:41 +01:00 |
|
|
|
9529d097b6
|
as.mo
|
2019-01-21 21:24:40 +01:00 |
|
|
|
46dcc7e2e8
|
set_mo_source
|
2019-01-21 15:53:01 +01:00 |
|
|
|
c6c3088e9f
|
select() fix for freq
|
2019-01-17 12:08:04 +01:00 |
|
|
|
046d195064
|
resistance predict
|
2019-01-15 12:45:24 +01:00 |
|
|
|
3661df7365
|
direct warning if failing as.mo
|
2019-01-12 16:45:20 +01:00 |
|
|
|
641d866db2
|
guess_ab_col, benchmarks
|
2019-01-11 20:37:23 +01:00 |
|
|
|
193a2d2863
|
EUCAST update, as.mo bugfix for empty vlaues
|
2019-01-08 16:23:45 +01:00 |
|
|
|
0205b6178d
|
guess_mo deprecation
|
2019-01-06 16:40:55 +01:00 |
|
|
|
2c798547bf
|
language
|
2019-01-05 21:40:04 +01:00 |
|
|
|
80ea555663
|
guess_ab
|
2019-01-03 23:56:19 +01:00 |
|
|
|
6b2d464f8c
|
big website update, licence txt update
|
2019-01-02 23:24:07 +01:00 |
|
|
|
2e4d703338
|
eucast rules fix, 1st isolate fix, website update
|
2018-12-31 01:48:53 +01:00 |
|
|
|
92a32b62a7
|
new website, freq updates
|
2018-12-29 22:24:19 +01:00 |
|
|
|
0b8084871d
|
dplyr 0.8.0 support, fixes #7
|
2018-12-22 22:39:34 +01:00 |
|
|
|
b937662a97
|
limits for scale_y_percent - Licence update
|
2018-12-16 22:45:12 +01:00 |
|
|
|
2018d5b477
|
age and age_groups
|
2018-12-15 22:40:07 +01:00 |
|
|
|
857f565db0
|
reorganised notes and warnings
|
2018-12-14 10:52:20 +01:00 |
|
|
|
dec4947103
|
freq header fix for NAs
|
2018-12-14 10:08:51 +01:00 |
|
|
|
81af7be36e
|
note about portions
|
2018-12-14 07:23:25 +01:00 |
|
|
|
01a6d56334
|
add kingdom to mo_taxonomy
|
2018-12-10 21:47:25 +01:00 |
|
|
|
5ab7eb07bc
|
keyab automatic
|
2018-12-10 15:14:29 +01:00 |
|
|
|
9478ab71be
|
freq - decimals
|
2018-12-10 10:13:40 +01:00 |
|
|
|
8e8a9cd190
|
AI improvements
|
2018-12-07 12:04:55 +01:00 |
|
|
|
60fe98bbbd
|
better as.mo handling
|
2018-12-06 14:36:39 +01:00 |
|
|
|
5cfa5bbfe3
|
v0.5.0
|
2018-11-30 16:16:04 +01:00 |
|
|
|
9ddf6dc530
|
support A. species for as.mo, cleanup
|
2018-11-24 20:25:09 +01:00 |
|
|
|
a8132922af
|
unit test read.4d, unselecting freq cols
|
2018-11-19 13:00:22 +01:00 |
|
|
|
4fcc2b409a
|
MDRO update
|
2018-11-16 20:50:50 +01:00 |
|
|
|
fab64e6728
|
read.4D improvements
|
2018-11-15 12:42:35 +01:00 |
|
|
|
6b0f4ffbd4
|
new kingdom
|
2018-11-09 13:11:54 +01:00 |
|
|
|
84e08f516a
|
grouping var for freq
|
2018-11-06 16:41:59 +01:00 |
|
|
|
d15bb2ab3f
|
read_4D
|
2018-11-05 15:30:49 +01:00 |
|
|
|
d07e9b904e
|
new function get_locale
|
2018-11-05 13:20:32 +01:00 |
|
|
|
d0bc05e5b1
|
speed improvement is.rsi.eligible
|
2018-11-02 14:55:29 +01:00 |
|
|
|
5476fecc73
|
eucast update
|
2018-11-01 20:23:33 +01:00 |
|
|
|
f7687557c9
|
eucast updates
|
2018-11-01 17:06:08 +01:00 |
|
|
|
9cd4ab928a
|
speed improvement as.mo, freq title
|
2018-10-31 12:10:49 +01:00 |
|
|
|
87757748bd
|
switch to gitlab
|
2018-10-23 16:49:40 +02:00 |
|
|
|
7997de6a6d
|
mdro and 1st isolate improvements
|
2018-10-23 11:15:05 +02:00 |
|
|
|
299c5bea43
|
na freq, removed factors
|
2018-10-23 09:42:26 +02:00 |
|
|
|
c2a93b46db
|
breaks param, tidyr dep change, freq markdown
|
2018-10-22 12:32:59 +02:00 |
|
|
|
ec15b82fd6
|
param header for freq
|
2018-10-19 21:52:08 +02:00 |
|
|
|
86b03577a7
|
fix for as.mo, added also_single_tested
|
2018-10-19 13:53:31 +02:00 |
|
|
|
b464dd524a
|
new verbose
|
2018-10-19 00:17:03 +02:00 |
|
|
|
0ef91be3ac
|
param rules for EUCAST
|
2018-10-18 12:10:10 +02:00 |
|
|
|
693f64bdbf
|
new EUCAST rules: clinical breakpoints
|
2018-10-17 17:32:34 +02:00 |
|
|
|
d5a41de711
|
parameter combine_IR
|
2018-10-16 09:59:31 +02:00 |
|
|
|
5b5b95a47b
|
count_all and some fixes
|
2018-10-12 16:35:18 +02:00 |
|
|
|
e7d937d36e
|
update NEWS
|
2018-10-10 10:50:19 +02:00 |
|
|
|
95c9fdc552
|
CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
|
2018-10-09 13:53:33 +02:00 |
|
|
|
c7c57f4042
|
0.4.0, just published on CRAN
|
2018-10-01 19:36:42 +02:00 |
|
|
|
ed17db0263
|
renamed year columns to ref
|
2018-10-01 14:44:40 +02:00 |
|
|
|
3119a221e5
|
authors from ITIS, diff for freq
|
2018-10-01 11:39:43 +02:00 |
|
|
|
92c9cc2608
|
diff for freq, fix for mo_shortname
|
2018-09-29 21:54:32 +02:00 |
|
|
|
768fe17324
|
removed clipboard functions as it violated CRAN policies
|
2018-09-28 16:05:18 +02:00 |
|
|
|
9c566585b0
|
first inclusion of ITIS data
|
2018-09-24 23:33:29 +02:00 |
|
|
|
5d80cef338
|
added taxonomic data from ITIS
|
2018-09-17 20:53:32 +02:00 |
|
|
|
7680e4edd8
|
add shortest and longest to freq for characters
|
2018-09-17 09:42:09 +02:00 |
|
|
|
db14781593
|
add labels_rsi_count
|
2018-09-16 22:11:17 +02:00 |
|
|
|
b792a2754e
|
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
|
2018-09-16 16:43:29 +02:00 |
|
|
|
b0ca49d68d
|
small improvement for is.rsi.eligible, more unit tests
|
2018-09-14 11:54:01 +02:00 |
|
|
|
cf5711fb0b
|
algorithm improvement
|
2018-09-14 10:31:21 +02:00 |
|
|
|
cb0d74a4f0
|
support for French and Italian, added quote to freq
|
2018-09-10 15:45:25 +02:00 |
|
|
|
b83e6a9380
|
algoritm improvement, removed all Catabacter except for C. hongkongensis
|
2018-09-10 11:40:54 +02:00 |
|
|
|
26f5be0033
|
support for portuguese, language determination based on system
|
2018-09-08 16:06:47 +02:00 |
|
|
|
e39a9a8b05
|
added mo_shortname
|
2018-09-05 10:51:46 +02:00 |
|
|
|
790bd1622d
|
added vanA to vanE positive Enterococci
|
2018-09-05 09:49:19 +02:00 |
|
|
|
b388e3fee7
|
Support for German and Spanish microorganism properties, cleanup
|
2018-09-04 11:33:30 +02:00 |
|
|
|
5405002119
|
news update
|
2018-09-03 11:22:28 +02:00 |
|
|
|
e25dd0e282
|
fix for joins
|
2018-09-03 10:04:49 +02:00 |
|
|
|
75fe4d401f
|
new MOs, cleanup
|
2018-09-01 21:19:46 +02:00 |
|
|
|
5965d3c794
|
replaced bactid by mo
|
2018-08-31 13:36:19 +02:00 |
|
|
|
d9e68e0a50
|
ggplot_rsi example update, more unit tests
|
2018-08-29 16:25:57 +02:00 |
|
|
|
029157b3be
|
163 new trade names, added ab_tradenames
|
2018-08-29 12:27:37 +02:00 |
|
|
|
972fc4f6c7
|
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
|
2018-08-28 13:51:13 +02:00 |
|
|
|
2acdb1981c
|
atc and bactid functions, readme update
|
2018-08-25 22:01:14 +02:00 |
|
|
|
baaf4cc3e1
|
few extra tests
|
2018-08-24 14:18:38 +02:00 |
|
|
|
a100d07da6
|
removed ratio, better rsi_calc, update for freq
|
2018-08-24 11:08:20 +02:00 |
|
|
|
febd0ca885
|
geom_rsi - any parameter
|
2018-08-23 21:27:15 +02:00 |
|
|
|
8ab93b6688
|
unit tests
|
2018-08-23 01:01:50 +02:00 |
|
|
|
da5379c881
|
quasiquotation, alpha for geom_rsi
|
2018-08-23 00:40:36 +02:00 |
|
Christian Luz
|
87d08905cc
|
small change in mutate example
|
2018-08-22 12:55:05 +02:00 |
|
|
|
3e87c8f409
|
count_* functions
|
2018-08-22 00:02:26 +02:00 |
|
|
|
bc7e36b533
|
v0.3.0
|
2018-08-14 14:06:18 +02:00 |
|
|
|
7584c929a5
|
new AppVeyor environment
|
2018-08-14 08:57:17 +02:00 |
|
|
|
e5193c7749
|
AppVeyor
|
2018-08-13 23:05:53 +02:00 |
|
|
|
59ce1eb1b1
|
ggplot_rsi improvements
|
2018-08-13 16:42:37 +02:00 |
|
|
|
dba06c3295
|
abname improvement, small fixes
|
2018-08-13 11:00:53 +02:00 |
|
|
|
1ba7d883fe
|
new ggplot enhancement
|
2018-08-11 21:30:00 +02:00 |
|
|
|
53fa198e35
|
new portion functions
|
2018-08-10 15:01:05 +02:00 |
|
|
|
ae2433a020
|
rsi family for resistance analysis
|
2018-08-03 14:49:29 +02:00 |
|
|
|
bd9bcfef78
|
thesis advisors
|
2018-08-03 09:59:39 +02:00 |
|
|
|
6262315527
|
Becker classification
Lancefield classification
Added Lancefield groups to `microorganisms` data set
|
2018-08-02 13:15:45 +02:00 |
|
|
|
edd2dd09dc
|
rsi for freq
|
2018-08-01 22:37:28 +02:00 |
|
|
|
7c667eb732
|
emph guess_bactid
|
2018-08-01 08:03:31 +02:00 |
|
|
|
837dae925d
|
travis update
|
2018-07-30 01:21:37 +02:00 |
|
|
|
211e3bae14
|
remove reshape2 dependency
|
2018-07-30 01:18:40 +02:00 |
|
|
|
510e8f22aa
|
more unit tests
|
2018-07-30 00:57:49 +02:00 |
|
|
|
826694323b
|
new functions R, RI, SI, S
|
2018-07-29 22:14:51 +02:00 |
|
|
|
8421e3f005
|
more mic classes
|
2018-07-28 10:48:27 +02:00 |
|
|
|
498e88b5cf
|
improvement for forecasting resistance
|
2018-07-26 16:30:42 +02:00 |
|
|
|
d9e204031d
|
update to septic_patients, speed improvements
|
2018-07-25 14:17:04 +02:00 |
|
|
|
8421638b60
|
new class bactid
|
2018-07-23 14:14:03 +02:00 |
|
|
|
ad662d7bab
|
new col names for key_antibiotics
|
2018-07-19 15:11:23 +02:00 |
|
|
|
0d64c166f0
|
keyab fixes
|
2018-07-17 19:51:09 +02:00 |
|
|
|
5cb9c541f8
|
new algorithm key abs
|
2018-07-17 13:02:05 +02:00 |
|
|
|
a5a4354651
|
speed improvements
|
2018-07-17 10:32:26 +02:00 |
|
|
|
715a7630ca
|
support format.freq
|
2018-07-16 16:41:48 +02:00 |
|
|
|
6eaf33baf3
|
speed improvements
|
2018-07-15 22:56:41 +02:00 |
|
|
|
b6655f6454
|
Welcome C++!
|
2018-07-13 17:23:46 +02:00 |
|
|
|
a28289562a
|
remove print function, out of scope
|
2018-07-11 20:12:19 +02:00 |
|
|
|
f63414d519
|
new g.test, extra unit tests
|
2018-07-10 12:27:07 +02:00 |
|
|
|
fc30d3fb13
|
freq: support for table
|
2018-07-09 14:02:58 +02:00 |
|
|
|
14b990d769
|
kurtosis, skewness, start with ML
|
2018-07-08 22:14:55 +02:00 |
|
|
|
34ee0247ac
|
addins and small improvements to microorganisms dataset
|
2018-07-04 17:20:03 +02:00 |
|
|
|
10fce8382c
|
include IQR and MAD in freq
|
2018-07-03 11:30:40 +02:00 |
|
|
|
3d0d21f322
|
rename vector2ratio to ratio
|
2018-07-02 11:14:20 +02:00 |
|
|
|
3527894b49
|
new g.test() and edited freq()
|
2018-07-01 21:40:37 +02:00 |
|
|
|
649a8025aa
|
add clipboard functions again
|
2018-06-27 15:54:56 +02:00 |
|
|
|
a9bd5472d0
|
top_freq
|
2018-06-20 14:47:37 +02:00 |
|
|
|
4a027f3c34
|
extra unit tests, add row.names to freq
|
2018-06-19 15:20:14 +02:00 |
|
|
|
bdc860e29c
|
atc_groups
|
2018-06-19 10:05:38 +02:00 |
|
|
|
0a5898b17d
|
fix for printing tibbles, improve guess_bactid
|
2018-06-08 12:06:54 +02:00 |
|
|
|
efdf5a3dc5
|
prevent dplyr:row_number warning
|
2018-05-31 14:19:25 +02:00 |
|
uscloud
|
dcc26dd942
|
Update freq function
|
2018-05-22 16:34:22 +02:00 |
|
|
|
95f7c78fd6
|
edit vignette title
|
2018-05-14 11:54:08 +02:00 |
|
|
|
f05e7178cb
|
added vignette of freq
|
2018-05-09 11:44:46 +02:00 |
|
|
|
c0fc82c794
|
Added function n_rsi
|
2018-05-02 14:56:25 +02:00 |
|
|
|
19ccc51f40
|
remove clipboard functions
|
2018-05-01 09:36:45 +02:00 |
|
|
|
970e3ed7f1
|
EUCAST rules for MDRO
|
2018-04-25 15:33:58 +02:00 |
|
|
|
0b22ddef8e
|
more unit tests
|
2018-04-20 13:45:34 +02:00 |
|
|
|
82fec5cc51
|
Try to support older R versions
|
2018-04-19 14:10:57 +02:00 |
|
|
|
e7396b8f39
|
Try to support older R versions
|
2018-04-19 12:50:23 +02:00 |
|
|
|
4b5530ed64
|
Try to support older R versions
|
2018-04-18 15:19:00 +02:00 |
|
|
|
a814d82b4b
|
try to support older R versions
|
2018-04-18 14:50:16 +02:00 |
|
|
|
2509e2413d
|
MDRO, freq tables, new print format for tibbles
|
2018-04-18 12:24:54 +02:00 |
|
