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87757748bd
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switch to gitlab
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2018-10-23 16:49:40 +02:00 |
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707aa20a37
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fixes
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2018-10-23 14:59:36 +02:00 |
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0062a3facb
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Add .gitlab-ci.yml
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2018-10-23 12:53:42 +00:00 |
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7997de6a6d
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mdro and 1st isolate improvements
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2018-10-23 11:15:05 +02:00 |
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299c5bea43
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na freq, removed factors
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2018-10-23 09:42:26 +02:00 |
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9c56257da1
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freq - print title bold in markdown
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2018-10-22 13:06:54 +02:00 |
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c2a93b46db
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breaks param, tidyr dep change, freq markdown
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2018-10-22 12:32:59 +02:00 |
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ec15b82fd6
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param header for freq
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2018-10-19 21:52:08 +02:00 |
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86b03577a7
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fix for as.mo, added also_single_tested
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2018-10-19 13:53:31 +02:00 |
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032c0d51ef
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better verbose in EUCAST
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2018-10-19 00:57:10 +02:00 |
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b464dd524a
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new verbose
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2018-10-19 00:17:03 +02:00 |
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5727800b9a
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readme fix
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2018-10-18 21:43:12 +02:00 |
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0ef91be3ac
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param rules for EUCAST
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2018-10-18 12:10:10 +02:00 |
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693f64bdbf
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new EUCAST rules: clinical breakpoints
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2018-10-17 17:32:34 +02:00 |
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d5a41de711
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parameter combine_IR
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2018-10-16 09:59:31 +02:00 |
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5b5b95a47b
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count_all and some fixes
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2018-10-12 16:35:18 +02:00 |
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e7d937d36e
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update NEWS
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2018-10-10 10:50:19 +02:00 |
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67521394f6
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more unit tests
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2018-10-09 15:41:44 +02:00 |
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95c9fdc552
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CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
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2018-10-09 13:53:33 +02:00 |
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c7c57f4042
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0.4.0, just published on CRAN
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2018-10-01 19:36:42 +02:00 |
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6d761436f7
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benchmarks on readme and speed improvement for direct mo codes
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2018-10-01 16:26:02 +02:00 |
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ed17db0263
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renamed year columns to ref
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2018-10-01 14:44:40 +02:00 |
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3119a221e5
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authors from ITIS, diff for freq
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2018-10-01 11:39:43 +02:00 |
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92c9cc2608
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diff for freq, fix for mo_shortname
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2018-09-29 21:54:32 +02:00 |
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a6aa9e95fb
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completed old taxonomic names
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2018-09-28 20:13:13 +02:00 |
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768fe17324
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removed clipboard functions as it violated CRAN policies
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2018-09-28 16:05:18 +02:00 |
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2b0080995e
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speed improvement for as.mo, more old taxonomic names
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2018-09-27 23:23:48 +02:00 |
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450992baea
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new: 1680 old taxonomic names
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2018-09-25 16:44:40 +02:00 |
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da60f27877
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travis cant find knitr vignette builder
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2018-09-25 00:36:35 +02:00 |
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9c566585b0
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first inclusion of ITIS data
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2018-09-24 23:33:29 +02:00 |
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df5d82fff3
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unit tests
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2018-09-17 21:51:21 +02:00 |
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5d80cef338
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added taxonomic data from ITIS
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2018-09-17 20:53:32 +02:00 |
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7680e4edd8
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add shortest and longest to freq for characters
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2018-09-17 09:42:09 +02:00 |
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db14781593
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add labels_rsi_count
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2018-09-16 22:11:17 +02:00 |
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b792a2754e
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added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
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2018-09-16 16:43:29 +02:00 |
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b0ca49d68d
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small improvement for is.rsi.eligible, more unit tests
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2018-09-14 11:54:01 +02:00 |
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cf5711fb0b
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algorithm improvement
|
2018-09-14 10:31:21 +02:00 |
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d049ec9e69
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ggplot2_rsi fix
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2018-09-13 14:48:34 +02:00 |
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cb0d74a4f0
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support for French and Italian, added quote to freq
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2018-09-10 15:45:25 +02:00 |
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b83e6a9380
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algoritm improvement, removed all Catabacter except for C. hongkongensis
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2018-09-10 11:40:54 +02:00 |
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4816419f0c
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AI improvements for microorganisms
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2018-09-09 12:11:44 +02:00 |
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936198372e
|
translate CoNS
|
2018-09-08 16:24:12 +02:00 |
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26f5be0033
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support for portuguese, language determination based on system
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2018-09-08 16:06:47 +02:00 |
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b8a6c9af19
|
allow failure on macOS
|
2018-09-07 10:20:01 +02:00 |
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0de65438b1
|
vignet fix
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2018-09-07 09:32:31 +02:00 |
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c5073f2fd1
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small fix for microorganisms data set
|
2018-09-06 16:50:03 +02:00 |
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de36b0be23
|
fix for empty values in mo_property
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2018-09-05 12:21:27 +02:00 |
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e39a9a8b05
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added mo_shortname
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2018-09-05 10:51:46 +02:00 |
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790bd1622d
|
added vanA to vanE positive Enterococci
|
2018-09-05 09:49:19 +02:00 |
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b388e3fee7
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Support for German and Spanish microorganism properties, cleanup
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2018-09-04 11:33:30 +02:00 |
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