530 Commits

Author	SHA1	Message	Date
dr. M.S. (Matthijs) Berends	65c6702b21	(v0.7.1.9004) atc class removal	2019-06-27 11:57:45 +02:00
dr. M.S. (Matthijs) Berends	453c159eac	0.7.1	2019-06-23 14:49:17 +02:00
dr. M.S. (Matthijs) Berends	c9156c004a	(v0.7.0.9013) mo_synonym fix	2019-06-22 14:49:12 +02:00
dr. M.S. (Matthijs) Berends	7094c1f459	website update	2019-06-16 22:14:43 +02:00
dr. M.S. (Matthijs) Berends	9c39c35f86	(v0.7.0.9010) mo_synonyms, plot/barplot fixes	2019-06-16 21:42:40 +02:00
dr. M.S. (Matthijs) Berends	980be2b22d	(v0.7.0.9009) global note	2019-06-13 16:40:35 +02:00
dr. M.S. (Matthijs) Berends	254745061c	(v0.7.0.9008) T. vaginalis, rsi_df	2019-06-13 14:28:46 +02:00
dr. M.S. (Matthijs) Berends	699e87ab4a	(v0.7.0.9007) renamed notes fix	2019-06-12 16:08:20 +02:00
dr. M.S. (Matthijs) Berends	44ab53128e	(v0.7.0.9006) ab algorithm fix for ATC codes	2019-06-11 15:31:32 +02:00
dr. M.S. (Matthijs) Berends	8f674e19bb	(v0.7.0.9005) ab algorithm update	2019-06-11 14:18:25 +02:00
dr. M.S. (Matthijs) Berends	ec48f1d83b	(v0.7.0.9003) scale fix	2019-06-08 23:50:06 +02:00
dr. M.S. (Matthijs) Berends	f50d3a5ba1	(v0.7.0.9002) scale fix	2019-06-08 15:00:28 +02:00
dr. M.S. (Matthijs) Berends	f02679fb63	(v0.7.0.9001) new pathovars, small fixes	2019-06-07 22:47:37 +02:00
dr. M.S. (Matthijs) Berends	270aa0dd33	v0.7.0	2019-06-03 17:45:22 +02:00
dr. M.S. (Matthijs) Berends	bd73988f15	(v0.6.1.9053) prerelease fixes	2019-06-02 19:23:19 +02:00
dr. M.S. (Matthijs) Berends	2667fff8a7	(v0.6.1.9050) support staged install	2019-06-01 20:40:49 +02:00
dr. M.S. (Matthijs) Berends	a665612cb8	(v0.6.1.9049) data creation fix	2019-05-31 21:20:16 +02:00
dr. M.S. (Matthijs) Berends	0a6580b4eb	(v0.6.1.9047) ggplot fix	2019-05-31 20:48:22 +02:00
dr. M.S. (Matthijs) Berends	4ed27c7e7a	(v0.6.1.9046) ggplot fix	2019-05-31 20:25:57 +02:00
dr. M.S. (Matthijs) Berends	f03f71eced	(v0.6.1.9045) age test fix	2019-05-31 14:40:15 +02:00
dr. M.S. (Matthijs) Berends	493ae2ba0c	(v0.6.1.9044) first_isolate fix for species	2019-05-31 14:25:11 +02:00
dr. M.S. (Matthijs) Berends	1f8ee3ec3e	(v0.6.1.9043) age doc fix	2019-05-30 08:51:38 +02:00
dr. M.S. (Matthijs) Berends	8b5e2b030b	added boxplot for (grouped) freq()	2019-05-29 19:56:17 +02:00
dr. M.S. (Matthijs) Berends	62e6f41961	website update	2019-05-29 00:36:48 +02:00
dr. M.S. (Matthijs) Berends	27380fa021	fixes for microorganisms.codes	2019-05-28 16:50:40 +02:00
dr. M.S. (Matthijs) Berends	7e0e171512	website update	2019-05-23 19:39:07 +02:00
dr. M.S. (Matthijs) Berends	3688fcaabf	doc fix	2019-05-23 17:59:43 +02:00
dr. M.S. (Matthijs) Berends	bbf8b611e3	doc fix	2019-05-23 17:35:58 +02:00
dr. M.S. (Matthijs) Berends	60983a1640	added mdr_tb()	2019-05-23 16:58:59 +02:00
dr. M.S. (Matthijs) Berends	07d26cd485	faster determination of abx	2019-05-20 19:12:41 +02:00
dr. M.S. (Matthijs) Berends	6eb08a2ea3	new git flow to repository	2019-05-20 14:16:53 +02:00
dr. M.S. (Matthijs) Berends	4ca00e1868	speed improvement eucast_rules(), support more old MO codes	2019-05-20 12:00:18 +02:00
dr. M.S. (Matthijs) Berends	b0033dae1b	website update	2019-05-17 20:22:04 +02:00
dr. M.S. (Matthijs) Berends	c3ae6b7699	freq fix	2019-05-17 09:09:18 +02:00
dr. M.S. (Matthijs) Berends	5eda991c47	ab_info fix	2019-05-16 22:07:31 +02:00
dr. M.S. (Matthijs) Berends	4c3cf85a65	ab_info, other bug fixes	2019-05-16 21:20:00 +02:00
dr. M.S. (Matthijs) Berends	f6bf54b37d	documentation fix	2019-05-13 20:16:51 +02:00
dr. M.S. (Matthijs) Berends	2ea0c93e44	documentation fix	2019-05-13 16:35:48 +02:00
dr. M.S. (Matthijs) Berends	cc403169c6	first isolate missing dates fix	2019-05-13 14:56:23 +02:00
dr. M.S. (Matthijs) Berends	0dc0715dc6	CI tests	2019-05-13 12:21:57 +02:00
dr. M.S. (Matthijs) Berends	38a4421450	CI tests	2019-05-13 10:10:16 +02:00
dr. M.S. (Matthijs) Berends	fcc77164e9	mdro fix	2019-05-11 23:30:10 +02:00
dr. M.S. (Matthijs) Berends	68cc7ef0d0	new antibiotics	2019-05-10 16:44:59 +02:00
dr. M.S. (Matthijs) Berends	73f1ee1159	freq/age fix	2019-04-11 00:54:48 +02:00
dr. M.S. (Matthijs) Berends	461eec9bac	cfta streptococci, codecov.yml	2019-04-09 14:59:17 +02:00
dr. M.S. (Matthijs) Berends	cffb7787d8	cfta streptococci	2019-04-09 10:34:40 +02:00
dr. M.S. (Matthijs) Berends	30b559827c	documentation update	2019-04-07 22:40:02 +02:00
dr. M.S. (Matthijs) Berends	51fdc5d6cc	self-learning off	2019-04-06 09:38:23 +02:00
dr. M.S. (Matthijs) Berends	fbc9191b13	new EUCAST rules algorithm	2019-04-05 18:47:39 +02:00
dr. M.S. (Matthijs) Berends	56d4b4719f	ci for devel and freq fix	2019-03-29 21:45:46 +01:00
dr. M.S. (Matthijs) Berends	7dca9791a2	v0.6.1	2019-03-28 22:30:19 +01:00
dr. M.S. (Matthijs) Berends	713290a9a6	v0.6.1	2019-03-28 22:05:03 +01:00
dr. M.S. (Matthijs) Berends	b25f2d6213	v0.6.1	2019-03-28 21:33:28 +01:00
dr. M.S. (Matthijs) Berends	8a1d384d9c	ci fixes	2019-03-26 15:34:04 +01:00
dr. M.S. (Matthijs) Berends	afd12d5486	ci fixes	2019-03-26 14:42:56 +01:00
dr. M.S. (Matthijs) Berends	29f444543d	added Becker 2019	2019-03-26 14:24:03 +01:00
dr. M.S. (Matthijs) Berends	c6a12266e7	DSMZ data	2019-03-18 14:29:41 +01:00
dr. M.S. (Matthijs) Berends	b561de462a	global var	2019-03-15 20:15:56 +01:00
dr. M.S. (Matthijs) Berends	e18a1f1f17	as.mo improvement	2019-03-15 17:36:42 +01:00
dr. M.S. (Matthijs) Berends	fdffc2791b	memory for as.mo()	2019-03-15 13:57:25 +01:00
dr. M.S. (Matthijs) Berends	504a042fba	uncertainty levels, new WHONET codes	2019-03-12 12:19:27 +01:00
dr. M.S. (Matthijs) Berends	b319b89750	WHONET fix	2019-03-09 08:21:00 +01:00
dr. M.S. (Matthijs) Berends	0c0c6e289b	small as.mo fix	2019-03-06 14:39:02 +01:00
dr. M.S. (Matthijs) Berends	5c7a061a5d	filter_ab_class fix	2019-03-06 09:32:48 +01:00
dr. M.S. (Matthijs) Berends	74e0ae21fd	con WHONET, filter ab class	2019-03-05 22:47:42 +01:00
dr. M.S. (Matthijs) Berends	e835525cf6	unknown codes, rsi fix	2019-03-02 22:47:04 +01:00
dr. M.S. (Matthijs) Berends	c5efb272fd	mo_source improvement	2019-03-01 09:34:04 +01:00
dr. M.S. (Matthijs) Berends	2565b60024	rlang dependency, new fungi	2019-02-28 13:56:28 +01:00
dr. M.S. (Matthijs) Berends	cf3bdb54c7	global var fix	2019-02-27 19:02:47 +01:00
dr. M.S. (Matthijs) Berends	95c49fdf79	global var fix	2019-02-27 17:39:39 +01:00
dr. M.S. (Matthijs) Berends	642f6571fe	as.mo fix	2019-02-27 14:22:07 +01:00
dr. M.S. (Matthijs) Berends	54162522bd	age_groups fix	2019-02-27 11:36:12 +01:00
dr. M.S. (Matthijs) Berends	4ba2ff68e0	language fix	2019-02-26 13:02:04 +01:00
dr. M.S. (Matthijs) Berends	f9ded23023	as.mo improvement	2019-02-26 12:33:26 +01:00
dr. M.S. (Matthijs) Berends	f25a4b3679	as.mo improvements	2019-02-25 16:07:21 +01:00
dr. M.S. (Matthijs) Berends	c506d2893b	as.mo improvements	2019-02-25 15:52:32 +01:00
dr. M.S. (Matthijs) Berends	0ec76cfa98	as.mo improvement	2019-02-25 10:42:57 +01:00
dr. M.S. (Matthijs) Berends	e65d1a3036	as.mo improvement	2019-02-23 21:49:02 +01:00
dr. M.S. (Matthijs) Berends	f16a152d06	as.mo improvements	2019-02-23 18:08:28 +01:00
dr. M.S. (Matthijs) Berends	1a6314769b	as.mo improvement	2019-02-23 16:02:31 +01:00
dr. M.S. (Matthijs) Berends	41ad7a22c8	mo_rank mo_url, added Tremellales	2019-02-22 22:12:10 +01:00
dr. M.S. (Matthijs) Berends	6c542268be	unit tests	2019-02-21 23:32:30 +01:00
dr. M.S. (Matthijs) Berends	68a9a35ed6	algorithm update	2019-02-21 18:55:52 +01:00
dr. M.S. (Matthijs) Berends	13120f465f	website update	2019-02-20 13:57:23 +01:00
dr. M.S. (Matthijs) Berends	8dc027309e	website update	2019-02-20 10:38:24 +01:00
dr. M.S. (Matthijs) Berends	fb1fc3686c	Catalogue of life	2019-02-20 00:04:48 +01:00
dr. M.S. (Matthijs) Berends	54f8258f8c	Catalogue of Life, replaces ITIS	2019-02-18 02:33:37 +01:00
dr. M.S. (Matthijs) Berends	efb2af9e3a	benchmarks plots	2019-02-14 10:23:51 +01:00
dr. M.S. (Matthijs) Berends	ae44b185e6	fix freq length calculation	2019-02-13 17:14:59 +01:00
dr. M.S. (Matthijs) Berends	30ff770c93	freq update	2019-02-12 15:38:31 +01:00
dr. M.S. (Matthijs) Berends	76ed26d27e	resistance predict update	2019-02-11 10:27:10 +01:00
dr. M.S. (Matthijs) Berends	c56b179857	as.rsi warning, site update	2019-02-09 22:16:24 +01:00
dr. M.S. (Matthijs) Berends	ed30312048	mo codes for WHONET	2019-02-08 16:06:54 +01:00
dr. M.S. (Matthijs) Berends	3d3366faf7	is.rsi.eligible update	2019-02-04 18:04:29 +01:00
dr. M.S. (Matthijs) Berends	587e00b7be	is.rsi.eligible update	2019-02-04 12:24:07 +01:00
dr. M.S. (Matthijs) Berends	cd07d65734	freq and website update	2019-02-01 16:55:55 +01:00
dr. M.S. (Matthijs) Berends	d75ec01f92	website update	2019-01-30 19:52:58 +01:00
dr. M.S. (Matthijs) Berends	0b3dc0231f	freq fix	2019-01-30 16:00:55 +01:00
dr. M.S. (Matthijs) Berends	e6489483c7	website update	2019-01-29 20:38:45 +01:00
dr. M.S. (Matthijs) Berends	3efb54d016	freq update	2019-01-29 20:20:09 +01:00
dr. M.S. (Matthijs) Berends	6aae206320	WHONET/EARS-Net support	2019-01-29 00:06:50 +01:00
dr. M.S. (Matthijs) Berends	f6336fdd89	quasiquotation for freq()	2019-01-28 11:20:32 +01:00
dr. M.S. (Matthijs) Berends	63e343d555	deps fix	2019-01-27 20:49:11 +01:00
dr. M.S. (Matthijs) Berends	e76961a66b	less deps	2019-01-27 19:30:40 +01:00
dr. M.S. (Matthijs) Berends	a2d3ea280a	text updates	2019-01-27 13:55:23 +01:00
dr. M.S. (Matthijs) Berends	18b75356a9	re-add atc_ddd and atc_groups	2019-01-27 13:33:43 +01:00
dr. M.S. (Matthijs) Berends	6ec940bc75	atc_ functions	2019-01-27 10:53:59 +01:00
dr. M.S. (Matthijs) Berends	b39055c018	deprecated fix	2019-01-27 00:33:58 +01:00
dr. M.S. (Matthijs) Berends	f836722269	atc_ functions	2019-01-26 23:22:56 +01:00
dr. M.S. (Matthijs) Berends	5493e1f05d	website update	2019-01-25 20:47:57 +01:00
dr. M.S. (Matthijs) Berends	f4ff98b470	WHO update, antibiotics update	2019-01-25 13:18:41 +01:00
dr. M.S. (Matthijs) Berends	9529d097b6	as.mo	2019-01-21 21:24:40 +01:00
dr. M.S. (Matthijs) Berends	46dcc7e2e8	set_mo_source	2019-01-21 15:53:01 +01:00
dr. M.S. (Matthijs) Berends	c6c3088e9f	select() fix for freq	2019-01-17 12:08:04 +01:00
dr. M.S. (Matthijs) Berends	1ee710c861	resistance predict	2019-01-15 16:51:49 +01:00
dr. M.S. (Matthijs) Berends	8db87a15e9	fixes	2019-01-15 16:38:54 +01:00
dr. M.S. (Matthijs) Berends	046d195064	resistance predict	2019-01-15 12:45:24 +01:00
dr. M.S. (Matthijs) Berends	cda7087722	website update	2019-01-12 19:31:30 +01:00
dr. M.S. (Matthijs) Berends	3661df7365	direct warning if failing as.mo	2019-01-12 16:45:20 +01:00
dr. M.S. (Matthijs) Berends	5aad26035c	edited g.test	2019-01-12 11:06:58 +01:00
dr. M.S. (Matthijs) Berends	641d866db2	guess_ab_col, benchmarks	2019-01-11 20:37:23 +01:00
dr. M.S. (Matthijs) Berends	193a2d2863	EUCAST update, as.mo bugfix for empty vlaues	2019-01-08 16:23:45 +01:00
dr. M.S. (Matthijs) Berends	bc15f660d6	guess_ab()	2019-01-06 20:23:49 +01:00
dr. M.S. (Matthijs) Berends	0205b6178d	guess_mo deprecation	2019-01-06 16:40:55 +01:00
dr. M.S. (Matthijs) Berends	2c798547bf	language	2019-01-05 21:40:04 +01:00
dr. M.S. (Matthijs) Berends	6652f7d82b	fix warnings	2019-01-04 09:49:42 +01:00
dr. M.S. (Matthijs) Berends	80ea555663	guess_ab	2019-01-03 23:56:19 +01:00
dr. M.S. (Matthijs) Berends	6b2d464f8c	big website update, licence txt update	2019-01-02 23:24:07 +01:00
dr. M.S. (Matthijs) Berends	68baf058cd	website update	2018-12-31 10:35:26 +01:00
dr. M.S. (Matthijs) Berends	2e4d703338	eucast rules fix, 1st isolate fix, website update	2018-12-31 01:48:53 +01:00
dr. M.S. (Matthijs) Berends	92a32b62a7	new website, freq updates	2018-12-29 22:24:19 +01:00
dr. M.S. (Matthijs) Berends	0b8084871d	dplyr 0.8.0 support, fixes #7	2018-12-22 22:39:34 +01:00
dr. M.S. (Matthijs) Berends	b937662a97	limits for scale_y_percent - Licence update	2018-12-16 22:45:12 +01:00
dr. M.S. (Matthijs) Berends	bd5f46d734	age_groups fix	2018-12-16 09:50:14 +01:00
dr. M.S. (Matthijs) Berends	2018d5b477	age and age_groups	2018-12-15 22:40:07 +01:00
dr. M.S. (Matthijs) Berends	ecebc60bfd	C stack error fix	2018-12-14 11:44:15 +01:00
dr. M.S. (Matthijs) Berends	857f565db0	reorganised notes and warnings	2018-12-14 10:52:20 +01:00
dr. M.S. (Matthijs) Berends	dec4947103	freq header fix for NAs	2018-12-14 10:08:51 +01:00
dr. M.S. (Matthijs) Berends	e4737d3add	date transformation fix for tibbles	2018-12-14 09:31:53 +01:00
dr. M.S. (Matthijs) Berends	7e5fe75a17	small text fixes	2018-12-14 07:48:12 +01:00
dr. M.S. (Matthijs) Berends	81af7be36e	note about portions	2018-12-14 07:23:25 +01:00
dr. M.S. (Matthijs) Berends	01a6d56334	add kingdom to mo_taxonomy	2018-12-10 21:47:25 +01:00
dr. M.S. (Matthijs) Berends	5ab7eb07bc	keyab automatic	2018-12-10 15:14:29 +01:00
dr. M.S. (Matthijs) Berends	9478ab71be	freq - decimals	2018-12-10 10:13:40 +01:00
dr. M.S. (Matthijs) Berends	8e8a9cd190	AI improvements	2018-12-07 12:04:55 +01:00
dr. M.S. (Matthijs) Berends	74a7f4453b	small CI fix	2018-12-06 16:07:06 +01:00
dr. M.S. (Matthijs) Berends	60fe98bbbd	better as.mo handling	2018-12-06 14:36:39 +01:00
dr. M.S. (Matthijs) Berends	31e977937d	fix for as.mo and freq	2018-11-30 12:05:59 +01:00
dr. M.S. (Matthijs) Berends	9ddf6dc530	support A. species for as.mo, cleanup	2018-11-24 20:25:09 +01:00
dr. M.S. (Matthijs) Berends	63ba4b2980	small error in freq	2018-11-19 13:06:07 +01:00
dr. M.S. (Matthijs) Berends	a8132922af	unit test read.4d, unselecting freq cols	2018-11-19 13:00:22 +01:00
dr. M.S. (Matthijs) Berends	83c7da85ab	unit tests	2018-11-16 22:28:55 +01:00
dr. M.S. (Matthijs) Berends	d22b7f00da	unit tests	2018-11-16 22:22:42 +01:00
dr. M.S. (Matthijs) Berends	373e0cb32f	unit test fail	2018-11-16 21:57:55 +01:00
dr. M.S. (Matthijs) Berends	4fcc2b409a	MDRO update	2018-11-16 20:50:50 +01:00
dr. M.S. (Matthijs) Berends	fab64e6728	read.4D improvements	2018-11-15 12:42:35 +01:00
dr. M.S. (Matthijs) Berends	5cb8f3cf72	get_locale improvement	2018-11-12 15:07:43 +01:00
dr. M.S. (Matthijs) Berends	6b0f4ffbd4	new kingdom	2018-11-09 13:11:54 +01:00
dr. M.S. (Matthijs) Berends	9be5e0318b	freq: fix na.rm in groups	2018-11-08 16:10:03 +01:00
dr. M.S. (Matthijs) Berends	84e08f516a	grouping var for freq	2018-11-06 16:41:59 +01:00
dr. M.S. (Matthijs) Berends	ee664f2a4c	small fix	2018-11-05 15:36:07 +01:00
dr. M.S. (Matthijs) Berends	d15bb2ab3f	read_4D	2018-11-05 15:30:49 +01:00
dr. M.S. (Matthijs) Berends	d07e9b904e	new function get_locale	2018-11-05 13:20:32 +01:00
dr. M.S. (Matthijs) Berends	d0bc05e5b1	speed improvement is.rsi.eligible	2018-11-02 14:55:29 +01:00
dr. M.S. (Matthijs) Berends	40a159e78d	more unit tests	2018-11-02 10:27:57 +01:00
dr. M.S. (Matthijs) Berends	e601fd259a	test syntax fix	2018-11-01 20:50:10 +01:00
dr. M.S. (Matthijs) Berends	5476fecc73	eucast update	2018-11-01 20:23:33 +01:00
dr. M.S. (Matthijs) Berends	f7687557c9	eucast updates	2018-11-01 17:06:08 +01:00
dr. M.S. (Matthijs) Berends	9cd4ab928a	speed improvement as.mo, freq title	2018-10-31 12:10:49 +01:00
dr. M.S. (Matthijs) Berends	1bf8dc2983	as.mo speedup: assigned to namespace	2018-10-29 17:26:17 +01:00
dr. M.S. (Matthijs) Berends	707aa20a37	fixes	2018-10-23 14:59:36 +02:00
dr. M.S. (Matthijs) Berends	7997de6a6d	mdro and 1st isolate improvements	2018-10-23 11:15:05 +02:00
dr. M.S. (Matthijs) Berends	299c5bea43	na freq, removed factors	2018-10-23 09:42:26 +02:00
dr. M.S. (Matthijs) Berends	9c56257da1	freq - print title bold in markdown	2018-10-22 13:06:54 +02:00
dr. M.S. (Matthijs) Berends	c2a93b46db	breaks param, tidyr dep change, freq markdown	2018-10-22 12:32:59 +02:00
dr. M.S. (Matthijs) Berends	ec15b82fd6	param header for freq	2018-10-19 21:52:08 +02:00
dr. M.S. (Matthijs) Berends	86b03577a7	fix for as.mo, added also_single_tested	2018-10-19 13:53:31 +02:00
dr. M.S. (Matthijs) Berends	032c0d51ef	better verbose in EUCAST	2018-10-19 00:57:10 +02:00
dr. M.S. (Matthijs) Berends	b464dd524a	new verbose	2018-10-19 00:17:03 +02:00
dr. M.S. (Matthijs) Berends	0ef91be3ac	param rules for EUCAST	2018-10-18 12:10:10 +02:00
dr. M.S. (Matthijs) Berends	693f64bdbf	new EUCAST rules: clinical breakpoints	2018-10-17 17:32:34 +02:00
dr. M.S. (Matthijs) Berends	d5a41de711	parameter combine_IR	2018-10-16 09:59:31 +02:00
dr. M.S. (Matthijs) Berends	5b5b95a47b	count_all and some fixes	2018-10-12 16:35:18 +02:00
dr. M.S. (Matthijs) Berends	e7d937d36e	update NEWS	2018-10-10 10:50:19 +02:00
dr. M.S. (Matthijs) Berends	67521394f6	more unit tests	2018-10-09 15:41:44 +02:00
dr. M.S. (Matthijs) Berends	95c9fdc552	CRAN fixes for release 0.4.0 ... https://cran.r-project.org/web/checks/check_results_AMR.html	2018-10-09 13:53:33 +02:00
dr. M.S. (Matthijs) Berends	6d761436f7	benchmarks on readme and speed improvement for direct mo codes	2018-10-01 16:26:02 +02:00
dr. M.S. (Matthijs) Berends	ed17db0263	renamed year columns to ref	2018-10-01 14:44:40 +02:00
dr. M.S. (Matthijs) Berends	3119a221e5	authors from ITIS, diff for freq	2018-10-01 11:39:43 +02:00
dr. M.S. (Matthijs) Berends	92c9cc2608	diff for freq, fix for mo_shortname	2018-09-29 21:54:32 +02:00
dr. M.S. (Matthijs) Berends	a6aa9e95fb	completed old taxonomic names	2018-09-28 20:13:13 +02:00
dr. M.S. (Matthijs) Berends	768fe17324	removed clipboard functions as it violated CRAN policies	2018-09-28 16:05:18 +02:00
dr. M.S. (Matthijs) Berends	2b0080995e	speed improvement for as.mo, more old taxonomic names	2018-09-27 23:23:48 +02:00
dr. M.S. (Matthijs) Berends	450992baea	new: 1680 old taxonomic names	2018-09-25 16:44:40 +02:00
dr. M.S. (Matthijs) Berends	9c566585b0	first inclusion of ITIS data	2018-09-24 23:33:29 +02:00
dr. M.S. (Matthijs) Berends	5d80cef338	added taxonomic data from ITIS	2018-09-17 20:53:32 +02:00
dr. M.S. (Matthijs) Berends	7680e4edd8	add shortest and longest to freq for characters	2018-09-17 09:42:09 +02:00
dr. M.S. (Matthijs) Berends	db14781593	add labels_rsi_count	2018-09-16 22:11:17 +02:00
dr. M.S. (Matthijs) Berends	b792a2754e	added prevalence column and alterted as.mo algorith to use it, added ab_name as alias	2018-09-16 16:43:29 +02:00
dr. M.S. (Matthijs) Berends	b0ca49d68d	small improvement for is.rsi.eligible, more unit tests	2018-09-14 11:54:01 +02:00
dr. M.S. (Matthijs) Berends	cf5711fb0b	algorithm improvement	2018-09-14 10:31:21 +02:00
dr. M.S. (Matthijs) Berends	d049ec9e69	ggplot2_rsi fix	2018-09-13 14:48:34 +02:00
dr. M.S. (Matthijs) Berends	cb0d74a4f0	support for French and Italian, added quote to freq	2018-09-10 15:45:25 +02:00
dr. M.S. (Matthijs) Berends	b83e6a9380	algoritm improvement, removed all Catabacter except for C. hongkongensis	2018-09-10 11:40:54 +02:00
dr. M.S. (Matthijs) Berends	4816419f0c	AI improvements for microorganisms	2018-09-09 12:11:44 +02:00
dr. M.S. (Matthijs) Berends	936198372e	translate CoNS	2018-09-08 16:24:12 +02:00
dr. M.S. (Matthijs) Berends	26f5be0033	support for portuguese, language determination based on system	2018-09-08 16:06:47 +02:00
dr. M.S. (Matthijs) Berends	c5073f2fd1	small fix for microorganisms data set	2018-09-06 16:50:03 +02:00
dr. M.S. (Matthijs) Berends	de36b0be23	fix for empty values in mo_property	2018-09-05 12:21:27 +02:00
dr. M.S. (Matthijs) Berends	e39a9a8b05	added mo_shortname	2018-09-05 10:51:46 +02:00
dr. M.S. (Matthijs) Berends	790bd1622d	added vanA to vanE positive Enterococci	2018-09-05 09:49:19 +02:00
dr. M.S. (Matthijs) Berends	b388e3fee7	Support for German and Spanish microorganism properties, cleanup	2018-09-04 11:33:30 +02:00
dr. M.S. (Matthijs) Berends	e25dd0e282	fix for joins	2018-09-03 10:04:49 +02:00
dr. M.S. (Matthijs) Berends	75fe4d401f	new MOs, cleanup	2018-09-01 21:19:46 +02:00
dr. M.S. (Matthijs) Berends	5965d3c794	replaced bactid by mo	2018-08-31 13:36:19 +02:00
dr. M.S. (Matthijs) Berends	98ff131680	support for older versions of ggplot2	2018-08-29 16:39:28 +02:00
dr. M.S. (Matthijs) Berends	d654444c8e	re added nrow	2018-08-29 16:35:32 +02:00
dr. M.S. (Matthijs) Berends	d9e68e0a50	ggplot_rsi example update, more unit tests	2018-08-29 16:25:57 +02:00
dr. M.S. (Matthijs) Berends	029157b3be	163 new trade names, added ab_tradenames	2018-08-29 12:27:37 +02:00
dr. M.S. (Matthijs) Berends	972fc4f6c7	ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid	2018-08-28 13:51:13 +02:00
dr. M.S. (Matthijs) Berends	2acdb1981c	atc and bactid functions, readme update	2018-08-25 22:01:14 +02:00
dr. M.S. (Matthijs) Berends	baaf4cc3e1	few extra tests	2018-08-24 14:18:38 +02:00
dr. M.S. (Matthijs) Berends	a100d07da6	removed ratio, better rsi_calc, update for freq	2018-08-24 11:08:20 +02:00
dr. M.S. (Matthijs) Berends	febd0ca885	geom_rsi - any parameter	2018-08-23 21:27:15 +02:00
dr. M.S. (Matthijs) Berends	da5379c881	quasiquotation, alpha for geom_rsi	2018-08-23 00:40:36 +02:00
dr. M.S. (Matthijs) Berends	3e87c8f409	count_* functions	2018-08-22 00:02:26 +02:00
dr. M.S. (Matthijs) Berends	59ce1eb1b1	ggplot_rsi improvements	2018-08-13 16:42:37 +02:00
dr. M.S. (Matthijs) Berends	dba06c3295	abname improvement, small fixes	2018-08-13 11:00:53 +02:00
dr. M.S. (Matthijs) Berends	ce2cdb9309	support groups for portion_df, update README	2018-08-12 22:34:03 +02:00
dr. M.S. (Matthijs) Berends	e5d32cafe0	new unit tests for ggplot, small fixes	2018-08-12 17:44:06 +02:00
dr. M.S. (Matthijs) Berends	1ba7d883fe	new ggplot enhancement	2018-08-11 21:30:00 +02:00
dr. M.S. (Matthijs) Berends	53fa198e35	new portion functions	2018-08-10 15:01:05 +02:00
dr. M.S. (Matthijs) Berends	ae2433a020	rsi family for resistance analysis	2018-08-03 14:49:29 +02:00
dr. M.S. (Matthijs) Berends	227121af3d	add Dialister to microorganisms	2018-08-03 11:46:06 +02:00
dr. M.S. (Matthijs) Berends	db5a0d32a5	typos of Becker algorithm	2018-08-03 10:58:48 +02:00
dr. M.S. (Matthijs) Berends	bd9bcfef78	thesis advisors	2018-08-03 09:59:39 +02:00
dr. M.S. (Matthijs) Berends	6262315527	Becker classification ... Lancefield classification Added Lancefield groups to `microorganisms` data set	2018-08-02 13:15:45 +02:00
dr. M.S. (Matthijs) Berends	edd2dd09dc	rsi for freq	2018-08-01 22:37:28 +02:00
dr. M.S. (Matthijs) Berends	d8f70a74de	clipboard error	2018-08-01 10:32:24 +02:00
dr. M.S. (Matthijs) Berends	a59d0661f7	check CMD error	2018-08-01 09:45:11 +02:00
dr. M.S. (Matthijs) Berends	7c667eb732	emph guess_bactid	2018-08-01 08:03:31 +02:00
dr. M.S. (Matthijs) Berends	211e3bae14	remove reshape2 dependency	2018-07-30 01:18:40 +02:00
dr. M.S. (Matthijs) Berends	510e8f22aa	more unit tests	2018-07-30 00:57:49 +02:00
dr. M.S. (Matthijs) Berends	d0a115d995	bactid speed improvement	2018-07-30 00:14:06 +02:00
dr. M.S. (Matthijs) Berends	826694323b	new functions R, RI, SI, S	2018-07-29 22:14:51 +02:00
dr. M.S. (Matthijs) Berends	8421e3f005	more mic classes	2018-07-28 10:48:27 +02:00
dr. M.S. (Matthijs) Berends	feab1cad6b	small fixes	2018-07-28 09:34:03 +02:00
dr. M.S. (Matthijs) Berends	498e88b5cf	improvement for forecasting resistance	2018-07-26 16:30:42 +02:00
dr. M.S. (Matthijs) Berends	d9e204031d	update to septic_patients, speed improvements	2018-07-25 14:17:04 +02:00
dr. M.S. (Matthijs) Berends	03a3cb397b	clipboard update	2018-07-23 15:09:19 +02:00