Commit Graph

384 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends d2e8249edd (v0.8.0.9004) added MDR guideline by Magiorakos et al. 2019-10-26 21:56:41 +02:00
dr. M.S. (Matthijs) Berends 00cdb498a0 (v0.7.1.9102) lintr 2019-10-11 17:21:02 +02:00
dr. M.S. (Matthijs) Berends c8f6b97847 (v0.7.1.9100) bug_drug speed, MIC levels 2019-10-08 22:21:33 +02:00
dr. M.S. (Matthijs) Berends f479dfce60 (v0.7.1.9097) mdro() examples fix 2019-10-07 14:57:27 +02:00
dr. M.S. (Matthijs) Berends 4e9c4c1b4e (v0.7.1.9096) German guideline for mdro() 2019-10-07 14:32:06 +02:00
dr. M.S. (Matthijs) Berends 8bc4081b03 (v0.7.1.9092) as.ab() improvements 2019-10-04 15:36:12 +02:00
dr. M.S. (Matthijs) Berends edb599ae0b (v0.7.1.9091) percentage from clean pkg 2019-09-30 16:45:36 +02:00
dr. M.S. (Matthijs) Berends 99d0fe76dd (v0.7.1.9088) bug_drug improvement 2019-09-25 15:43:22 +02:00
dr. M.S. (Matthijs) Berends a8c6b8f9c4 (v0.7.1.9082) CI fix 2019-09-23 14:37:24 +02:00
dr. M.S. (Matthijs) Berends 64d9829030 (v0.7.1.9081) bug_drug fixes 2019-09-23 13:53:50 +02:00
dr. M.S. (Matthijs) Berends 66d405ff57 (v0.7.1.9080) new LIS codes 2019-09-22 17:19:59 +02:00
dr. M.S. (Matthijs) Berends 40e6b3e8f6 (v0.7.1.9077) mo codes fix 2019-09-20 14:18:29 +02:00
dr. M.S. (Matthijs) Berends 3596adb295 (v0.7.1.9076) mo codes 2019-09-20 12:33:05 +02:00
dr. M.S. (Matthijs) Berends e2aa4f996b (v0.7.1.9075) new microorganism codes 2019-09-18 15:46:09 +02:00
dr. M.S. (Matthijs) Berends 398c5bdc4f (v0.7.1.9073) as.mo() self-learning algorithm 2019-09-15 22:57:30 +02:00
dr. M.S. (Matthijs) Berends cd178ee569 (v0.7.1.9072) key_antibiotics() for foreign systems 2019-09-12 15:08:53 +02:00
dr. M.S. (Matthijs) Berends b5d2a08401 (v0.7.1.9071) p_symbol() 2019-09-03 09:47:39 +02:00
dr. M.S. (Matthijs) Berends 06b6266366 (v0.7.1.9070) na.rm for age(), age_groups() 2019-09-02 15:17:41 +02:00
dr. M.S. (Matthijs) Berends e2b78fa428 (v0.7.1.9066) bug-drug fix 2019-08-27 23:00:00 +02:00
dr. M.S. (Matthijs) Berends 248638ad91 (v0.7.1.9065) bug-drug fix 2019-08-27 22:41:09 +02:00
dr. M.S. (Matthijs) Berends f3276592b7 (v0.7.1.9064) bug-drug fix 2019-08-27 19:15:04 +02:00
dr. M.S. (Matthijs) Berends 93be16484b (v0.7.1.9063) septic_patients -> example_isolates 2019-08-27 16:45:42 +02:00
dr. M.S. (Matthijs) Berends 7a6fce4eb8 (v0.7.1.9062) mo/ab assignment improvements 2019-08-26 16:02:03 +02:00
dr. M.S. (Matthijs) Berends e46cb0399f (v0.7.1.9059) bug_drug_combinations 2019-08-25 22:53:22 +02:00
dr. M.S. (Matthijs) Berends 920212e815 (v0.7.1.9056) mo and ab subsetting 2019-08-14 14:57:06 +02:00
dr. M.S. (Matthijs) Berends 7108454ba5 (v0.7.1.9055) algorithm improvements 2019-08-13 16:15:08 +02:00
dr. M.S. (Matthijs) Berends bd252a2984 (v0.7.1.9036) preserve ab/mo classes in subsetting 2019-08-12 14:48:09 +02:00
dr. M.S. (Matthijs) Berends 1d423cca89 (v0.7.1.9035) cephalosporins and unit tests 2019-08-11 19:07:26 +02:00
dr. M.S. (Matthijs) Berends 3f5828e74a (v0.7.1.9034) mo.codes fix for Dracunculus spp. 2019-08-09 23:45:26 +02:00
dr. M.S. (Matthijs) Berends 6598c5615d (v0.7.1.9033) 5000 new fungi 2019-08-09 23:22:10 +02:00
dr. M.S. (Matthijs) Berends 6a349bf757 (v0.7.1.9032) eucast_rules() improvements 2019-08-09 14:28:46 +02:00
dr. M.S. (Matthijs) Berends 1ce4b72dd2 (v0.7.1.9031) include_unknown for first_isolate() 2019-08-08 22:39:42 +02:00
dr. M.S. (Matthijs) Berends bfa92eb166 (v0.7.1.9028) predict update 2019-08-07 15:58:32 +02:00
dr. M.S. (Matthijs) Berends 90c874025a (v0.7.1.9027) tibble printing 2019-08-07 15:37:39 +02:00
dr. M.S. (Matthijs) Berends 3a1f960f89 (v0.7.1.9024) eucast_rules() fix, new MOs 2019-08-06 14:39:22 +02:00
dr. M.S. (Matthijs) Berends d6ab3896a1 (v0.7.1.9021) CI fix for resistance_predict 2019-08-04 10:48:41 +02:00
dr. M.S. (Matthijs) Berends 2a62c3d62a (v0.7.1.9018) deps 2019-07-30 13:12:40 +02:00
dr. M.S. (Matthijs) Berends ec0ca20dee (v0.7.1.9017) deps 2019-07-29 21:20:26 +02:00
dr. M.S. (Matthijs) Berends b7e2d7b9b8 (v0.7.1.9016) deps 2019-07-29 17:34:57 +02:00
dr. M.S. (Matthijs) Berends 240f03a672 (v0.7.1.9015) Remove freq() 2019-07-29 13:33:48 +02:00
dr. M.S. (Matthijs) Berends b452de2fe4 (v0.7.1.9010) eucast informative text in verbose mode 2019-07-09 13:36:03 +02:00
dr. M.S. (Matthijs) Berends b15d59cf03 (v0.7.1.9009) note for WHOCC 2019-07-09 11:22:46 +02:00
dr. M.S. (Matthijs) Berends c57ad26c5b (v0.7.1.9007) mdro update 2019-07-04 15:26:07 +02:00
dr. M.S. (Matthijs) Berends 4ff20af123 (v0.7.1.9006) new rsi calculations, atc class removal 2019-07-02 16:48:52 +02:00
dr. M.S. (Matthijs) Berends 156d550895 (v0.7.1.9005) new rsi calculations, atc class removal 2019-07-01 14:03:15 +02:00
dr. M.S. (Matthijs) Berends 65c6702b21 (v0.7.1.9004) atc class removal 2019-06-27 11:57:45 +02:00
dr. M.S. (Matthijs) Berends c9156c004a (v0.7.0.9013) mo_synonym fix 2019-06-22 14:49:12 +02:00
dr. M.S. (Matthijs) Berends 9c39c35f86 (v0.7.0.9010) mo_synonyms, plot/barplot fixes 2019-06-16 21:42:40 +02:00
dr. M.S. (Matthijs) Berends 254745061c (v0.7.0.9008) T. vaginalis, rsi_df 2019-06-13 14:28:46 +02:00
dr. M.S. (Matthijs) Berends 8f674e19bb (v0.7.0.9005) ab algorithm update 2019-06-11 14:18:25 +02:00
dr. M.S. (Matthijs) Berends ec48f1d83b (v0.7.0.9003) scale fix 2019-06-08 23:50:06 +02:00
dr. M.S. (Matthijs) Berends 270aa0dd33 v0.7.0 2019-06-03 17:45:22 +02:00
dr. M.S. (Matthijs) Berends 702da574c0 website update 2019-06-02 19:50:22 +02:00
dr. M.S. (Matthijs) Berends bd73988f15 (v0.6.1.9053) prerelease fixes 2019-06-02 19:23:19 +02:00
dr. M.S. (Matthijs) Berends 2667fff8a7 (v0.6.1.9050) support staged install 2019-06-01 20:40:49 +02:00
dr. M.S. (Matthijs) Berends a665612cb8 (v0.6.1.9049) data creation fix 2019-05-31 21:20:16 +02:00
dr. M.S. (Matthijs) Berends 4ed27c7e7a (v0.6.1.9046) ggplot fix 2019-05-31 20:25:57 +02:00
dr. M.S. (Matthijs) Berends f03f71eced (v0.6.1.9045) age test fix 2019-05-31 14:40:15 +02:00
dr. M.S. (Matthijs) Berends 493ae2ba0c (v0.6.1.9044) first_isolate fix for species 2019-05-31 14:25:11 +02:00
dr. M.S. (Matthijs) Berends 1f8ee3ec3e (v0.6.1.9043) age doc fix 2019-05-30 08:51:38 +02:00
dr. M.S. (Matthijs) Berends 8b5e2b030b added boxplot for (grouped) freq() 2019-05-29 19:56:17 +02:00
dr. M.S. (Matthijs) Berends 62e6f41961 website update 2019-05-29 00:36:48 +02:00
dr. M.S. (Matthijs) Berends 7e0e171512 website update 2019-05-23 19:39:07 +02:00
dr. M.S. (Matthijs) Berends bbf8b611e3 doc fix 2019-05-23 17:35:58 +02:00
dr. M.S. (Matthijs) Berends 60983a1640 added mdr_tb() 2019-05-23 16:58:59 +02:00
dr. M.S. (Matthijs) Berends 4ca00e1868 speed improvement eucast_rules(), support more old MO codes 2019-05-20 12:00:18 +02:00
dr. M.S. (Matthijs) Berends b0033dae1b website update 2019-05-17 20:22:04 +02:00
dr. M.S. (Matthijs) Berends 5eda991c47 ab_info fix 2019-05-16 22:07:31 +02:00
dr. M.S. (Matthijs) Berends 4c3cf85a65 ab_info, other bug fixes 2019-05-16 21:20:00 +02:00
dr. M.S. (Matthijs) Berends f6bf54b37d documentation fix 2019-05-13 20:16:51 +02:00
dr. M.S. (Matthijs) Berends 2ea0c93e44 documentation fix 2019-05-13 16:35:48 +02:00
dr. M.S. (Matthijs) Berends cc403169c6 first isolate missing dates fix 2019-05-13 14:56:23 +02:00
dr. M.S. (Matthijs) Berends 0dc0715dc6 CI tests 2019-05-13 12:21:57 +02:00
dr. M.S. (Matthijs) Berends 38a4421450 CI tests 2019-05-13 10:10:16 +02:00
dr. M.S. (Matthijs) Berends fcc77164e9 mdro fix 2019-05-11 23:30:10 +02:00
dr. M.S. (Matthijs) Berends 68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00
dr. M.S. (Matthijs) Berends 461eec9bac cfta streptococci, codecov.yml 2019-04-09 14:59:17 +02:00
dr. M.S. (Matthijs) Berends cffb7787d8 cfta streptococci 2019-04-09 10:34:40 +02:00
dr. M.S. (Matthijs) Berends 30b559827c documentation update 2019-04-07 22:40:02 +02:00
dr. M.S. (Matthijs) Berends 51fdc5d6cc self-learning off 2019-04-06 09:38:23 +02:00
dr. M.S. (Matthijs) Berends fbc9191b13 new EUCAST rules algorithm 2019-04-05 18:47:39 +02:00
dr. M.S. (Matthijs) Berends b25f2d6213 v0.6.1 2019-03-28 21:33:28 +01:00
dr. M.S. (Matthijs) Berends 8a1d384d9c ci fixes 2019-03-26 15:34:04 +01:00
dr. M.S. (Matthijs) Berends 29f444543d added Becker 2019 2019-03-26 14:24:03 +01:00
dr. M.S. (Matthijs) Berends c6a12266e7 DSMZ data 2019-03-18 14:29:41 +01:00
dr. M.S. (Matthijs) Berends e18a1f1f17 as.mo improvement 2019-03-15 17:36:42 +01:00
dr. M.S. (Matthijs) Berends fdffc2791b memory for as.mo() 2019-03-15 13:57:25 +01:00
dr. M.S. (Matthijs) Berends 504a042fba uncertainty levels, new WHONET codes 2019-03-12 12:19:27 +01:00
dr. M.S. (Matthijs) Berends b319b89750 WHONET fix 2019-03-09 08:21:00 +01:00
dr. M.S. (Matthijs) Berends 0c0c6e289b small as.mo fix 2019-03-06 14:39:02 +01:00
dr. M.S. (Matthijs) Berends 5c7a061a5d filter_ab_class fix 2019-03-06 09:32:48 +01:00
dr. M.S. (Matthijs) Berends 74e0ae21fd con WHONET, filter ab class 2019-03-05 22:47:42 +01:00
dr. M.S. (Matthijs) Berends e835525cf6 unknown codes, rsi fix 2019-03-02 22:47:04 +01:00
dr. M.S. (Matthijs) Berends c5efb272fd mo_source improvement 2019-03-01 09:34:04 +01:00
dr. M.S. (Matthijs) Berends 2565b60024 rlang dependency, new fungi 2019-02-28 13:56:28 +01:00
dr. M.S. (Matthijs) Berends 54162522bd age_groups fix 2019-02-27 11:36:12 +01:00
dr. M.S. (Matthijs) Berends f9ded23023 as.mo improvement 2019-02-26 12:33:26 +01:00
dr. M.S. (Matthijs) Berends c506d2893b as.mo improvements 2019-02-25 15:52:32 +01:00
dr. M.S. (Matthijs) Berends 0ec76cfa98 as.mo improvement 2019-02-25 10:42:57 +01:00
dr. M.S. (Matthijs) Berends 1a6314769b as.mo improvement 2019-02-23 16:02:31 +01:00
dr. M.S. (Matthijs) Berends 41ad7a22c8 mo_rank mo_url, added Tremellales 2019-02-22 22:12:10 +01:00
dr. M.S. (Matthijs) Berends 68a9a35ed6 algorithm update 2019-02-21 18:55:52 +01:00
dr. M.S. (Matthijs) Berends c6e57ca456 website update 2019-02-20 14:18:11 +01:00
dr. M.S. (Matthijs) Berends 13120f465f website update 2019-02-20 13:57:23 +01:00
dr. M.S. (Matthijs) Berends 8dc027309e website update 2019-02-20 10:38:24 +01:00
dr. M.S. (Matthijs) Berends fb1fc3686c Catalogue of life 2019-02-20 00:04:48 +01:00
dr. M.S. (Matthijs) Berends 54f8258f8c Catalogue of Life, replaces ITIS 2019-02-18 02:33:37 +01:00
dr. M.S. (Matthijs) Berends efb2af9e3a benchmarks plots 2019-02-14 10:23:51 +01:00
dr. M.S. (Matthijs) Berends 76ed26d27e resistance predict update 2019-02-11 10:27:10 +01:00
dr. M.S. (Matthijs) Berends c56b179857 as.rsi warning, site update 2019-02-09 22:16:24 +01:00
dr. M.S. (Matthijs) Berends ed30312048 mo codes for WHONET 2019-02-08 16:06:54 +01:00
dr. M.S. (Matthijs) Berends 3d3366faf7 is.rsi.eligible update 2019-02-04 18:04:29 +01:00
dr. M.S. (Matthijs) Berends 587e00b7be is.rsi.eligible update 2019-02-04 12:24:07 +01:00
dr. M.S. (Matthijs) Berends 0b3dc0231f freq fix 2019-01-30 16:00:55 +01:00
dr. M.S. (Matthijs) Berends 3efb54d016 freq update 2019-01-29 20:20:09 +01:00
dr. M.S. (Matthijs) Berends 6aae206320 WHONET/EARS-Net support 2019-01-29 00:06:50 +01:00
dr. M.S. (Matthijs) Berends f6336fdd89 quasiquotation for freq() 2019-01-28 11:20:32 +01:00
dr. M.S. (Matthijs) Berends e76961a66b less deps 2019-01-27 19:30:40 +01:00
dr. M.S. (Matthijs) Berends a2d3ea280a text updates 2019-01-27 13:55:23 +01:00
dr. M.S. (Matthijs) Berends 18b75356a9 re-add atc_ddd and atc_groups 2019-01-27 13:33:43 +01:00
dr. M.S. (Matthijs) Berends 6ec940bc75 atc_ functions 2019-01-27 10:53:59 +01:00
dr. M.S. (Matthijs) Berends b39055c018 deprecated fix 2019-01-27 00:33:58 +01:00
dr. M.S. (Matthijs) Berends f836722269 atc_ functions 2019-01-26 23:22:56 +01:00
dr. M.S. (Matthijs) Berends f4ff98b470 WHO update, antibiotics update 2019-01-25 13:18:41 +01:00
dr. M.S. (Matthijs) Berends 46dcc7e2e8 set_mo_source 2019-01-21 15:53:01 +01:00
dr. M.S. (Matthijs) Berends 8db87a15e9 fixes 2019-01-15 16:38:54 +01:00
dr. M.S. (Matthijs) Berends 046d195064 resistance predict 2019-01-15 12:45:24 +01:00
dr. M.S. (Matthijs) Berends cda7087722 website update 2019-01-12 19:31:30 +01:00
dr. M.S. (Matthijs) Berends 5aad26035c edited g.test 2019-01-12 11:06:58 +01:00
dr. M.S. (Matthijs) Berends 641d866db2 guess_ab_col, benchmarks 2019-01-11 20:37:23 +01:00
dr. M.S. (Matthijs) Berends 193a2d2863 EUCAST update, as.mo bugfix for empty vlaues 2019-01-08 16:23:45 +01:00
dr. M.S. (Matthijs) Berends bc15f660d6 guess_ab() 2019-01-06 20:23:49 +01:00
dr. M.S. (Matthijs) Berends 2c798547bf language 2019-01-05 21:40:04 +01:00
dr. M.S. (Matthijs) Berends 6652f7d82b fix warnings 2019-01-04 09:49:42 +01:00
dr. M.S. (Matthijs) Berends 80ea555663 guess_ab 2019-01-03 23:56:19 +01:00
dr. M.S. (Matthijs) Berends 6b2d464f8c big website update, licence txt update 2019-01-02 23:24:07 +01:00
dr. M.S. (Matthijs) Berends 68baf058cd website update 2018-12-31 10:35:26 +01:00
dr. M.S. (Matthijs) Berends 92a32b62a7 new website, freq updates 2018-12-29 22:24:19 +01:00
dr. M.S. (Matthijs) Berends 0b8084871d dplyr 0.8.0 support, fixes #7 2018-12-22 22:39:34 +01:00
dr. M.S. (Matthijs) Berends b937662a97 limits for scale_y_percent - Licence update 2018-12-16 22:45:12 +01:00
dr. M.S. (Matthijs) Berends 1ed0cc9bfd age_groups fix 2018-12-16 11:40:54 +01:00
dr. M.S. (Matthijs) Berends 2018d5b477 age and age_groups 2018-12-15 22:40:07 +01:00
dr. M.S. (Matthijs) Berends 7e5fe75a17 small text fixes 2018-12-14 07:48:12 +01:00
dr. M.S. (Matthijs) Berends 81af7be36e note about portions 2018-12-14 07:23:25 +01:00
dr. M.S. (Matthijs) Berends 01a6d56334 add kingdom to mo_taxonomy 2018-12-10 21:47:25 +01:00
dr. M.S. (Matthijs) Berends 5ab7eb07bc keyab automatic 2018-12-10 15:14:29 +01:00
dr. M.S. (Matthijs) Berends 9478ab71be freq - decimals 2018-12-10 10:13:40 +01:00
dr. M.S. (Matthijs) Berends 8e8a9cd190 AI improvements 2018-12-07 12:04:55 +01:00
dr. M.S. (Matthijs) Berends 60fe98bbbd better as.mo handling 2018-12-06 14:36:39 +01:00
dr. M.S. (Matthijs) Berends 9ddf6dc530 support A. species for as.mo, cleanup 2018-11-24 20:25:09 +01:00