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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 10:46:12 +01:00
Commit Graph

971 Commits

Author SHA1 Message Date
bc4f8515e2 new Norwegian link 2024-03-03 23:24:57 +01:00
f2d245b0cb update navbar colours 2024-03-03 19:07:09 +01:00
b303662ec6 fix veterinary for R<4 2024-02-24 19:26:35 +01:00
35963ca3dc vctrs fix 2024-02-24 18:51:37 +01:00
4aa5413641 fix unit test 2024-02-24 18:14:50 +01:00
7be4dabbc0 support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
Emil Rossing
74ea6c8c60
Added support for 'html' in italicize_taxonomy() (#134) 2024-02-13 13:47:07 +01:00
83e92fd88c docu fix 2023-12-04 08:19:02 +01:00
7059568581 fix scale functions 2023-12-03 16:51:54 +01:00
c7461766ce Remove RSI from package, add extra MIC scale functions 2023-12-03 11:34:48 +01:00
6f417d0ef2 add scale_x_mic() 2023-12-03 01:06:00 +01:00
4c11a7bd9c v2.1.1 2023-10-22 15:51:27 +02:00
ca72a646d0 scientific notation for MICs 2023-10-20 15:45:00 +02:00
7cda9e575b prepare for CRAN 2023-10-20 14:51:48 +02:00
7dc96794be fix rounding MICs on R-devel 2023-07-20 08:24:27 +02:00
7a4628b73f Added C. freundii complex and Y. pseudotuberculosis complex 2023-07-14 10:49:06 +02:00
fd480d1a9a console hyperlink fix 2023-07-14 09:50:13 +02:00
eff164ecb1 indicate unique identifiers 2023-07-12 21:26:32 +02:00
ea2a4652e9 mouse-hover fixes 2023-07-12 15:27:43 +01:00
e1b4f99f4f breakpoints fixes 2023-07-12 15:20:04 +01:00
0c46f61260 MO group fixes 2023-07-12 15:04:48 +01:00
7cd9ca274c add strep groups to ABCG 2023-07-12 11:41:25 +01:00
66eeeb4b88 cleanup 2023-07-11 14:29:40 +02:00
8df1cd8d97 interpretation fixes 2023-07-11 09:50:45 +02:00
dab20c09f6 unit test 2023-07-10 18:30:26 +02:00
1b499bf012 fixes 2023-07-10 17:02:28 +02:00
a4e2e25e3f reftbl in plots, speedup for as.sir() and mo_validate 2023-07-10 16:43:46 +02:00
70c601ca11 breakpoints UTI interpretation fix 2023-07-10 13:41:52 +02:00
3829311dd3 random() fix 2023-07-08 21:00:49 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
2d97cca6d9 fix reference_df endless loop 2023-06-26 13:52:02 +02:00
1d9ee39cc7 fix for mo codes 2023-06-22 15:24:18 +02:00
Dr. Matthijs Berends
f065945d7b
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
e1966503ee unit testing R4.3 2023-05-26 20:37:00 +02:00
766db4e21f as.mo fix 2023-05-26 19:20:21 +02:00
c6135d2082 updated microorganism codes 2023-05-26 16:10:01 +02:00
0bcf55d3b6 improve as.mo() 2023-05-24 15:55:53 +02:00
3018fb87a9 icu_exclude in first_isolate(), fixes #110 2023-05-17 22:12:10 +02:00
91fa73dedf add oxygen tolerance 2023-05-11 21:56:27 +02:00
bf08d136a0 fix coercing NA to custom codes, fixes #107 2023-05-08 13:04:18 +02:00
9148a2dcf4 fix mo_rank() for 'unknown' MOs 2023-04-20 15:20:41 +02:00
cabffb22fd anaerobic codes 2023-04-17 11:26:19 +02:00
1a02d302d4 Fix translatable strings 2023-04-15 09:32:13 +02:00
ed70f95380 Fix clinical breakpoints 2023-04-14 23:14:34 +02:00
147f9112e9 Fix some WHONET codes 2023-04-14 11:12:26 +02:00
549790c2a6 website 2023-03-20 21:59:50 +01:00
c28cfa3a77 fix documentation 2023-03-16 08:55:37 +01:00
dd7cc86485 help page %like% 2023-03-14 19:49:50 +01:00
80cfc503c2 check for 2.0 2023-03-12 13:02:37 +01:00