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6ff5448192
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(v1.6.0.9001) support Inf for episodes
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2021-04-12 12:35:13 +02:00 |
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7a3139f7cc
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(v1.6.0.9000) custom EUCAST rules
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2021-04-07 08:37:42 +02:00 |
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551f99dc8f
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v1.6.0
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2021-03-15 07:23:21 +01:00 |
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4e0a9533ad
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(v1.5.0.9041) SNOMED update
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2021-03-11 21:42:30 +01:00 |
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8d6ceb6a15
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(v1.5.0.9040) removal of isolate_identifier
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2021-03-08 09:44:17 +01:00 |
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a7c9b4c295
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(v1.5.0.9039) handle first isolates for missing antibiograms
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2021-03-08 02:38:32 +01:00 |
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450bbe5fb7
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(v1.5.0.9034) unit test fix
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2021-03-07 21:16:45 +01:00 |
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850c123de7
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(v1.5.0.9032) All group generics for MICs
|
2021-03-07 13:52:39 +01:00 |
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91dd755cac
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(v1.5.0.9031) math processing of MICs
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2021-03-05 15:36:39 +01:00 |
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0e0e3c4ffa
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(v1.5.0.9029) added missing families and orders
|
2021-03-05 01:31:46 +01:00 |
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ddf88345f1
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(v1.5.0.9028) Updated taxonomy until March 2021
|
2021-03-04 23:28:32 +01:00 |
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41f94cde97
|
(v1.5.0.9027) website update
|
2021-02-26 12:11:29 +01:00 |
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1737d56ae4
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(v1.5.0.9026) vignette update, support for GISA
|
2021-02-25 12:31:12 +01:00 |
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a673407904
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(v1.5.0.9025) big plot and ggplot generics update
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2021-02-25 10:33:08 +01:00 |
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5ef8cb41a7
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(v1.5.0.9021) improve speed of %like%
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2021-02-21 20:15:09 +01:00 |
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601ea7377c
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(v1.5.0.9019) use functions without loading AMR pkg
|
2021-02-17 10:58:13 +01:00 |
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4a84894f79
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(v1.5.0.9016) only_rsi_columns update, documentation
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2021-02-08 14:18:42 +01:00 |
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8fda473e49
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(v1.5.0.9015) unit test fix, grouped first isolates
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2021-02-04 16:48:16 +01:00 |
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2eca8c3f01
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(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
|
2021-02-02 23:57:35 +01:00 |
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20d638c193
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(v1.5.0.9013) updated tibble printing colours
|
2021-01-28 16:09:30 +01:00 |
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331c1f6508
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(v1.5.0.9012) ampc_cephalosporin_resistance for I
|
2021-01-25 21:58:00 +01:00 |
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24eb4453db
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(v1.5.0.9011) small dosage update
|
2021-01-24 23:27:11 +01:00 |
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286eaa9699
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(v1.5.0.9010) MDRO vignette update, get_episode for < day
|
2021-01-24 14:48:56 +01:00 |
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1a88caa119
|
(v1.5.0.9009) unit test fixes
|
2021-01-22 10:55:07 +01:00 |
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1ba44776a1
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(v1.5.0.9008) Internal data sets to pkg, speed for auto col determination
|
2021-01-22 10:20:41 +01:00 |
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4eab095306
|
(v1.5.0.9006) major documentation update
|
2021-01-18 16:57:56 +01:00 |
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e699de955c
|
(v1.5.0.9004) custom MDRO guideline
|
2021-01-17 00:26:48 +01:00 |
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6745f3fb17
|
(v1.5.0.9002) doc update
|
2021-01-14 15:51:41 +01:00 |
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bc00470dca
|
(v1.5.0.9001) more informative argument errors
|
2021-01-14 14:41:44 +01:00 |
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d014955ce0
|
(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
|
2021-01-12 22:08:04 +01:00 |
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3b84b8be75
|
v1.5.0
|
2021-01-06 11:16:17 +01:00 |
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c9de74c81a
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(v1.4.0.9059) ab class selector fix
|
2021-01-04 12:29:25 +01:00 |
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d3f007bf65
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(v1.4.0.9053) unit test old R versions
|
2020-12-29 21:23:01 +01:00 |
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526f8afb08
|
(v1.4.0.9052) replaced all sapply's with type-safe vapply's
|
2020-12-28 22:24:33 +01:00 |
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ccf13dd6c0
|
(v1.4.0.9051) ab class
|
2020-12-27 23:19:41 +01:00 |
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afc325c314
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(v1.4.0.9050) ab selectors base R
|
2020-12-27 20:32:40 +01:00 |
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ed198916bf
|
(v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants
|
2020-12-27 14:23:11 +01:00 |
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acbd0cf7ca
|
(v1.4.0.9046) get_episode
|
2020-12-27 00:07:00 +01:00 |
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df37584189
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(v1.4.0.9044) mo tibble printing, mo_shortname() fix
|
2020-12-24 23:29:10 +01:00 |
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128ebcfd62
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(v1.4.0.9043) documentation update
|
2020-12-22 00:51:17 +01:00 |
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ee70883246
|
(v1.4.0.9042) auto dark theme website
|
2020-12-21 22:46:29 +01:00 |
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81af41da3a
|
(v1.4.0.9041) updates based on review
|
2020-12-17 16:22:25 +01:00 |
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1faa816090
|
(v1.4.0.9040) LA-MRSA / CA-MRSA
|
2020-12-16 16:18:53 +01:00 |
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c8bcecf232
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(v1.4.0.9037) random_* functions
|
2020-12-12 23:17:29 +01:00 |
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c9fc7e8a45
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(v1.4.0.9034) MIC printing update
|
2020-12-09 09:40:50 +01:00 |
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2145f1d1ba
|
(v1.4.0.9033) documentation update
|
2020-12-08 12:37:25 +01:00 |
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1bdb136b3a
|
(v1.4.0.9032) auto-data guessing for functions
|
2020-12-07 16:06:42 +01:00 |
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e03b3c96d3
|
(v1.4.0.9030) as.mo() fix for known lab codes
|
2020-12-03 16:59:04 +01:00 |
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4c114ff4b4
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(v1.4.0.9029) grey background for backticks, like readr pkg
|
2020-12-01 16:59:57 +01:00 |
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7b42b15c90
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(v1.4.0.9026) docu update
|
2020-11-24 11:47:54 +01:00 |
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b045b571a6
|
(v1.4.0.9025) is_new_episode()
|
2020-11-23 21:50:27 +01:00 |
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363218da7e
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(v1.4.0.9024) is_new_episode()
|
2020-11-17 16:57:41 +01:00 |
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deefce9520
|
(v1.4.0.9021) more robust class setting
|
2020-11-16 16:57:55 +01:00 |
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05fb213a7c
|
(v1.4.0.9020) mo_is_intrinsic_resistant
|
2020-11-16 11:03:24 +01:00 |
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9666b78ea7
|
(v1.4.0.9019) documentation update
|
2020-11-12 11:07:23 +01:00 |
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f2edac3b67
|
(v1.4.0.9018) reference_data in as.rsi()
|
2020-11-11 18:54:03 +01:00 |
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01d9522434
|
(v1.4.0.9017) stringsAsFactors definitions
|
2020-11-11 16:49:27 +01:00 |
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dd5a0319ef
|
(v1.4.0.9014) bugfix
|
2020-11-09 15:18:36 +01:00 |
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d3b1d33210
|
(v1.4.0.9013) is_gram_negative/positive update
|
2020-11-09 13:07:02 +01:00 |
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423879c034
|
(v1.4.0.9012) reference_df fix
|
2020-11-05 01:11:49 +01:00 |
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760d69a3e0
|
(v1.4.0.9008) like variations
|
2020-10-26 12:23:03 +01:00 |
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9109b9dd62
|
(v1.4.0.9005) bugfix
|
2020-10-21 13:07:23 +02:00 |
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ade9f8bafd
|
(v1.4.0.9004) bugfix
|
2020-10-21 11:50:43 +02:00 |
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2ef7dfc8a3
|
(v1.4.0.9003) CoNS update
|
2020-10-20 21:00:57 +02:00 |
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4e9ccb4435
|
(v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening
|
2020-10-19 17:09:19 +02:00 |
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28e77680c5
|
(v1.4.0) matching score update
|
2020-10-08 11:16:03 +02:00 |
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c04dc852cf
|
(v1.3.0.9039) lifecycle updates, added excess kurtosis
|
2020-10-04 21:02:16 +02:00 |
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baf510183c
|
(v1.3.0.9038) prefinal 1.4.0
|
2020-10-04 19:26:43 +02:00 |
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ac1c78c793
|
(v1.3.0.9036) documentation fix
|
2020-09-30 10:24:53 +02:00 |
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4e0374af29
|
(v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup
|
2020-09-29 23:35:46 +02:00 |
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36ec8b0d81
|
(v1.3.0.9033) skimr fix
|
2020-09-28 11:00:59 +02:00 |
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22f6ceb3e4
|
(v1.3.0.9031) matching score update
|
2020-09-26 16:51:17 +02:00 |
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050a9a04fb
|
(v1.3.0.9030) matching score update
|
2020-09-26 16:26:01 +02:00 |
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9667c2994f
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(v1.3.0.9029) eucast rules fix, unique()
|
2020-09-25 14:44:50 +02:00 |
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1d982a82b4
|
(v1.3.0.9028) eucast fix
|
2020-09-24 12:38:13 +02:00 |
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c19095a3d5
|
(v1.3.0.9026) eucast expert rules 3.2
|
2020-09-24 00:30:11 +02:00 |
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d049cce69b
|
(v1.3.0.9023) optimalisation
|
2020-09-19 11:54:01 +02:00 |
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4e40e42011
|
(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix
|
2020-09-18 16:05:53 +02:00 |
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ab60f613aa
|
(v1.3.0.9020) fix for uncertainty in as.mo()
|
2020-09-14 19:41:48 +02:00 |
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354c606d6a
|
(v1.3.0.9019) small fix
|
2020-09-14 14:08:07 +02:00 |
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7b6dd676f7
|
(v1.3.0.9018) language corrections
|
2020-09-14 12:21:23 +02:00 |
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3ff871afeb
|
(v1.3.0.9016) mo_uncertainties() overhaul
|
2020-09-12 08:49:01 +02:00 |
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c4b87fe241
|
(v1.3.0.9014) as.mo() speed improvement
|
2020-09-03 12:31:48 +02:00 |
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81af0b001c
|
(v1.3.0.9009) documentation update
|
2020-08-26 16:13:40 +02:00 |
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9b8db57c65
|
(v1.3.0.9008) also tibble printing for ab
|
2020-08-26 15:34:12 +02:00 |
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5e45fdcf2a
|
(v1.3.0.9007) tibble printing
|
2020-08-26 11:33:54 +02:00 |
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c8c8bb4e3a
|
(v1.3.0.9006) website update
|
2020-08-21 11:40:13 +02:00 |
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dab017a50f
|
(v1.3.0.9004) data sets, as.disk() improvement
|
2020-08-16 21:38:42 +02:00 |
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e73f0e211c
|
(v1.3.0.9003) as.rsi() speed improvement
|
2020-08-15 12:54:47 +02:00 |
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08d62bb5d5
|
(v1.3.0.9002) intrinsic_resistant data set
|
2020-08-14 13:36:10 +02:00 |
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7d16bec21f
|
(v1.3.0.9001) website update
|
2020-08-10 12:46:03 +02:00 |
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0d9602a6a9
|
(v1.3.0.9000) support across() in as.rsi()
|
2020-08-10 11:44:58 +02:00 |
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c5f7294381
|
(v1.3.0) skip more CRAN tests
|
2020-07-31 10:50:08 +02:00 |
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c8edcb7439
|
(v1.3.0) small fixes
|
2020-07-30 15:15:52 +02:00 |
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ea4e5e5b81
|
(v1.3.0) v1.3.0
|
2020-07-29 13:48:50 +02:00 |
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de0f7b8950
|
(v1.2.0.9040) conserve_capped_values for as.rsi()
|
2020-07-29 12:47:58 +02:00 |
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e7def0aa4c
|
(v1.2.0.9039) conserve_capped_values for as.rsi()
|
2020-07-29 11:46:59 +02:00 |
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453f7f210b
|
(v1.2.0.9038) CLSI 2019 fix
|
2020-07-29 10:33:47 +02:00 |
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1b65d76cfb
|
(v1.2.0.9037) survey on website
|
2020-07-28 18:39:57 +02:00 |
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09fba38ea6
|
(v1.2.0.9035) as.mo() speed improvement
|
2020-07-22 10:24:23 +02:00 |
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c0cf7ab02b
|
(v1.2.0.9033) speed improvement mdro(), filter_ab_class()
|
2020-07-12 11:43:31 +02:00 |
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76fc8e1b14
|
(v1.2.0.9026) move to github
|
2020-07-08 14:48:06 +02:00 |
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152ac5bcad
|
(v1.2.0.9023) ab_from_text() improvement
|
2020-07-02 21:12:52 +02:00 |
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298e67a45b
|
(v1.2.0.9022) as.ab() improvement
|
2020-07-01 16:21:36 +02:00 |
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329a0eb0b6
|
(v1.2.0.9019) ab_from_text() dose and administration
|
2020-07-01 11:07:01 +02:00 |
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4f6f056077
|
(v1.2.0.9017) ab_from_text() improvement
|
2020-06-26 12:31:27 +02:00 |
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344bbd57f4
|
(v1.2.0.9014) ab_from_text()
|
2020-06-25 17:34:50 +02:00 |
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8a66e475d7
|
(v1.2.0.9013) unit test fix
|
2020-06-22 13:18:40 +02:00 |
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93a158aebd
|
(v1.2.0.9011) mo_domain(), improved error handling
|
2020-06-22 11:18:40 +02:00 |
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e88d7853f5
|
(v1.2.0.9010) documentation fix
|
2020-06-17 21:35:10 +02:00 |
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ac12392da3
|
(v1.2.0.9008) ab_class improvement
|
2020-06-17 15:14:37 +02:00 |
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c4d7412f36
|
(v1.2.0.9007) Tidyverse selections
|
2020-06-17 01:39:30 +02:00 |
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8b692ecfcf
|
(v1.2.0.9004) rsi_df() fix for groups
|
2020-06-09 16:18:03 +02:00 |
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5dc4c96b7d
|
(v1.2.0.9001) filter_ab_class() update
|
2020-06-03 11:48:00 +02:00 |
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d9a4b0bcaf
|
(v1.1.0.9021) 1st isolates update
|
2020-05-28 10:51:56 +02:00 |
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86d44054f0
|
(v1.1.0.9020) updated taxonomy
|
2020-05-27 16:37:49 +02:00 |
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ae1969b941
|
(v1.1.0.9019) mo_source fix
|
2020-05-25 01:01:14 +02:00 |
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f5ff2e6634
|
(v1.1.0.9018) as.ab() update, added ab_url()
|
2020-05-22 20:29:55 +02:00 |
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e467cc103e
|
(v1.1.0.9017) as.ab() update, added ab_url()
|
2020-05-22 20:15:19 +02:00 |
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743f9a5364
|
(v1.1.0.9015) new default eucast_rules
|
2020-05-20 12:00:17 +02:00 |
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5216d2b520
|
(v1.1.0.9014) lose dependencies
|
2020-05-19 14:16:45 +02:00 |
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19703eb5d3
|
(v1.1.0.9012) lose dependencies
|
2020-05-19 12:08:49 +02:00 |
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bf0402a653
|
(v1.1.0.9009) lose dependencies
|
2020-05-18 10:30:53 +02:00 |
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f68d71a5e0
|
(v1.1.0.9007) lose dependencies
|
2020-05-16 21:40:50 +02:00 |
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df2456b91f
|
(v1.1.0.9005) lose dependencies
|
2020-05-16 20:08:21 +02:00 |
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7f3da74b17
|
(v1.1.0.9004) lose dependencies
|
2020-05-16 13:05:47 +02:00 |
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5bdece1f9d
|
(v1.1.0.9000) CI fix
|
2020-04-30 09:05:03 +02:00 |
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b040185269
|
(v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI
|
2020-04-29 14:33:44 +02:00 |
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c2ffbd9f95
|
(v1.0.1.9009) prepare for next release
|
2020-04-15 11:30:28 +02:00 |
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4be54d608c
|
(v1.0.1.9008) RIVM abbreviations for drugs
|
2020-04-14 20:38:09 +02:00 |
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7a6f819232
|
(v1.0.1.9006) added generic CLSI rules
|
2020-04-14 14:12:31 +02:00 |
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d1cb7d3b6f
|
(v1.0.1.9005) as.mo() improvements
|
2020-04-13 21:09:56 +02:00 |
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219cff403f
|
(v1.0.1.9004) Support dplyr 1.0.0
|
2020-03-14 14:05:43 +01:00 |
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77656a676c
|
(v1.0.1.9002) PCA unit tests
|
2020-03-08 11:18:59 +01:00 |
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9fc858f208
|
(v1.0.1.9001) PCA unit tests
|
2020-03-08 09:12:11 +01:00 |
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fa0d9c58d9
|
(v1.0.1.9000) first PCA implementation
|
2020-03-07 21:48:21 +01:00 |
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0d5e78b2cf
|
(v1.0.0.9007) small doc fix
|
2020-02-22 17:03:47 +01:00 |
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ea32e9916a
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(v1.0.0.9005) info printing only in interactive mode
|
2020-02-21 21:13:38 +01:00 |
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47fe8b7820
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(v1.0.0.9004) add example_isolaten_unclean
|
2020-02-21 16:05:19 +01:00 |
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bb3728f023
|
(v1.0.0.9003) prepare for short update
|
2020-02-21 13:13:34 +01:00 |
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bdb26f624f
|
(v1.0.0.9001) add uti to as.rsi()
|
2020-02-20 17:21:01 +01:00 |
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c6184a0fb8
|
(v0.9.0.9029) add uti to as.rsi()
|
2020-02-20 13:19:23 +01:00 |
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c8981a563e
|
(v0.9.0.9027) documentation fix
|
2020-02-17 15:07:25 +01:00 |
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5e2b294351
|
(v0.9.0.9026) update documentation
|
2020-02-17 14:38:01 +01:00 |
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11f00f8a0a
|
(v0.9.0.9025) update as.rsi documentation
|
2020-02-16 22:43:56 +01:00 |
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c7a93af3d0
|
(v0.9.0.9024) global vars fix
|
2020-02-14 20:03:43 +01:00 |
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9b8b02960e
|
(v0.9.0.9023) EUCAST 2020 guidelines
|
2020-02-14 19:54:13 +01:00 |
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c7a76ba713
|
(v0.9.0.9020) as.mo() improvement
|
2020-02-09 22:04:29 +01:00 |
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4e1c16c5a5
|
(v0.9.0.9019) website update
|
2020-02-01 15:09:36 +01:00 |
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|
f152ab9a48
|
(v0.9.0.9018) Remove mo_history
|
2020-01-31 23:27:38 +01:00 |
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1b80773c22
|
(v0.9.0.9017) documentation fix
|
2020-01-27 19:30:26 +01:00 |
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|
a13c62e6e8
|
(v0.9.0.9016) Support SNOMED codes
|
2020-01-27 19:14:23 +01:00 |
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9a3891efe4
|
(v0.9.0.9014) Machine reading guidelines
|
2020-01-27 11:05:39 +01:00 |
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423d1d3c41
|
(v0.9.0.9013) Support for LOINC codes
|
2020-01-26 20:38:54 +01:00 |
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449d9bde35
|
(v0.9.0.9012) Support for LOINC codes
|
2020-01-26 20:20:00 +01:00 |
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64f5ceef03
|
(v0.9.0.9009) antibiotics data set update
|
2020-01-08 11:30:33 +01:00 |
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ced1a7b7fa
|
(v0.9.0.9008) Happy new year! Add lifecycles
|
2020-01-05 17:22:09 +01:00 |
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ba3ce77f02
|
(v0.9.0.9005) as.mo for G. species
|
2019-12-21 10:56:06 +01:00 |
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56ce9bf665
|
(v0.9.0) website fixes
|
2019-11-30 12:01:50 +01:00 |
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bb2ed55842
|
(v0.9.0) v0.9.0
|
2019-11-29 19:43:23 +01:00 |
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9feef53bde
|
(v0.8.0.9037) complete documentation rewrite
|
2019-11-28 23:00:37 +01:00 |
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c5f00f4a9f
|
(v0.8.0.9036) complete documentation rewrite
|
2019-11-28 22:32:17 +01:00 |
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7c28b392b1
|
(v0.8.0.9035) add more mo codes
|
2019-11-24 22:48:56 +01:00 |
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e53cc4990c
|
(v0.8.0.9034) add cid to antivirals
|
2019-11-23 12:39:57 +01:00 |
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267320f15f
|
(v0.8.0.9033) antivirals data set, cleanup
|
2019-11-18 12:10:47 +01:00 |
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09e2730b53
|
(v0.8.0.9031) as.mo() improvements
|
2019-11-15 15:25:03 +01:00 |
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248b45da71
|
(v0.8.0.9030) depend on tidyr >= 1.0.0
|
2019-11-11 10:46:39 +01:00 |
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d22834c5b8
|
(v0.8.0.9029) cleanup
|
2019-11-10 15:50:18 +01:00 |
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54b6322056
|
(v0.8.0.9028) examples fix
|
2019-11-10 13:17:20 +01:00 |
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59ededa8dc
|
(v0.8.0.9027) adding susceptibility() and resistance()
|
2019-11-10 12:16:56 +01:00 |
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e2d05cb1b0
|
(v0.8.0.9017) keywords update
|
2019-11-06 14:43:23 +01:00 |
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2560aa1a53
|
(v0.8.0.9013) unit test update
|
2019-11-05 21:52:58 +01:00 |
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0bb531f3e0
|
(v0.8.0.9009) unit test
|
2019-11-03 22:41:29 +01:00 |
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29e448883d
|
(v0.8.0.9008) new verbose mode for MDROs
|
2019-11-03 22:24:42 +01:00 |
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09c4b04cd0
|
(v0.8.0.9007) Enterobacterales order
|
2019-10-30 23:02:50 +01:00 |
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7ff2ad8188
|
(v0.8.0.9006) small typos
|
2019-10-27 00:31:59 +02:00 |
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d2e8249edd
|
(v0.8.0.9004) added MDR guideline by Magiorakos et al.
|
2019-10-26 21:56:41 +02:00 |
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00cdb498a0
|
(v0.7.1.9102) lintr
|
2019-10-11 17:21:02 +02:00 |
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c8f6b97847
|
(v0.7.1.9100) bug_drug speed, MIC levels
|
2019-10-08 22:21:33 +02:00 |
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f479dfce60
|
(v0.7.1.9097) mdro() examples fix
|
2019-10-07 14:57:27 +02:00 |
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4e9c4c1b4e
|
(v0.7.1.9096) German guideline for mdro()
|
2019-10-07 14:32:06 +02:00 |
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|
8bc4081b03
|
(v0.7.1.9092) as.ab() improvements
|
2019-10-04 15:36:12 +02:00 |
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|
edb599ae0b
|
(v0.7.1.9091) percentage from clean pkg
|
2019-09-30 16:45:36 +02:00 |
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99d0fe76dd
|
(v0.7.1.9088) bug_drug improvement
|
2019-09-25 15:43:22 +02:00 |
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a8c6b8f9c4
|
(v0.7.1.9082) CI fix
|
2019-09-23 14:37:24 +02:00 |
|
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|
64d9829030
|
(v0.7.1.9081) bug_drug fixes
|
2019-09-23 13:53:50 +02:00 |
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|
66d405ff57
|
(v0.7.1.9080) new LIS codes
|
2019-09-22 17:19:59 +02:00 |
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|
40e6b3e8f6
|
(v0.7.1.9077) mo codes fix
|
2019-09-20 14:18:29 +02:00 |
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|
3596adb295
|
(v0.7.1.9076) mo codes
|
2019-09-20 12:33:05 +02:00 |
|
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|
e2aa4f996b
|
(v0.7.1.9075) new microorganism codes
|
2019-09-18 15:46:09 +02:00 |
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|
398c5bdc4f
|
(v0.7.1.9073) as.mo() self-learning algorithm
|
2019-09-15 22:57:30 +02:00 |
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|
cd178ee569
|
(v0.7.1.9072) key_antibiotics() for foreign systems
|
2019-09-12 15:08:53 +02:00 |
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|
b5d2a08401
|
(v0.7.1.9071) p_symbol()
|
2019-09-03 09:47:39 +02:00 |
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|
06b6266366
|
(v0.7.1.9070) na.rm for age(), age_groups()
|
2019-09-02 15:17:41 +02:00 |
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|
e2b78fa428
|
(v0.7.1.9066) bug-drug fix
|
2019-08-27 23:00:00 +02:00 |
|
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|
248638ad91
|
(v0.7.1.9065) bug-drug fix
|
2019-08-27 22:41:09 +02:00 |
|
|
|
f3276592b7
|
(v0.7.1.9064) bug-drug fix
|
2019-08-27 19:15:04 +02:00 |
|
|
|
93be16484b
|
(v0.7.1.9063) septic_patients -> example_isolates
|
2019-08-27 16:45:42 +02:00 |
|
|
|
7a6fce4eb8
|
(v0.7.1.9062) mo/ab assignment improvements
|
2019-08-26 16:02:03 +02:00 |
|
|
|
e46cb0399f
|
(v0.7.1.9059) bug_drug_combinations
|
2019-08-25 22:53:22 +02:00 |
|
|
|
920212e815
|
(v0.7.1.9056) mo and ab subsetting
|
2019-08-14 14:57:06 +02:00 |
|
|
|
7108454ba5
|
(v0.7.1.9055) algorithm improvements
|
2019-08-13 16:15:08 +02:00 |
|
|
|
bd252a2984
|
(v0.7.1.9036) preserve ab/mo classes in subsetting
|
2019-08-12 14:48:09 +02:00 |
|
|
|
1d423cca89
|
(v0.7.1.9035) cephalosporins and unit tests
|
2019-08-11 19:07:26 +02:00 |
|
|
|
3f5828e74a
|
(v0.7.1.9034) mo.codes fix for Dracunculus spp.
|
2019-08-09 23:45:26 +02:00 |
|
|
|
6598c5615d
|
(v0.7.1.9033) 5000 new fungi
|
2019-08-09 23:22:10 +02:00 |
|
|
|
6a349bf757
|
(v0.7.1.9032) eucast_rules() improvements
|
2019-08-09 14:28:46 +02:00 |
|
|
|
1ce4b72dd2
|
(v0.7.1.9031) include_unknown for first_isolate()
|
2019-08-08 22:39:42 +02:00 |
|
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|
bfa92eb166
|
(v0.7.1.9028) predict update
|
2019-08-07 15:58:32 +02:00 |
|
|
|
90c874025a
|
(v0.7.1.9027) tibble printing
|
2019-08-07 15:37:39 +02:00 |
|
|
|
3a1f960f89
|
(v0.7.1.9024) eucast_rules() fix, new MOs
|
2019-08-06 14:39:22 +02:00 |
|
|
|
d6ab3896a1
|
(v0.7.1.9021) CI fix for resistance_predict
|
2019-08-04 10:48:41 +02:00 |
|
|
|
2a62c3d62a
|
(v0.7.1.9018) deps
|
2019-07-30 13:12:40 +02:00 |
|
|
|
ec0ca20dee
|
(v0.7.1.9017) deps
|
2019-07-29 21:20:26 +02:00 |
|
|
|
b7e2d7b9b8
|
(v0.7.1.9016) deps
|
2019-07-29 17:34:57 +02:00 |
|
|
|
240f03a672
|
(v0.7.1.9015) Remove freq()
|
2019-07-29 13:33:48 +02:00 |
|
|
|
b452de2fe4
|
(v0.7.1.9010) eucast informative text in verbose mode
|
2019-07-09 13:36:03 +02:00 |
|
|
|
b15d59cf03
|
(v0.7.1.9009) note for WHOCC
|
2019-07-09 11:22:46 +02:00 |
|
|
|
c57ad26c5b
|
(v0.7.1.9007) mdro update
|
2019-07-04 15:26:07 +02:00 |
|
|
|
4ff20af123
|
(v0.7.1.9006) new rsi calculations, atc class removal
|
2019-07-02 16:48:52 +02:00 |
|
|
|
156d550895
|
(v0.7.1.9005) new rsi calculations, atc class removal
|
2019-07-01 14:03:15 +02:00 |
|
|
|
65c6702b21
|
(v0.7.1.9004) atc class removal
|
2019-06-27 11:57:45 +02:00 |
|
|
|
c9156c004a
|
(v0.7.0.9013) mo_synonym fix
|
2019-06-22 14:49:12 +02:00 |
|
|
|
9c39c35f86
|
(v0.7.0.9010) mo_synonyms, plot/barplot fixes
|
2019-06-16 21:42:40 +02:00 |
|
|
|
254745061c
|
(v0.7.0.9008) T. vaginalis, rsi_df
|
2019-06-13 14:28:46 +02:00 |
|
|
|
8f674e19bb
|
(v0.7.0.9005) ab algorithm update
|
2019-06-11 14:18:25 +02:00 |
|
|
|
ec48f1d83b
|
(v0.7.0.9003) scale fix
|
2019-06-08 23:50:06 +02:00 |
|
|
|
270aa0dd33
|
v0.7.0
|
2019-06-03 17:45:22 +02:00 |
|
|
|
702da574c0
|
website update
|
2019-06-02 19:50:22 +02:00 |
|
|
|
bd73988f15
|
(v0.6.1.9053) prerelease fixes
|
2019-06-02 19:23:19 +02:00 |
|
|
|
2667fff8a7
|
(v0.6.1.9050) support staged install
|
2019-06-01 20:40:49 +02:00 |
|
|
|
a665612cb8
|
(v0.6.1.9049) data creation fix
|
2019-05-31 21:20:16 +02:00 |
|
|
|
4ed27c7e7a
|
(v0.6.1.9046) ggplot fix
|
2019-05-31 20:25:57 +02:00 |
|
|
|
f03f71eced
|
(v0.6.1.9045) age test fix
|
2019-05-31 14:40:15 +02:00 |
|
|
|
493ae2ba0c
|
(v0.6.1.9044) first_isolate fix for species
|
2019-05-31 14:25:11 +02:00 |
|
|
|
1f8ee3ec3e
|
(v0.6.1.9043) age doc fix
|
2019-05-30 08:51:38 +02:00 |
|
|
|
8b5e2b030b
|
added boxplot for (grouped) freq()
|
2019-05-29 19:56:17 +02:00 |
|
|
|
62e6f41961
|
website update
|
2019-05-29 00:36:48 +02:00 |
|
|
|
7e0e171512
|
website update
|
2019-05-23 19:39:07 +02:00 |
|
|
|
bbf8b611e3
|
doc fix
|
2019-05-23 17:35:58 +02:00 |
|
|
|
60983a1640
|
added mdr_tb()
|
2019-05-23 16:58:59 +02:00 |
|
|
|
4ca00e1868
|
speed improvement eucast_rules(), support more old MO codes
|
2019-05-20 12:00:18 +02:00 |
|
|
|
b0033dae1b
|
website update
|
2019-05-17 20:22:04 +02:00 |
|
|
|
5eda991c47
|
ab_info fix
|
2019-05-16 22:07:31 +02:00 |
|
|
|
4c3cf85a65
|
ab_info, other bug fixes
|
2019-05-16 21:20:00 +02:00 |
|
|
|
f6bf54b37d
|
documentation fix
|
2019-05-13 20:16:51 +02:00 |
|
|
|
2ea0c93e44
|
documentation fix
|
2019-05-13 16:35:48 +02:00 |
|
|
|
cc403169c6
|
first isolate missing dates fix
|
2019-05-13 14:56:23 +02:00 |
|
|
|
0dc0715dc6
|
CI tests
|
2019-05-13 12:21:57 +02:00 |
|
|
|
38a4421450
|
CI tests
|
2019-05-13 10:10:16 +02:00 |
|
|
|
fcc77164e9
|
mdro fix
|
2019-05-11 23:30:10 +02:00 |
|
|
|
68cc7ef0d0
|
new antibiotics
|
2019-05-10 16:44:59 +02:00 |
|
|
|
461eec9bac
|
cfta streptococci, codecov.yml
|
2019-04-09 14:59:17 +02:00 |
|
|
|
cffb7787d8
|
cfta streptococci
|
2019-04-09 10:34:40 +02:00 |
|
|
|
30b559827c
|
documentation update
|
2019-04-07 22:40:02 +02:00 |
|
|
|
51fdc5d6cc
|
self-learning off
|
2019-04-06 09:38:23 +02:00 |
|
|
|
fbc9191b13
|
new EUCAST rules algorithm
|
2019-04-05 18:47:39 +02:00 |
|
|
|
b25f2d6213
|
v0.6.1
|
2019-03-28 21:33:28 +01:00 |
|
|
|
8a1d384d9c
|
ci fixes
|
2019-03-26 15:34:04 +01:00 |
|
|
|
29f444543d
|
added Becker 2019
|
2019-03-26 14:24:03 +01:00 |
|
|
|
c6a12266e7
|
DSMZ data
|
2019-03-18 14:29:41 +01:00 |
|
|
|
e18a1f1f17
|
as.mo improvement
|
2019-03-15 17:36:42 +01:00 |
|
|
|
fdffc2791b
|
memory for as.mo()
|
2019-03-15 13:57:25 +01:00 |
|
|
|
504a042fba
|
uncertainty levels, new WHONET codes
|
2019-03-12 12:19:27 +01:00 |
|
|
|
b319b89750
|
WHONET fix
|
2019-03-09 08:21:00 +01:00 |
|
|
|
0c0c6e289b
|
small as.mo fix
|
2019-03-06 14:39:02 +01:00 |
|
|
|
5c7a061a5d
|
filter_ab_class fix
|
2019-03-06 09:32:48 +01:00 |
|
|
|
74e0ae21fd
|
con WHONET, filter ab class
|
2019-03-05 22:47:42 +01:00 |
|
|
|
e835525cf6
|
unknown codes, rsi fix
|
2019-03-02 22:47:04 +01:00 |
|
|
|
c5efb272fd
|
mo_source improvement
|
2019-03-01 09:34:04 +01:00 |
|
|
|
2565b60024
|
rlang dependency, new fungi
|
2019-02-28 13:56:28 +01:00 |
|
|
|
54162522bd
|
age_groups fix
|
2019-02-27 11:36:12 +01:00 |
|
|
|
f9ded23023
|
as.mo improvement
|
2019-02-26 12:33:26 +01:00 |
|
|
|
c506d2893b
|
as.mo improvements
|
2019-02-25 15:52:32 +01:00 |
|
|
|
0ec76cfa98
|
as.mo improvement
|
2019-02-25 10:42:57 +01:00 |
|
|
|
1a6314769b
|
as.mo improvement
|
2019-02-23 16:02:31 +01:00 |
|
|
|
41ad7a22c8
|
mo_rank mo_url, added Tremellales
|
2019-02-22 22:12:10 +01:00 |
|
|
|
68a9a35ed6
|
algorithm update
|
2019-02-21 18:55:52 +01:00 |
|
|
|
c6e57ca456
|
website update
|
2019-02-20 14:18:11 +01:00 |
|
|
|
13120f465f
|
website update
|
2019-02-20 13:57:23 +01:00 |
|
|
|
8dc027309e
|
website update
|
2019-02-20 10:38:24 +01:00 |
|
|
|
fb1fc3686c
|
Catalogue of life
|
2019-02-20 00:04:48 +01:00 |
|
|
|
54f8258f8c
|
Catalogue of Life, replaces ITIS
|
2019-02-18 02:33:37 +01:00 |
|
|
|
efb2af9e3a
|
benchmarks plots
|
2019-02-14 10:23:51 +01:00 |
|
|
|
76ed26d27e
|
resistance predict update
|
2019-02-11 10:27:10 +01:00 |
|
|
|
c56b179857
|
as.rsi warning, site update
|
2019-02-09 22:16:24 +01:00 |
|
|
|
ed30312048
|
mo codes for WHONET
|
2019-02-08 16:06:54 +01:00 |
|
|
|
3d3366faf7
|
is.rsi.eligible update
|
2019-02-04 18:04:29 +01:00 |
|
|
|
587e00b7be
|
is.rsi.eligible update
|
2019-02-04 12:24:07 +01:00 |
|
|
|
0b3dc0231f
|
freq fix
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2019-01-30 16:00:55 +01:00 |
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3efb54d016
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freq update
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2019-01-29 20:20:09 +01:00 |
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6aae206320
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WHONET/EARS-Net support
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2019-01-29 00:06:50 +01:00 |
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f6336fdd89
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quasiquotation for freq()
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2019-01-28 11:20:32 +01:00 |
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e76961a66b
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less deps
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2019-01-27 19:30:40 +01:00 |
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a2d3ea280a
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text updates
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2019-01-27 13:55:23 +01:00 |
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18b75356a9
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re-add atc_ddd and atc_groups
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2019-01-27 13:33:43 +01:00 |
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6ec940bc75
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atc_ functions
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2019-01-27 10:53:59 +01:00 |
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b39055c018
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deprecated fix
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2019-01-27 00:33:58 +01:00 |
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f836722269
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atc_ functions
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2019-01-26 23:22:56 +01:00 |
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f4ff98b470
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WHO update, antibiotics update
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2019-01-25 13:18:41 +01:00 |
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