Commit Graph

403 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 83907c9c65 add files (no-verify) 2024-07-17 14:31:09 +02:00
dr. M.S. (Matthijs) Berends 7258a491b9 (v2.1.1.9068) fix for mo_url() and as.mo() for synonyms 2024-07-17 14:29:55 +02:00
dr. M.S. (Matthijs) Berends 7f344836ea (v2.1.1.9064) unit tests 2024-07-16 15:55:58 +02:00
dr. M.S. (Matthijs) Berends 640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
dr. M.S. (Matthijs) Berends c67d003e9e (v2.1.1.9060) SDD results now in `as.sir()` 2024-06-19 15:08:23 +02:00
dr. M.S. (Matthijs) Berends 1bc2e04e1c (v2.1.1.9058) fix hosts, add translations 2024-06-17 22:19:38 +02:00
dr. M.S. (Matthijs) Berends 4ffac7e22d (v2.1.1.9051) fix VGS mo code 2024-06-16 11:28:56 +02:00
dr. M.S. (Matthijs) Berends 9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add `AMO`, set NI instead of N 2024-06-14 22:39:01 +02:00
dr. M.S. (Matthijs) Berends de17de1be9 (v2.1.1.9048) vctrs update for sir 2024-06-13 20:55:17 +02:00
dr. M.S. (Matthijs) Berends 3179216c81 (v2.1.1.9047) unit test and index 2024-06-13 07:37:53 +02:00
dr. M.S. (Matthijs) Berends a3071cf58b (v2.1.1.9042) update translations and example isolates 2024-06-09 11:31:04 +02:00
dr. M.S. (Matthijs) Berends af74e1d4f2 (v2.1.1.9041) antibiotics update 2024-06-08 17:35:25 +02:00
dr. M.S. (Matthijs) Berends 3e5c7d45c6 update intro logo 2024-04-24 09:58:24 +02:00
dr. M.S. (Matthijs) Berends 0d8a91db49 rename pre-commit hook to pre-commit checks (no-check) 2024-04-23 10:55:48 +02:00
dr. M.S. (Matthijs) Berends 0039cb05d6 update MIC comparisons 2024-04-05 16:44:43 +02:00
dr. M.S. (Matthijs) Berends bc4f8515e2 new Norwegian link 2024-03-03 23:24:57 +01:00
dr. M.S. (Matthijs) Berends 8d077149fa new logo 2024-02-25 14:20:43 +01:00
dr. M.S. (Matthijs) Berends 7be4dabbc0 support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
dr. M.S. (Matthijs) Berends bcab4bc9ba Fixes #123 2023-10-20 15:07:11 +02:00
dr. M.S. (Matthijs) Berends 7cda9e575b prepare for CRAN 2023-10-20 14:51:48 +02:00
dr. M.S. (Matthijs) Berends 7a4628b73f Added C. freundii complex and Y. pseudotuberculosis complex 2023-07-14 10:49:06 +02:00
dr. M.S. (Matthijs) Berends e1b4f99f4f breakpoints fixes 2023-07-12 15:20:04 +01:00
dr. M.S. (Matthijs) Berends 0c46f61260 MO group fixes 2023-07-12 15:04:48 +01:00
dr. M.S. (Matthijs) Berends 7cd9ca274c add strep groups to ABCG 2023-07-12 11:41:25 +01:00
dr. M.S. (Matthijs) Berends 5e1221bceb unit test 2023-07-10 19:04:12 +02:00
dr. M.S. (Matthijs) Berends 70c601ca11 breakpoints UTI interpretation fix 2023-07-10 13:41:52 +02:00
dr. M.S. (Matthijs) Berends acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
dr. M.S. (Matthijs) Berends 2d97cca6d9 fix `reference_df` endless loop 2023-06-26 13:52:02 +02:00
Dr. Matthijs Berends f065945d7b
Update clinical breakpoints and fix some `as.mo()` bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
dr. M.S. (Matthijs) Berends 9591688811 documentation update 2023-05-27 10:39:22 +02:00
dr. M.S. (Matthijs) Berends 8179092c57 add XPT files for SAS software 2023-05-12 10:07:55 +02:00
dr. M.S. (Matthijs) Berends 91fa73dedf add oxygen tolerance 2023-05-11 21:56:27 +02:00
dr. M.S. (Matthijs) Berends bf08d136a0 fix coercing `NA` to custom codes, fixes #107 2023-05-08 13:04:18 +02:00
dr. M.S. (Matthijs) Berends 9148a2dcf4 fix `mo_rank()` for 'unknown' MOs 2023-04-20 15:20:41 +02:00
dr. M.S. (Matthijs) Berends 02322ac2ee Fix PK/PD breakpoints 2023-04-19 00:31:31 +02:00
dr. M.S. (Matthijs) Berends cabffb22fd anaerobic codes 2023-04-17 11:26:19 +02:00
dr. M.S. (Matthijs) Berends 1a02d302d4 Fix translatable strings 2023-04-15 09:32:13 +02:00
dr. M.S. (Matthijs) Berends ed70f95380 Fix clinical breakpoints 2023-04-14 23:14:34 +02:00
dr. M.S. (Matthijs) Berends 147f9112e9 Fix some WHONET codes 2023-04-14 11:12:26 +02:00
dr. M.S. (Matthijs) Berends c28cfa3a77 fix documentation 2023-03-16 08:55:37 +01:00
dr. M.S. (Matthijs) Berends 262598b8d7 support for old rsi arguments 2023-03-11 14:24:34 +01:00
dr. M.S. (Matthijs) Berends 4416394e10 website update 2023-02-26 21:26:58 +01:00
dr. M.S. (Matthijs) Berends 2c5a9bb622 new relative episode determination in `get_episode()`, fix for plotting disk/MIC values 2023-02-24 17:06:30 +01:00
dr. M.S. (Matthijs) Berends 049baf0a71 fix for antibiograms on R < 3.5 2023-02-24 09:43:10 +01:00
dr. M.S. (Matthijs) Berends e70f2cd32c knitr format 2023-02-23 16:27:40 +01:00
dr. M.S. (Matthijs) Berends dad25302f2 make `rsi` work in more cases, documentation update 2023-02-22 14:38:57 +01:00
dr. M.S. (Matthijs) Berends 45a9697c84 unit tests 2023-02-12 17:10:48 +01:00
dr. M.S. (Matthijs) Berends c51fb24363 pm_bind_rows 2023-02-11 22:28:48 +01:00
dr. M.S. (Matthijs) Berends b146de6d7f fix for bind_rows2, added 4 langs 2023-02-11 21:57:12 +01:00
dr. M.S. (Matthijs) Berends bc434db835 bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00