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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 10:46:12 +01:00
Commit Graph

1020 Commits

Author SHA1 Message Date
8907e8e4af (v2.1.1.9083) update for first_isolate() 2024-09-30 19:13:53 +02:00
681fe011fe (v2.1.1.9082) algorithm updates 2024-09-30 18:46:55 +02:00
ac1c40d8bb (v2.1.1.9081) HUGE microorganisms update for fungi! 2024-09-29 22:17:56 +02:00
a558f4c121 (v2.1.1.9080) fix rescale_mic() for an outside MIC range 2024-09-24 22:39:40 +02:00
1ca40e8d67 (v2.1.1.9079) fix for uti in as.sir() 2024-09-24 15:34:12 +02:00
127892430d (v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA 2024-09-22 11:45:51 +02:00
4e96a56b6a (v2.1.1.9073) unit tests 2024-09-19 13:57:36 +02:00
ddb23b6e73 (v2.1.1.9071) update veterinary SIR interpretation, add only_fungi 2024-09-19 11:44:56 +02:00
573c0346ed (v2.1.1.9070) fix for mo_current mo (no-verify) 2024-07-19 18:05:49 +02:00
7258a491b9 (v2.1.1.9068) fix for mo_url() and as.mo() for synonyms 2024-07-17 14:29:55 +02:00
ff03bb6471 (v2.1.1.9065) unit tests 2 2024-07-16 15:58:18 +02:00
7f344836ea (v2.1.1.9064) unit tests 2024-07-16 15:55:58 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
82585901a7 (v2.1.1.9061) animal host fix 2024-06-19 15:41:45 +02:00
c67d003e9e (v2.1.1.9060) SDD results now in as.sir() 2024-06-19 15:08:23 +02:00
0c3d81f32e (v2.1.1.9059) documentation fix 2024-06-17 22:26:05 +02:00
1bc2e04e1c (v2.1.1.9058) fix hosts, add translations 2024-06-17 22:19:38 +02:00
a4dc37a4e4 (v2.1.1.9057) fix for missing breakpoints 2024-06-17 16:52:12 +02:00
d9e66fb118 (v2.1.1.9056) example fix 2024-06-17 14:52:18 +02:00
1e65b5a289 (v2.1.1.9055) example fix 2024-06-17 14:36:40 +02:00
13baf8d7be (v2.1.1.9054) fix examples 2024-06-17 13:52:02 +02:00
2dee1d71dc (v2.1.1.9053) add verbose to as.sir(), unit test fix 2024-06-17 10:38:45 +02:00
68f7795481 (v2.1.1.9052) unit test fix 2024-06-16 20:53:50 +02:00
bdbf5198a2 (v2.1.1.9050) vctrs fix for sir, small documentation fixes 2024-06-15 15:33:49 +02:00
9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
de17de1be9 (v2.1.1.9048) vctrs update for sir 2024-06-13 20:55:17 +02:00
c753afcd76 (v2.1.1.9045) fix host in animal guidelines 2024-06-12 10:32:43 +02:00
31207952d3 (v2.1.1.9043) fix sir translation with as.double 2024-06-10 10:34:45 +02:00
a3071cf58b (v2.1.1.9042) update translations and example isolates 2024-06-09 11:31:04 +02:00
af74e1d4f2 (v2.1.1.9041) antibiotics update 2024-06-08 17:35:25 +02:00
c5981cdeb3 fix unit test 2024-06-04 20:17:54 +02:00
7c1b564648 fix SIR interpretation for uti 2024-05-31 21:24:35 +02:00
60c6c21e45 fix SIR interpretation 2024-05-31 09:50:54 +02:00
ba4dc20cf3 autoplot fix 2024-05-30 16:39:59 +02:00
d4490c7f25 fix sorting of MICs, MIC autoplot titles 2024-05-30 15:50:17 +02:00
c3ce1b551d rename limit_mic_range() to rescale_mic() 2024-05-24 15:07:41 +02:00
d214f74e25 allow column name for ab in as.sir() 2024-05-20 21:29:13 +02:00
fc269e667d unit test fix 2024-05-20 18:58:35 +02:00
08a27922a8 new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
b68f47d985 improved algorithm of as.ab() 2024-05-12 16:24:44 +02:00
1bce7ed3d3 fix git hooks 2024-04-24 11:58:16 +02:00
7f18e66c4e unit test fix 2024-04-24 11:42:43 +02:00
3e5c7d45c6 update intro logo 2024-04-24 09:58:24 +02:00
25089e811e correct for high-level abx 2024-04-24 09:50:32 +02:00
0d8a91db49 rename pre-commit hook to pre-commit checks (no-check) 2024-04-23 10:55:48 +02:00
35f095cceb fixes #148 2024-04-23 09:34:05 +02:00
2899b3c840 new mo_group_members() 2024-04-19 10:18:21 +02:00
94e9a4d99b update MIC implementation 2024-04-07 20:22:59 +02:00
0039cb05d6 update MIC comparisons 2024-04-05 16:44:43 +02:00
bc4f8515e2 new Norwegian link 2024-03-03 23:24:57 +01:00