1
0
mirror of https://github.com/msberends/AMR.git synced 2024-12-26 06:46:11 +01:00
Commit Graph

412 Commits

Author SHA1 Message Date
94501371cd (v2.1.1.9094) fix antibiotics 2024-10-10 16:38:20 +02:00
ef79d22daf (v2.1.1.9093) New brand names 2024-10-06 22:30:52 +02:00
325664f5aa (v2.1.1.9090) website error 2024-10-04 16:08:41 +02:00
0736ac7a7e (v2.1.1.9089) website update 2024-10-04 15:44:05 +02:00
9fb891eee2 (v2.1.1.9087) update unit tests 2024-10-04 15:28:44 +02:00
50a9f8f0e0 (v2.1.1.9086) website update 2024-10-02 10:20:05 +02:00
681fe011fe (v2.1.1.9082) algorithm updates 2024-09-30 18:46:55 +02:00
ac1c40d8bb (v2.1.1.9081) HUGE microorganisms update for fungi! 2024-09-29 22:17:56 +02:00
ddb23b6e73 (v2.1.1.9071) update veterinary SIR interpretation, add only_fungi 2024-09-19 11:44:56 +02:00
83907c9c65 add files (no-verify) 2024-07-17 14:31:09 +02:00
7258a491b9 (v2.1.1.9068) fix for mo_url() and as.mo() for synonyms 2024-07-17 14:29:55 +02:00
7f344836ea (v2.1.1.9064) unit tests 2024-07-16 15:55:58 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
c67d003e9e (v2.1.1.9060) SDD results now in as.sir() 2024-06-19 15:08:23 +02:00
1bc2e04e1c (v2.1.1.9058) fix hosts, add translations 2024-06-17 22:19:38 +02:00
4ffac7e22d (v2.1.1.9051) fix VGS mo code 2024-06-16 11:28:56 +02:00
9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
de17de1be9 (v2.1.1.9048) vctrs update for sir 2024-06-13 20:55:17 +02:00
3179216c81 (v2.1.1.9047) unit test and index 2024-06-13 07:37:53 +02:00
a3071cf58b (v2.1.1.9042) update translations and example isolates 2024-06-09 11:31:04 +02:00
af74e1d4f2 (v2.1.1.9041) antibiotics update 2024-06-08 17:35:25 +02:00
3e5c7d45c6 update intro logo 2024-04-24 09:58:24 +02:00
0d8a91db49 rename pre-commit hook to pre-commit checks (no-check) 2024-04-23 10:55:48 +02:00
0039cb05d6 update MIC comparisons 2024-04-05 16:44:43 +02:00
bc4f8515e2 new Norwegian link 2024-03-03 23:24:57 +01:00
8d077149fa new logo 2024-02-25 14:20:43 +01:00
7be4dabbc0 support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
bcab4bc9ba Fixes #123 2023-10-20 15:07:11 +02:00
7cda9e575b prepare for CRAN 2023-10-20 14:51:48 +02:00
7a4628b73f Added C. freundii complex and Y. pseudotuberculosis complex 2023-07-14 10:49:06 +02:00
e1b4f99f4f breakpoints fixes 2023-07-12 15:20:04 +01:00
0c46f61260 MO group fixes 2023-07-12 15:04:48 +01:00
7cd9ca274c add strep groups to ABCG 2023-07-12 11:41:25 +01:00
5e1221bceb unit test 2023-07-10 19:04:12 +02:00
70c601ca11 breakpoints UTI interpretation fix 2023-07-10 13:41:52 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
2d97cca6d9 fix reference_df endless loop 2023-06-26 13:52:02 +02:00
Dr. Matthijs Berends
f065945d7b
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
8179092c57 add XPT files for SAS software 2023-05-12 10:07:55 +02:00
91fa73dedf add oxygen tolerance 2023-05-11 21:56:27 +02:00
bf08d136a0 fix coercing NA to custom codes, fixes #107 2023-05-08 13:04:18 +02:00
9148a2dcf4 fix mo_rank() for 'unknown' MOs 2023-04-20 15:20:41 +02:00
02322ac2ee Fix PK/PD breakpoints 2023-04-19 00:31:31 +02:00
cabffb22fd anaerobic codes 2023-04-17 11:26:19 +02:00
1a02d302d4 Fix translatable strings 2023-04-15 09:32:13 +02:00
ed70f95380 Fix clinical breakpoints 2023-04-14 23:14:34 +02:00
147f9112e9 Fix some WHONET codes 2023-04-14 11:12:26 +02:00
c28cfa3a77 fix documentation 2023-03-16 08:55:37 +01:00
262598b8d7 support for old rsi arguments 2023-03-11 14:24:34 +01:00