dr. M.S. (Matthijs) Berends
766db4e21f
as.mo fix
2023-05-26 19:20:21 +02:00
dr. M.S. (Matthijs) Berends
2758615cd0
version fix
2023-04-19 00:34:41 +02:00
dr. M.S. (Matthijs) Berends
02322ac2ee
Fix PK/PD breakpoints
2023-04-19 00:31:31 +02:00
dr. M.S. (Matthijs) Berends
cabffb22fd
anaerobic codes
2023-04-17 11:26:19 +02:00
dr. M.S. (Matthijs) Berends
ad3061c754
unit test
2023-04-15 10:32:37 +02:00
dr. M.S. (Matthijs) Berends
1a02d302d4
Fix translatable strings
2023-04-15 09:32:13 +02:00
dr. M.S. (Matthijs) Berends
ed70f95380
Fix clinical breakpoints
2023-04-14 23:14:34 +02:00
dr. M.S. (Matthijs) Berends
147f9112e9
Fix some WHONET codes
2023-04-14 11:12:26 +02:00
dr. M.S. (Matthijs) Berends
dd7cc86485
help page %like%
2023-03-14 19:49:50 +01:00
dr. M.S. (Matthijs) Berends
68aa98f294
website
2023-03-12 15:59:25 +01:00
dr. M.S. (Matthijs) Berends
e70f2cd32c
knitr format
2023-02-23 16:27:40 +01:00
dr. M.S. (Matthijs) Berends
830c67f1bf
documentation, unit tests
2023-01-24 10:20:27 +01:00
dr. M.S. (Matthijs) Berends
593d740b84
documentation, file permissions
2023-01-19 12:54:53 +01:00
dr. M.S. (Matthijs) Berends
b94bc6c67b
adding mo fixes
2023-01-14 19:50:25 +01:00
dr. M.S. (Matthijs) Berends
ca79068604
Fix for adding MO's
2023-01-14 17:10:10 +01:00
dr. M.S. (Matthijs) Berends
33f269e2f4
contrib update
2023-01-12 23:16:05 +01:00
dr. M.S. (Matthijs) Berends
1029aa2fdc
algorithm improvement
2023-01-07 14:53:14 +01:00
dr. M.S. (Matthijs) Berends
08fe5a88c0
documentation
2023-01-07 01:54:46 +01:00
dr. M.S. (Matthijs) Berends
2375bfdcb5
documentation
2023-01-07 01:51:19 +01:00
dr. M.S. (Matthijs) Berends
84ed8c32bb
documentation
2023-01-06 19:21:04 +01:00
dr. M.S. (Matthijs) Berends
cf16bc7de1
unit tests
2023-01-06 13:45:20 +01:00
dr. M.S. (Matthijs) Berends
86e28bafce
add mo_pathogenicity
2023-01-06 13:35:37 +01:00
dr. M.S. (Matthijs) Berends
4801a6067e
unit tests
2023-01-06 11:22:02 +01:00
dr. M.S. (Matthijs) Berends
8a0a0d4682
unit tests
2023-01-06 10:08:25 +01:00
dr. M.S. (Matthijs) Berends
268ec31d92
unit tests
2023-01-05 18:21:48 +01:00
dr. M.S. (Matthijs) Berends
61c0bdb7af
documentation
2022-12-28 15:04:59 +01:00
dr. M.S. (Matthijs) Berends
fe09e9252b
custom mo update
2022-12-27 16:03:03 +01:00
dr. M.S. (Matthijs) Berends
f619fb683b
support new mo codes
2022-12-27 15:16:15 +01:00
dr. M.S. (Matthijs) Berends
e493248ea5
unit test and news file
2022-12-21 09:12:53 +01:00
dr. M.S. (Matthijs) Berends
4c42a43f7d
fixes
2022-12-20 22:41:39 +01:00
dr. M.S. (Matthijs) Berends
6f4bb603ec
unit tests
2022-12-20 22:18:50 +01:00
dr. M.S. (Matthijs) Berends
b1ead9c0fe
doc update
2022-12-10 10:09:57 +01:00
dr. M.S. (Matthijs) Berends
05d536ebb7
complexes
2022-11-17 15:23:29 +01:00
dr. M.S. (Matthijs) Berends
8d1679bab3
website update
2022-11-12 09:44:36 +01:00
dr. M.S. (Matthijs) Berends
af205e2705
update collabs
2022-11-10 22:07:35 +01:00
dr. M.S. (Matthijs) Berends
2d90218305
documentation fix
2022-11-05 12:06:40 +01:00
dr. M.S. (Matthijs) Berends
8dc94a9eda
documentation fix
2022-11-05 09:31:19 +01:00
dr. M.S. (Matthijs) Berends
3b652983b7
documentation fix
2022-11-05 08:18:06 +01:00
dr. M.S. (Matthijs) Berends
faca6d608a
mean AMR distance
2022-10-21 16:02:14 +02:00
dr. M.S. (Matthijs) Berends
178ab5e5ff
mean AMR distance
2022-10-21 15:59:31 +02:00
dr. M.S. (Matthijs) Berends
4bebba3610
fix for scoped dplyr verbs
2022-10-21 15:13:19 +02:00
dr. M.S. (Matthijs) Berends
85e2fbe4a3
remove warnings from unit tests
2022-10-19 11:47:57 +02:00
dr. M.S. (Matthijs) Berends
f203928f7e
coercion fixes
2022-10-19 06:59:36 +02:00
dr. M.S. (Matthijs) Berends
3fc39198d0
unit test fix
2022-10-18 23:03:16 +02:00
dr. M.S. (Matthijs) Berends
e5e6d2200d
fix add manual ab
2022-10-18 22:53:38 +02:00
dr. M.S. (Matthijs) Berends
ad68b50ecd
custom ab fix
2022-10-15 15:20:13 +02:00
dr. M.S. (Matthijs) Berends
57d66cd9d0
doc fix
2022-10-10 21:38:39 +02:00
dr. M.S. (Matthijs) Berends
4da32e3d40
set up Git LFS for large files
2022-08-26 14:02:08 +02:00
dr. M.S. (Matthijs) Berends
e05d0365a9
website update
2022-08-25 19:19:16 +02:00
dr. M.S. (Matthijs) Berends
5501cffbb0
website update
2022-08-25 19:18:48 +02:00
dr. M.S. (Matthijs) Berends
d3000a9492
website update
2022-08-25 19:16:16 +02:00
dr. M.S. (Matthijs) Berends
2cbce2cefa
website update
2022-08-25 19:14:07 +02:00
dr. M.S. (Matthijs) Berends
53c4b37252
website update
2022-08-25 19:11:02 +02:00
dr. M.S. (Matthijs) Berends
bdbc112f99
website update
2022-08-21 17:22:34 +02:00
dr. M.S. (Matthijs) Berends
d6676e9443
disk documentation fix
2022-08-21 16:52:09 +02:00
dr. M.S. (Matthijs) Berends
952d16de33
new, automated website
2022-08-21 16:37:20 +02:00
dr. M.S. (Matthijs) Berends
7226b70c3d
update languages
2022-08-20 20:17:14 +02:00
dr. M.S. (Matthijs) Berends
3f2f60ab77
language updates
2022-08-19 12:33:14 +02:00
dr. M.S. (Matthijs) Berends
ab97268f4c
(v1.8.1.9014) add Toxoplasma
2022-08-12 23:27:15 +02:00
dr. M.S. (Matthijs) Berends
7f981e7778
(v1.8.1.9013) add Toxoplasma
2022-06-10 13:15:23 +02:00
dr. M.S. (Matthijs) Berends
b84d647cac
(v1.8.1.9012) update prevalence of some genera
2022-06-03 13:28:55 +02:00
dr. M.S. (Matthijs) Berends
1b84564d36
(v1.8.1.9011) update prevalence of some genera
2022-06-03 12:43:25 +02:00
dr. M.S. (Matthijs) Berends
70a07bad39
(v1.8.1.9010) random when pkg not loaded
2022-05-16 12:52:50 +02:00
dr. M.S. (Matthijs) Berends
2c5bc73ed6
(v1.8.1.9009) random when pkg not loaded
2022-05-16 09:29:46 +02:00
dr. M.S. (Matthijs) Berends
58ed15e7ac
(v1.8.1.9008) website update
2022-05-11 10:26:58 +02:00
dr. M.S. (Matthijs) Berends
6de5375256
(v1.8.1.9007) website update
2022-05-11 10:10:31 +02:00
dr. M.S. (Matthijs) Berends
859224e9d0
(v1.8.1.9006) added EUCAST 2022 and CLSI 2022
2022-05-10 21:34:30 +02:00
dr. M.S. (Matthijs) Berends
680e8e7a41
(v1.8.1.9005) as.rsi() fix for EUCAST
2022-05-10 17:01:37 +02:00
dr. M.S. (Matthijs) Berends
d4e22069bc
(v1.8.1.9004) fix for table() on MICs
2022-05-09 21:33:27 +02:00
dr. M.S. (Matthijs) Berends
1c891cc90c
(v1.8.1.9003) set_mo_source() fix
2022-05-09 20:36:44 +02:00
dr. M.S. (Matthijs) Berends
152db9d1b5
(v1.8.1.9002) fix for table() on MICs
2022-05-09 17:08:40 +02:00
dr. M.S. (Matthijs) Berends
4754848e96
(v1.8.1.9001) update unit tests, fixes #53
2022-04-08 11:02:45 +02:00
dr. M.S. (Matthijs) Berends
7b0f1596bd
(v1.8.0.9010) as.mo improvement
2022-03-15 17:35:02 +01:00
dr. M.S. (Matthijs) Berends
0fb9a1b194
prerelease 1.8.1
2022-03-14 16:43:15 +01:00
dr. M.S. (Matthijs) Berends
45e9546538
prerelease 1.8.1
...
Merge branch 'development' of https://github.com/msberends/AMR into development
# Conflicts:
# docs/articles/AMR.html
# docs/articles/AMR_files/figure-html/disk_plots-1.png
# docs/articles/AMR_files/figure-html/disk_plots_mo_ab-1.png
# docs/articles/AMR_files/figure-html/mic_plots-1.png
# docs/articles/AMR_files/figure-html/mic_plots-2.png
# docs/articles/AMR_files/figure-html/mic_plots_mo_ab-1.png
# docs/articles/AMR_files/figure-html/mic_plots_mo_ab-2.png
# docs/articles/AMR_files/figure-html/plot 1-1.png
# docs/articles/AMR_files/figure-html/plot 3-1.png
# docs/articles/AMR_files/figure-html/plot 4-1.png
# docs/articles/AMR_files/figure-html/plot 5-1.png
# docs/articles/EUCAST.html
# docs/articles/MDR.html
# docs/articles/PCA.html
# docs/articles/PCA_files/figure-html/unnamed-chunk-6-1.png
# docs/articles/PCA_files/figure-html/unnamed-chunk-7-1.png
# docs/articles/SPSS.html
# docs/articles/WHONET.html
# docs/articles/WHONET_files/figure-html/unnamed-chunk-7-1.png
# docs/articles/benchmarks.html
# docs/articles/benchmarks_files/figure-html/unnamed-chunk-4-1.png
# docs/articles/datasets.html
# docs/articles/resistance_predict.html
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-4-1.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-5-1.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-5-2.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-6-1.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-7-1.png
# docs/articles/welcome_to_AMR.html
# docs/news/index.html
# docs/pkgdown.yml
# docs/reference/AMR-deprecated.html
# docs/reference/AMR.html
# docs/reference/WHOCC.html
# docs/reference/WHONET.html
# docs/reference/antibiotics.html
# docs/reference/catalogue_of_life.html
# docs/reference/catalogue_of_life_version.html
# docs/reference/dosage.html
# docs/reference/example_isolates.html
# docs/reference/example_isolates_unclean.html
# docs/reference/g.test.html
# docs/reference/intrinsic_resistant.html
# docs/reference/microorganisms.codes.html
# docs/reference/microorganisms.html
# docs/reference/microorganisms.old.html
# docs/reference/rsi_translation.html
2022-03-14 16:37:37 +01:00
dr. M.S. (Matthijs) Berends
1b0983e382
(v1.8.1) prerelease 1.8.1
2022-03-14 16:36:10 +01:00
dr. M.S. (Matthijs) Berends
08d387b5ce
(v1.8.0.9005) as.rsi() fix
2022-03-10 19:33:25 +01:00
dr. M.S. (Matthijs) Berends
ad82bb4ce0
(v1.8.0.9004) MIC printing in tibbles
2022-03-03 21:11:02 +01:00
dr. M.S. (Matthijs) Berends
3b2b2be5f8
(v1.8.0.9002) as.rsi() cleanup, more informative warnings
2022-03-02 15:38:55 +01:00
dr. M.S. (Matthijs) Berends
18e8525d10
(v1.8.0.9001) as.mo improvement, fixes #52
2022-02-26 21:58:23 +01:00
dr. M.S. (Matthijs) Berends
be792cc9eb
(v1.8.0.9000) unit tests for R 3.3
2022-02-01 17:08:10 +01:00
dr. M.S. (Matthijs) Berends
f5dcf0ad58
v1.8.0 as accepted by CRAN
2022-01-07 16:27:13 +01:00
dr. M.S. (Matthijs) Berends
25cef46c59
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
dr. M.S. (Matthijs) Berends
3f4ff260d2
unit test
2021-12-23 15:36:54 +01:00
dr. M.S. (Matthijs) Berends
75dac113b6
(v1.7.1.9077) skimr support only for newer R versions
2021-12-23 13:38:25 +01:00
dr. M.S. (Matthijs) Berends
ed22b83c28
fix macOS r-lib/actions unit test
2021-12-22 09:44:10 +01:00
dr. M.S. (Matthijs) Berends
d9274bcd0a
(v1.7.1.9075) assignment operator
2021-12-14 22:59:27 +01:00
dr. M.S. (Matthijs) Berends
76dee66852
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
2021-12-14 22:39:23 +01:00
dr. M.S. (Matthijs) Berends
bd4bb1d72f
(v1.7.1.9073) as.rsi() fix for UTIs
2021-12-14 21:47:14 +01:00
dr. M.S. (Matthijs) Berends
5eef01165e
(v1.7.1.9072) as.rsi() fix for UTIs
2021-12-14 12:33:29 +01:00
dr. M.S. (Matthijs) Berends
0cbf8f48b6
(v1.7.1.9071) rsi disk fix
2021-12-13 11:57:34 +01:00
dr. M.S. (Matthijs) Berends
578e7dfee9
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
dr. M.S. (Matthijs) Berends
f90e27c1b0
(v1.7.1.9069) CLSI 2021 support
2021-12-12 11:36:58 +01:00
dr. M.S. (Matthijs) Berends
1e66a3daf3
(v1.7.1.9068) new logo, unit tests
2021-12-12 11:07:02 +01:00
dr. M.S. (Matthijs) Berends
56f1ce328a
(v1.7.1.9067) Support for Swedish and Russian
2021-12-12 09:42:03 +01:00
dr. M.S. (Matthijs) Berends
5b5f70a103
(v1.7.1.9066) mdro EUCAST v3.3
2021-12-11 15:29:30 +01:00
dr. M.S. (Matthijs) Berends
e0a2634f14
(v1.7.1.9065) unit tests
2021-12-11 15:13:44 +01:00
dr. M.S. (Matthijs) Berends
77ba4318ea
(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
2021-12-11 13:41:31 +01:00
dr. M.S. (Matthijs) Berends
e18c49ed93
(v1.7.1.9063) not_intrinsic_resistant
2021-12-09 10:48:25 +01:00
dr. M.S. (Matthijs) Berends
e63defe324
(v1.7.1.9062) website update
2021-12-06 11:12:30 +01:00
