dr. M.S. (Matthijs) Berends
db14781593
add labels_rsi_count
2018-09-16 22:11:17 +02:00
dr. M.S. (Matthijs) Berends
b792a2754e
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
2018-09-16 16:43:29 +02:00
dr. M.S. (Matthijs) Berends
b0ca49d68d
small improvement for is.rsi.eligible, more unit tests
2018-09-14 11:54:01 +02:00
dr. M.S. (Matthijs) Berends
cf5711fb0b
algorithm improvement
2018-09-14 10:31:21 +02:00
dr. M.S. (Matthijs) Berends
d049ec9e69
ggplot2_rsi fix
2018-09-13 14:48:34 +02:00
dr. M.S. (Matthijs) Berends
cb0d74a4f0
support for French and Italian, added quote to freq
2018-09-10 15:45:25 +02:00
dr. M.S. (Matthijs) Berends
b83e6a9380
algoritm improvement, removed all Catabacter except for C. hongkongensis
2018-09-10 11:40:54 +02:00
dr. M.S. (Matthijs) Berends
4816419f0c
AI improvements for microorganisms
2018-09-09 12:11:44 +02:00
dr. M.S. (Matthijs) Berends
936198372e
translate CoNS
2018-09-08 16:24:12 +02:00
dr. M.S. (Matthijs) Berends
26f5be0033
support for portuguese, language determination based on system
2018-09-08 16:06:47 +02:00
dr. M.S. (Matthijs) Berends
b8a6c9af19
allow failure on macOS
2018-09-07 10:20:01 +02:00
dr. M.S. (Matthijs) Berends
0de65438b1
vignet fix
2018-09-07 09:32:31 +02:00
dr. M.S. (Matthijs) Berends
c5073f2fd1
small fix for microorganisms data set
2018-09-06 16:50:03 +02:00
dr. M.S. (Matthijs) Berends
de36b0be23
fix for empty values in mo_property
2018-09-05 12:21:27 +02:00
dr. M.S. (Matthijs) Berends
e39a9a8b05
added mo_shortname
2018-09-05 10:51:46 +02:00
dr. M.S. (Matthijs) Berends
790bd1622d
added vanA to vanE positive Enterococci
2018-09-05 09:49:19 +02:00
dr. M.S. (Matthijs) Berends
b388e3fee7
Support for German and Spanish microorganism properties, cleanup
2018-09-04 11:33:30 +02:00
dr. M.S. (Matthijs) Berends
5405002119
news update
2018-09-03 11:22:28 +02:00
dr. M.S. (Matthijs) Berends
e25dd0e282
fix for joins
2018-09-03 10:04:49 +02:00
dr. M.S. (Matthijs) Berends
75fe4d401f
new MOs, cleanup
2018-09-01 21:19:46 +02:00
dr. M.S. (Matthijs) Berends
5965d3c794
replaced bactid by mo
2018-08-31 13:36:19 +02:00
dr. M.S. (Matthijs) Berends
98ff131680
support for older versions of ggplot2
2018-08-29 16:39:28 +02:00
dr. M.S. (Matthijs) Berends
d654444c8e
re added nrow
2018-08-29 16:35:32 +02:00
dr. M.S. (Matthijs) Berends
d9e68e0a50
ggplot_rsi example update, more unit tests
2018-08-29 16:25:57 +02:00
dr. M.S. (Matthijs) Berends
029157b3be
163 new trade names, added ab_tradenames
2018-08-29 12:27:37 +02:00
dr. M.S. (Matthijs) Berends
972fc4f6c7
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
2018-08-28 13:51:13 +02:00
dr. M.S. (Matthijs) Berends
2acdb1981c
atc and bactid functions, readme update
2018-08-25 22:01:14 +02:00
dr. M.S. (Matthijs) Berends
460dee789f
typo
2018-08-24 14:33:35 +02:00
dr. M.S. (Matthijs) Berends
baaf4cc3e1
few extra tests
2018-08-24 14:18:38 +02:00
dr. M.S. (Matthijs) Berends
a100d07da6
removed ratio, better rsi_calc, update for freq
2018-08-24 11:08:20 +02:00
dr. M.S. (Matthijs) Berends
0c0e538ef4
dependencies
2018-08-23 22:05:17 +02:00
dr. M.S. (Matthijs) Berends
febd0ca885
geom_rsi - any parameter
2018-08-23 21:27:15 +02:00
dr. M.S. (Matthijs) Berends
eee122825c
rlang dep for macOS
2018-08-23 01:18:58 +02:00
dr. M.S. (Matthijs) Berends
8ab93b6688
unit tests
2018-08-23 01:01:50 +02:00
dr. M.S. (Matthijs) Berends
da5379c881
quasiquotation, alpha for geom_rsi
2018-08-23 00:40:36 +02:00
dr. M.S. (Matthijs) Berends
3e87c8f409
count_* functions
2018-08-22 00:02:26 +02:00
dr. M.S. (Matthijs) Berends
8bad33858e
readme typo
2018-08-15 11:12:38 +02:00
dr. M.S. (Matthijs) Berends
bc7e36b533
v0.3.0
2018-08-14 14:06:18 +02:00
dr. M.S. (Matthijs) Berends
6bab01948e
v0.3.0
2018-08-14 13:25:24 +02:00
dr. M.S. (Matthijs) Berends
1699d7b8b3
better example of grouping variable in ggplot_rsi
2018-08-14 12:07:03 +02:00
dr. M.S. (Matthijs) Berends
b0995362af
testthat error
2018-08-14 12:00:01 +02:00
dr. M.S. (Matthijs) Berends
533342583a
Travis checks
2018-08-14 11:37:40 +02:00
dr. M.S. (Matthijs) Berends
324d8b955e
AppVeyor update
2018-08-14 11:25:36 +02:00
dr. M.S. (Matthijs) Berends
7584c929a5
new AppVeyor environment
2018-08-14 08:57:17 +02:00
dr. M.S. (Matthijs) Berends
e5193c7749
AppVeyor
2018-08-13 23:05:53 +02:00
dr. M.S. (Matthijs) Berends
59ce1eb1b1
ggplot_rsi improvements
2018-08-13 16:42:37 +02:00
dr. M.S. (Matthijs) Berends
dba06c3295
abname improvement, small fixes
2018-08-13 11:00:53 +02:00
dr. M.S. (Matthijs) Berends
ce2cdb9309
support groups for portion_df, update README
2018-08-12 22:34:03 +02:00
dr. M.S. (Matthijs) Berends
e5d32cafe0
new unit tests for ggplot, small fixes
2018-08-12 17:44:06 +02:00
dr. M.S. (Matthijs) Berends
1ba7d883fe
new ggplot enhancement
2018-08-11 21:30:00 +02:00
dr. M.S. (Matthijs) Berends
4680df1e9c
travis: no devel for osx
2018-08-10 15:06:09 +02:00
dr. M.S. (Matthijs) Berends
53fa198e35
new portion functions
2018-08-10 15:01:05 +02:00
dr. M.S. (Matthijs) Berends
ae2433a020
rsi family for resistance analysis
2018-08-03 14:49:29 +02:00
dr. M.S. (Matthijs) Berends
227121af3d
add Dialister to microorganisms
2018-08-03 11:46:06 +02:00
dr. M.S. (Matthijs) Berends
db5a0d32a5
typos of Becker algorithm
2018-08-03 10:58:48 +02:00
dr. M.S. (Matthijs) Berends
bd9bcfef78
thesis advisors
2018-08-03 09:59:39 +02:00
dr. M.S. (Matthijs) Berends
6262315527
Becker classification
...
Lancefield classification
Added Lancefield groups to `microorganisms` data set
2018-08-02 13:15:45 +02:00
dr. M.S. (Matthijs) Berends
edd2dd09dc
rsi for freq
2018-08-01 22:37:28 +02:00
dr. M.S. (Matthijs) Berends
d8f70a74de
clipboard error
2018-08-01 10:32:24 +02:00
dr. M.S. (Matthijs) Berends
a59d0661f7
check CMD error
2018-08-01 09:45:11 +02:00
dr. M.S. (Matthijs) Berends
7c667eb732
emph guess_bactid
2018-08-01 08:03:31 +02:00
dr. M.S. (Matthijs) Berends
36a5493099
travis update again
2018-07-30 01:22:50 +02:00
dr. M.S. (Matthijs) Berends
837dae925d
travis update
2018-07-30 01:21:37 +02:00
dr. M.S. (Matthijs) Berends
211e3bae14
remove reshape2 dependency
2018-07-30 01:18:40 +02:00
dr. M.S. (Matthijs) Berends
510e8f22aa
more unit tests
2018-07-30 00:57:49 +02:00
dr. M.S. (Matthijs) Berends
d0a115d995
bactid speed improvement
2018-07-30 00:14:06 +02:00
dr. M.S. (Matthijs) Berends
826694323b
new functions R, RI, SI, S
2018-07-29 22:14:51 +02:00
dr. M.S. (Matthijs) Berends
8421e3f005
more mic classes
2018-07-28 10:48:27 +02:00
dr. M.S. (Matthijs) Berends
feab1cad6b
small fixes
2018-07-28 09:34:03 +02:00
dr. M.S. (Matthijs) Berends
498e88b5cf
improvement for forecasting resistance
2018-07-26 16:30:42 +02:00
dr. M.S. (Matthijs) Berends
d9e204031d
update to septic_patients, speed improvements
2018-07-25 14:17:04 +02:00
dr. M.S. (Matthijs) Berends
03a3cb397b
clipboard update
2018-07-23 15:09:19 +02:00
dr. M.S. (Matthijs) Berends
8421638b60
new class bactid
2018-07-23 14:14:03 +02:00
dr. M.S. (Matthijs) Berends
40de1b4ac2
man
2018-07-23 10:37:49 +02:00
dr. M.S. (Matthijs) Berends
9920ac8a5c
fix for keyab, more examples
2018-07-23 10:35:39 +02:00
dr. M.S. (Matthijs) Berends
ad662d7bab
new col names for key_antibiotics
2018-07-19 15:11:23 +02:00
dr. M.S. (Matthijs) Berends
0d64c166f0
keyab fixes
2018-07-17 19:51:09 +02:00
dr. M.S. (Matthijs) Berends
2a4d759fbc
check fails
2018-07-17 14:48:11 +02:00
dr. M.S. (Matthijs) Berends
5cb9c541f8
new algorithm key abs
2018-07-17 13:02:05 +02:00
dr. M.S. (Matthijs) Berends
967ee86757
add unit tests
2018-07-17 11:18:36 +02:00
dr. M.S. (Matthijs) Berends
a5a4354651
speed improvements
2018-07-17 10:32:26 +02:00
dr. M.S. (Matthijs) Berends
715a7630ca
support format.freq
2018-07-16 16:41:48 +02:00
dr. M.S. (Matthijs) Berends
6eaf33baf3
speed improvements
2018-07-15 22:56:41 +02:00
dr. M.S. (Matthijs) Berends
8240959f38
support older mac release
2018-07-13 19:40:50 +02:00
dr. M.S. (Matthijs) Berends
b6655f6454
Welcome C++!
2018-07-13 17:23:46 +02:00
dr. M.S. (Matthijs) Berends
a28289562a
remove print function, out of scope
2018-07-11 20:12:19 +02:00
dr. M.S. (Matthijs) Berends
e3e10c2e88
fix for macOS and older tidyr versions
2018-07-11 12:34:02 +02:00
dr. M.S. (Matthijs) Berends
eca406b18b
travis build fails for macos
2018-07-11 11:46:06 +02:00
dr. M.S. (Matthijs) Berends
673ea81c0a
libgit2 for macOS
2018-07-11 11:04:54 +02:00
dr. M.S. (Matthijs) Berends
330558e0f1
travis update
2018-07-11 10:39:47 +02:00
dr. M.S. (Matthijs) Berends
9e40771a17
get travis working again
2018-07-10 16:36:30 +02:00
dr. M.S. (Matthijs) Berends
490990c8cb
no errors on 3.1 and 3.2
2018-07-10 16:31:13 +02:00
dr. M.S. (Matthijs) Berends
0da1071cd8
latest R version on both linux and macOS
2018-07-10 16:17:09 +02:00
dr. M.S. (Matthijs) Berends
f2684b29e7
test R 3.1 to latest
2018-07-10 16:05:11 +02:00
dr. M.S. (Matthijs) Berends
cde1892e25
allow failure of covr
2018-07-10 15:56:00 +02:00
dr. M.S. (Matthijs) Berends
f63414d519
new g.test, extra unit tests
2018-07-10 12:27:07 +02:00
dr. M.S. (Matthijs) Berends
fc30d3fb13
freq: support for table
2018-07-09 14:02:58 +02:00
dr. M.S. (Matthijs) Berends
18c91786bf
Merge branch 'master' of https://github.com/msberends/AMR
2018-07-08 22:15:31 +02:00
dr. M.S. (Matthijs) Berends
14b990d769
kurtosis, skewness, start with ML
2018-07-08 22:14:55 +02:00
dr. M.S. (Matthijs) Berends
c768ba0d9c
A. lwoffi to A. lwoffii
2018-07-04 17:34:23 +02:00
