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mirror of https://github.com/msberends/AMR.git synced 2024-12-26 16:46:13 +01:00
Commit Graph

175 Commits

Author SHA1 Message Date
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support (#77) 2022-11-13 08:46:10 +01:00
fa620f8ebd fix export of lists in antibiotics and antivirals 2022-10-29 16:17:48 +02:00
afdc48db1e fix txt export of microorganisms 2022-10-29 16:08:18 +02:00
c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
Dr. Matthijs Berends
0d8b098220
Vignette fix 2022-10-05 12:26:50 +02:00
369e7545da and yet another website fix 2022-10-05 10:17:53 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
e7af5fc716 fix AMR vignette 2022-08-28 22:38:08 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
3864ab2fb8 Feather and Parquet files 2022-08-26 22:25:15 +02:00
4da32e3d40 set up Git LFS for large files 2022-08-26 14:02:08 +02:00
bdbc112f99 website update 2022-08-21 17:22:34 +02:00
d6676e9443 disk documentation fix 2022-08-21 16:52:09 +02:00
952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
58ed15e7ac (v1.8.1.9008) website update 2022-05-11 10:26:58 +02:00
08d387b5ce (v1.8.0.9005) as.rsi() fix 2022-03-10 19:33:25 +01:00
d9274bcd0a (v1.7.1.9075) assignment operator 2021-12-14 22:59:27 +01:00
76dee66852 (v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests 2021-12-14 22:39:23 +01:00
bd4bb1d72f (v1.7.1.9073) as.rsi() fix for UTIs 2021-12-14 21:47:14 +01:00
578e7dfee9 (v1.7.1.9070) Better WHONET support 2021-12-13 10:18:28 +01:00
56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
e63defe324 (v1.7.1.9062) website update 2021-12-06 11:12:30 +01:00
694cf5ba77 (v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup 2021-11-28 23:01:26 +01:00
37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
d1b16ce641 (v1.7.1.9048) unit tests 2021-10-04 10:22:10 +02:00
93a4734b44 (v1.7.1.9040) Support for Danish 2021-09-29 12:12:35 +02:00
a2d249962f (v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47 2021-08-16 21:54:34 +02:00
4e1efd902c (v1.7.1.9022) rely on vctrs for ab selectors 2021-07-23 21:42:11 +02:00
16b4c74d44 (v1.7.1.9013) temp fix for ggplot2 bug #4511 2021-07-04 22:10:46 +02:00
bef0f42f66 (v1.7.0.9001) CLSI 2020 guideline 2021-06-01 15:33:06 +02:00
ac73a8d849 v1.7.0 2021-05-24 15:29:17 +02:00
4e0a9533ad (v1.5.0.9041) SNOMED update 2021-03-11 21:42:30 +01:00
0d29bde693 (v1.5.0.9030) as.ab() speed improvement 2021-03-05 10:32:09 +01:00
0e0e3c4ffa (v1.5.0.9029) added missing families and orders 2021-03-05 01:31:46 +01:00
41f94cde97 (v1.5.0.9027) website update 2021-02-26 12:11:29 +01:00
1737d56ae4 (v1.5.0.9026) vignette update, support for GISA 2021-02-25 12:31:12 +01:00
a673407904 (v1.5.0.9025) big plot and ggplot generics update 2021-02-25 10:33:08 +01:00
31ceba5441 (v1.5.0.9024) more speed improvements 2021-02-22 20:21:33 +01:00
0fdabff1ba (v1.5.0.9023) mo properties speed improvement 2021-02-21 23:19:40 +01:00
5ef8cb41a7 (v1.5.0.9021) improve speed of %like% 2021-02-21 20:15:09 +01:00
8fda473e49 (v1.5.0.9015) unit test fix, grouped first isolates 2021-02-04 16:48:16 +01:00
2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
20d638c193 (v1.5.0.9013) updated tibble printing colours 2021-01-28 16:09:30 +01:00
286eaa9699 (v1.5.0.9010) MDRO vignette update, get_episode for < day 2021-01-24 14:48:56 +01:00
1a88caa119 (v1.5.0.9009) unit test fixes 2021-01-22 10:55:07 +01:00