|
|
e5e6d2200d
|
fix add manual ab
|
2022-10-18 22:53:38 +02:00 |
|
|
|
ad68b50ecd
|
custom ab fix
|
2022-10-15 15:20:13 +02:00 |
|
|
|
76bcd3528c
|
move object assignment to AMR_env
|
2022-10-14 13:02:50 +02:00 |
|
|
|
dfae4c7e7d
|
fast-forward from pull
Merge branch 'main' of https://github.com/msberends/AMR into main
# Conflicts:
# DESCRIPTION
# R/add_custom_antimicrobials.R
|
2022-10-11 10:53:51 +02:00 |
|
|
|
33227a5d90
|
support ab selectors for manual AB codes
|
2022-10-11 10:49:55 +02:00 |
|
|
|
57d66cd9d0
|
doc fix
|
2022-10-10 21:38:39 +02:00 |
|
|
|
955f9d7020
|
documentation fix
|
2022-10-10 21:03:39 +02:00 |
|
|
|
3deeedc4b6
|
website fix
|
2022-10-10 20:21:41 +02:00 |
|
|
|
82e3198315
|
add add_custom_antimicrobials()
|
2022-10-10 20:20:39 +02:00 |
|
|
|
4fe90092c7
|
fix for NA in as.ab()
|
2022-10-10 15:44:59 +02:00 |
|
|
|
43c638d122
|
add mo_current()
|
2022-10-10 10:12:08 +02:00 |
|
|
|
b753b84128
|
fix for mo type translation
|
2022-10-06 12:11:51 +02:00 |
|
|
|
b9342d103e
|
fix documentation
|
2022-10-06 11:33:30 +02:00 |
|
|
|
369e7545da
|
and yet another website fix
|
2022-10-05 10:17:53 +02:00 |
|
|
|
bc44da0e38
|
website fix
|
2022-10-05 10:07:27 +02:00 |
|
|
|
def9fc0d75
|
fix website
|
2022-10-05 09:33:21 +02:00 |
|
Dr. Matthijs Berends
|
cd2acc4a29
|
New mo algorithm, prepare for 2.0
|
2022-10-05 09:12:22 +02:00 |
|
|
|
63fe160322
|
new rsi_interpretation_history
|
2022-09-01 15:20:57 +02:00 |
|
|
|
3fca703fbf
|
new AMR distance function
|
2022-08-30 21:48:02 +02:00 |
|
|
|
fbd5d32541
|
small fixes
|
2022-08-29 09:35:36 +02:00 |
|
|
|
e7af5fc716
|
fix AMR vignette
|
2022-08-28 22:38:08 +02:00 |
|
|
|
2ed5f13880
|
Fixes #57
|
2022-08-28 21:13:26 +02:00 |
|
|
|
1e4eaf23f2
|
unit tests
|
2022-08-28 20:49:04 +02:00 |
|
|
|
21b4552f5a
|
unit test fix
|
2022-08-28 20:10:05 +02:00 |
|
|
|
c44ddf272f
|
fix for R <= 3.3
|
2022-08-28 19:34:04 +02:00 |
|
|
|
71db246d5c
|
unit test fix
|
2022-08-28 19:17:12 +02:00 |
|
|
|
f781998904
|
amoxicillin interpretation fix
|
2022-08-28 11:17:53 +02:00 |
|
|
|
4d050aef7c
|
styled, unit test fix
|
2022-08-28 10:31:50 +02:00 |
|
|
|
4cb1db4554
|
data export
|
2022-08-27 20:51:26 +02:00 |
|
|
|
303d61b473
|
new tibble export
|
2022-08-27 20:49:37 +02:00 |
|
|
|
164886f50b
|
new workflow files
|
2022-08-26 23:25:37 +02:00 |
|
|
|
3cef2ea286
|
restore LFS
|
2022-08-26 23:21:31 +02:00 |
|
|
|
3864ab2fb8
|
Feather and Parquet files
|
2022-08-26 22:25:15 +02:00 |
|
|
|
4da32e3d40
|
set up Git LFS for large files
|
2022-08-26 14:02:08 +02:00 |
|
|
|
e05d0365a9
|
website update
|
2022-08-25 19:19:16 +02:00 |
|
|
|
5501cffbb0
|
website update
|
2022-08-25 19:18:48 +02:00 |
|
|
|
d3000a9492
|
website update
|
2022-08-25 19:16:16 +02:00 |
|
|
|
2cbce2cefa
|
website update
|
2022-08-25 19:14:07 +02:00 |
|
|
|
bdbc112f99
|
website update
|
2022-08-21 17:22:34 +02:00 |
|
|
|
d6676e9443
|
disk documentation fix
|
2022-08-21 16:52:09 +02:00 |
|
|
|
952d16de33
|
new, automated website
|
2022-08-21 16:37:20 +02:00 |
|
|
|
7226b70c3d
|
update languages
|
2022-08-20 20:17:14 +02:00 |
|
|
|
ab97268f4c
|
(v1.8.1.9014) add Toxoplasma
|
2022-08-12 23:27:15 +02:00 |
|
|
|
7f981e7778
|
(v1.8.1.9013) add Toxoplasma
|
2022-06-10 13:15:23 +02:00 |
|
|
|
b84d647cac
|
(v1.8.1.9012) update prevalence of some genera
|
2022-06-03 13:28:55 +02:00 |
|
|
|
1b84564d36
|
(v1.8.1.9011) update prevalence of some genera
|
2022-06-03 12:43:25 +02:00 |
|
|
|
70a07bad39
|
(v1.8.1.9010) random when pkg not loaded
|
2022-05-16 12:52:50 +02:00 |
|
|
|
2c5bc73ed6
|
(v1.8.1.9009) random when pkg not loaded
|
2022-05-16 09:29:46 +02:00 |
|
|
|
58ed15e7ac
|
(v1.8.1.9008) website update
|
2022-05-11 10:26:58 +02:00 |
|
|
|
6de5375256
|
(v1.8.1.9007) website update
|
2022-05-11 10:10:31 +02:00 |
|
|
|
859224e9d0
|
(v1.8.1.9006) added EUCAST 2022 and CLSI 2022
|
2022-05-10 21:34:30 +02:00 |
|
|
|
680e8e7a41
|
(v1.8.1.9005) as.rsi() fix for EUCAST
|
2022-05-10 17:01:37 +02:00 |
|
|
|
d4e22069bc
|
(v1.8.1.9004) fix for table() on MICs
|
2022-05-09 21:33:27 +02:00 |
|
|
|
1c891cc90c
|
(v1.8.1.9003) set_mo_source() fix
|
2022-05-09 20:36:44 +02:00 |
|
|
|
152db9d1b5
|
(v1.8.1.9002) fix for table() on MICs
|
2022-05-09 17:08:40 +02:00 |
|
|
|
4754848e96
|
(v1.8.1.9001) update unit tests, fixes #53
|
2022-04-08 11:02:45 +02:00 |
|
|
|
ccb09706e4
|
v1.8.1
|
2022-03-24 23:05:04 +01:00 |
|
|
|
7b0f1596bd
|
(v1.8.0.9010) as.mo improvement
|
2022-03-15 17:35:02 +01:00 |
|
|
|
1b0983e382
|
(v1.8.1) prerelease 1.8.1
|
2022-03-14 16:36:10 +01:00 |
|
|
|
08d387b5ce
|
(v1.8.0.9005) as.rsi() fix
|
2022-03-10 19:33:25 +01:00 |
|
|
|
ad82bb4ce0
|
(v1.8.0.9004) MIC printing in tibbles
|
2022-03-03 21:11:02 +01:00 |
|
|
|
dedbe92322
|
(v1.8.0.9003) deps update
|
2022-03-02 23:16:37 +01:00 |
|
|
|
3b2b2be5f8
|
(v1.8.0.9002) as.rsi() cleanup, more informative warnings
|
2022-03-02 15:38:55 +01:00 |
|
|
|
18e8525d10
|
(v1.8.0.9001) as.mo improvement, fixes #52
|
2022-02-26 21:58:23 +01:00 |
|
|
|
be792cc9eb
|
(v1.8.0.9000) unit tests for R 3.3
|
2022-02-01 17:08:10 +01:00 |
|
|
|
25cef46c59
|
(v1.8.0) prerelease 1.8.0
|
2021-12-23 18:56:28 +01:00 |
|
|
|
75dac113b6
|
(v1.7.1.9077) skimr support only for newer R versions
|
2021-12-23 13:38:25 +01:00 |
|
|
|
d9274bcd0a
|
(v1.7.1.9075) assignment operator
|
2021-12-14 22:59:27 +01:00 |
|
|
|
76dee66852
|
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
|
2021-12-14 22:39:23 +01:00 |
|
|
|
bd4bb1d72f
|
(v1.7.1.9073) as.rsi() fix for UTIs
|
2021-12-14 21:47:14 +01:00 |
|
|
|
5eef01165e
|
(v1.7.1.9072) as.rsi() fix for UTIs
|
2021-12-14 12:33:29 +01:00 |
|
|
|
0cbf8f48b6
|
(v1.7.1.9071) rsi disk fix
|
2021-12-13 11:57:34 +01:00 |
|
|
|
578e7dfee9
|
(v1.7.1.9070) Better WHONET support
|
2021-12-13 10:18:28 +01:00 |
|
|
|
f90e27c1b0
|
(v1.7.1.9069) CLSI 2021 support
|
2021-12-12 11:36:58 +01:00 |
|
|
|
1e66a3daf3
|
(v1.7.1.9068) new logo, unit tests
|
2021-12-12 11:07:02 +01:00 |
|
|
|
56f1ce328a
|
(v1.7.1.9067) Support for Swedish and Russian
|
2021-12-12 09:42:03 +01:00 |
|
|
|
5b5f70a103
|
(v1.7.1.9066) mdro EUCAST v3.3
|
2021-12-11 15:29:30 +01:00 |
|
|
|
e0a2634f14
|
(v1.7.1.9065) unit tests
|
2021-12-11 15:13:44 +01:00 |
|
|
|
77ba4318ea
|
(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
|
2021-12-11 13:41:31 +01:00 |
|
|
|
e18c49ed93
|
(v1.7.1.9063) not_intrinsic_resistant
|
2021-12-09 10:48:25 +01:00 |
|
|
|
e63defe324
|
(v1.7.1.9062) website update
|
2021-12-06 11:12:30 +01:00 |
|
|
|
1fa3fc6af2
|
(v1.7.1.9061) bugfix set_ab_names
|
2021-12-05 23:21:59 +01:00 |
|
|
|
75965124ef
|
(v1.7.1.9060) bugfix set_ab_names
|
2021-12-05 23:11:10 +01:00 |
|
|
|
b747036deb
|
(v1.7.1.9059) bugfix set_ab_names
|
2021-12-05 22:59:06 +01:00 |
|
|
|
7965468ccd
|
(v1.7.1.9058) vars selection for set_ab_names()
|
2021-12-05 22:06:45 +01:00 |
|
|
|
3abe61fd61
|
(v1.7.1.9057) NAs in get_episode()
|
2021-12-02 13:32:14 +01:00 |
|
|
|
5375f75829
|
(v1.7.1.9056) unit tests
|
2021-11-29 11:55:18 +01:00 |
|
|
|
c8698347cb
|
(v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers
|
2021-11-29 10:38:38 +01:00 |
|
|
|
694cf5ba77
|
(v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup
|
2021-11-28 23:01:26 +01:00 |
|
|
|
9a2c431e16
|
(v1.7.1.9053) fortify() methods
|
2021-11-01 13:51:13 +01:00 |
|
|
|
91149d6d35
|
(v1.7.1.9052) eucast-update
|
2021-10-06 16:22:36 +02:00 |
|
|
|
37e6e35ec4
|
(v1.7.1.9051) updated taxonomy, updated git branch name
|
2021-10-06 13:23:57 +02:00 |
|
|
|
8f5e5a3fc2
|
(v1.7.1.9050) fix for as.mo
|
2021-10-05 14:00:35 +02:00 |
|
|
|
2bcf28281d
|
(v1.7.1.9049) unit tests
|
2021-10-05 09:58:08 +02:00 |
|
|
|
d1b16ce641
|
(v1.7.1.9048) unit tests
|
2021-10-04 10:22:10 +02:00 |
|
|
|
9b97233be2
|
(v1.7.1.9046) unit tests
|
2021-10-03 13:50:52 +02:00 |
|
|
|
b0c84cce9c
|
(v1.7.1.9045) unit tests
|
2021-09-29 20:24:02 +02:00 |
|
|
|
557ce74fd7
|
(v1.7.1.9044) unit tests
|
2021-09-29 20:13:52 +02:00 |
|
|
|
45f597cac5
|
(v1.7.1.9043) unit tests
|
2021-09-29 20:10:44 +02:00 |
|
|
|
e8d3ce05d7
|
(v1.7.1.9041) new GH actions, branches rename
|
2021-09-29 16:36:03 +02:00 |
|
|
|
93a4734b44
|
(v1.7.1.9040) Support for Danish
|
2021-09-29 12:12:35 +02:00 |
|
|
|
5f433d6e5c
|
(v1.7.1.9039) reinitiate all units tests
|
2021-09-03 13:08:36 +02:00 |
|
|
|
81a1a432bd
|
(v1.7.1.9038) dplyr grouping fix on windows?
|
2021-09-01 16:52:55 +02:00 |
|
|
|
bcab74fb6d
|
(v1.7.1.9037) dplyr grouping fix on windows?
|
2021-08-31 17:06:44 +02:00 |
|
|
|
953dfac9e5
|
(v1.7.1.9036) dplyr grouping fix on windows?
|
2021-08-30 16:49:46 +02:00 |
|
|
|
986bd826ee
|
(v1.7.1.9035) dplyr grouping fix on windows?
|
2021-08-30 15:43:12 +02:00 |
|
|
|
1daa117e9f
|
(v1.7.1.9033) dplyr grouping fix on windows?
|
2021-08-30 15:01:32 +02:00 |
|
|
|
6ca6a3f6df
|
(v1.7.1.9032) dplyr grouping fix on windows?
|
2021-08-30 14:17:27 +02:00 |
|
|
|
e6ce25162e
|
(v1.7.1.9031) dplyr grouping fix on windows?
|
2021-08-30 14:07:46 +02:00 |
|
|
|
d6a916d70b
|
(v1.7.1.9030) unit test
|
2021-08-29 23:50:45 +02:00 |
|
|
|
f0a4d29fe0
|
(v1.7.1.9029) unit test fix
|
2021-08-21 10:20:05 +02:00 |
|
|
|
e4de7f5055
|
(v1.7.1.9028) fix unit test
|
2021-08-20 00:08:31 +02:00 |
|
|
|
41f35c73cd
|
(v1.7.1.9027) fix unit test
|
2021-08-19 23:56:18 +02:00 |
|
|
|
2ab21b7af3
|
(v1.7.1.9026) updated DDDs
|
2021-08-19 23:43:02 +02:00 |
|
|
|
1b62bab007
|
(v1.7.1.9025) unit tests
|
2021-08-18 23:19:38 +02:00 |
|
|
|
a44283f998
|
(v1.7.1.9024) unit tests
|
2021-08-17 14:34:11 +02:00 |
|
|
|
a2d249962f
|
(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
|
2021-08-16 21:54:34 +02:00 |
|
|
|
4e1efd902c
|
(v1.7.1.9022) rely on vctrs for ab selectors
|
2021-07-23 21:42:11 +02:00 |
|
|
|
0ec81cc12e
|
(v1.7.1.9021) autoplot generics
|
2021-07-12 22:12:28 +02:00 |
|
|
|
6838f03bde
|
(v1.7.1.9020) autoplot generics
|
2021-07-12 20:24:49 +02:00 |
|
|
|
fc946564d1
|
(v1.7.1.9019) Morganella MIC in EUCAST 2021
|
2021-07-12 12:28:41 +02:00 |
|
|
|
5ccb330b42
|
(v1.7.1.9018) translation fix
|
2021-07-11 13:20:45 +02:00 |
|
|
|
39d97ab53b
|
(v1.7.1.9017) ab selector error
|
2021-07-08 23:05:45 +02:00 |
|
|
|
b228eb1536
|
(v1.7.1.9016) only_treatable ab selectors
|
2021-07-08 22:23:28 +02:00 |
|
|
|
625a6fb304
|
(v1.7.1.9015) removed S3 taxonomic_name again
|
2021-07-07 20:34:05 +02:00 |
|
|
|
ad10693a1a
|
(v1.7.1.9014) rep() for S3 classes
|
2021-07-06 16:35:14 +02:00 |
|
|
|
16b4c74d44
|
(v1.7.1.9013) temp fix for ggplot2 bug #4511
|
2021-07-04 22:10:46 +02:00 |
|
|
|
350dbe6a11
|
(v1.7.1.9012) update unit tests
|
2021-07-04 20:25:30 +02:00 |
|
|
|
5b5741f681
|
(v1.7.1.9011) subsetting taxonomy fix
|
2021-07-04 15:26:50 +02:00 |
|
|
|
3bd50710e8
|
(v1.7.1.9010) fix for count_* and proportion_*
|
2021-07-04 12:00:41 +02:00 |
|
|
|
3e26929838
|
(v1.7.1.9009) fix for ab class selectors
|
2021-07-03 21:56:53 +02:00 |
|
|
|
c8491d07f8
|
(v1.7.1.9008) unit tests
|
2021-06-23 10:19:38 +02:00 |
|
|
|
95050ee3e0
|
(v1.7.1.9007) Updated antibiotics dataset, fixes #41
|
2021-06-23 10:03:17 +02:00 |
|
|
|
1dc9d237f6
|
(v1.7.1.9006) unit tests
|
2021-06-22 13:09:41 +02:00 |
|
|
|
d04e83f494
|
(v1.7.1.9005) ab class selectors for R-3.0 and R-3.1
|
2021-06-22 12:16:42 +02:00 |
|
|
|
c44d9392ca
|
(v1.7.1.9004) more extensive unit tests
|
2021-06-15 10:51:04 +02:00 |
|
|
|
556bf0014d
|
(v1.7.1.9003) unit test
|
2021-06-14 22:37:05 +02:00 |
|
|
|
99be4c7e7e
|
(v1.7.1.9002) ab class selectors update
|
2021-06-14 22:04:04 +02:00 |
|
|
|
683a0e748a
|
(v1.7.1.9001) unit tests
|
2021-06-05 15:12:01 +02:00 |
|
|
|
1908e7cc7a
|
(v1.7.1.9000) ab_class update, unit tests
|
2021-06-04 21:07:55 +02:00 |
|
|
|
7e70403efb
|
(v1.7.1) New CRAN release
|
2021-06-03 15:19:21 +02:00 |
|
|
|
279376fccb
|
(v1.7.0.9002) old MO codes
|
2021-06-01 16:36:33 +02:00 |
|
|
|
bef0f42f66
|
(v1.7.0.9001) CLSI 2020 guideline
|
2021-06-01 15:33:06 +02:00 |
|
|
|
f406319503
|
(v1.7.0.9000) package size
|
2021-05-30 22:14:38 +02:00 |
|
|
|
ac73a8d849
|
v1.7.0
|
2021-05-24 15:29:17 +02:00 |
|
|
|
e5599bc694
|
(v1.6.0.9065) unit tests
|
2021-05-24 11:01:32 +02:00 |
|
|
|
4fbf9e1720
|
(v1.6.0.9064) prepare new release
|
2021-05-24 09:34:08 +02:00 |
|
|
|
a13fd98e8b
|
(v1.6.0.9063) prepare new release
|
2021-05-24 09:00:11 +02:00 |
|
|
|
06302d296a
|
(v1.6.0.9062) code consistency
|
2021-05-24 00:06:28 +02:00 |
|
|
|
07939b1a14
|
(v1.6.0.9061) age() update
|
2021-05-23 23:11:16 +02:00 |
|
|
|
fa2f5214b9
|
(v1.6.0.9060) unit tests
|
2021-05-22 10:05:59 +02:00 |
|
|
|
0b1f59edec
|
(v1.6.0.9058) unit tests
|
2021-05-22 08:58:51 +02:00 |
|
|
|
65a8b58aa6
|
(v1.6.0.9056) support codecov again
|
2021-05-21 20:30:48 +02:00 |
|
|
|
b210f1327c
|
(v1.6.0.9055) support codecov again
|
2021-05-21 20:20:51 +02:00 |
|
|
|
fecc5d183c
|
(v1.6.0.9054) unit tests
|
2021-05-20 15:06:08 +02:00 |
|
|
|
69a656abc0
|
(v1.6.0.9053) unit tests
|
2021-05-20 13:42:17 +02:00 |
|
|
|
4a2a48b7c1
|
(v1.6.0.9052) unit tests
|
2021-05-20 11:42:39 +02:00 |
|
|
|
04ef5b28e7
|
(v1.6.0.9050) printing NA in custom_eucast_rules()
|
2021-05-20 10:10:40 +02:00 |
|
|
|
9a2879cba9
|
(v1.6.0.9049) unit tests
|
2021-05-20 00:07:27 +02:00 |
|
|
|
2413efd5c1
|
(v1.6.0.9048) ab selectors overhaul
|
2021-05-19 22:55:42 +02:00 |
|
|
|
6920c0be41
|
(v1.6.0.9047) filter_ab_class() fixes
|
2021-05-18 11:29:31 +02:00 |
|
|
|
cfb7df823e
|
(v1.6.0.9044) betalactams() selector
|
2021-05-18 00:53:04 +02:00 |
|
|
|
be49131ed7
|
(v1.6.0.9043) translation update
|
2021-05-17 19:43:01 +02:00 |
|
|
|
83fec69a03
|
(v1.6.0.9042) translation update
|
2021-05-17 11:26:12 +02:00 |
|
|
|
916df6e90c
|
(v1.6.0.9041) filter_ab_class() fix
|
2021-05-16 10:50:00 +02:00 |
|
|
|
00496e45b7
|
(v1.6.0.9040) unit tests
|
2021-05-16 09:25:36 +02:00 |
|
|
|
229e1bb407
|
(v1.6.0.9035) unit tests
|
2021-05-15 22:55:12 +02:00 |
|
|
|
86736ab9a7
|
(v1.6.0.9032) unit tests
|
2021-05-15 21:54:56 +02:00 |
|
|
|
d8c91d5876
|
(v1.6.0.9031) tinytest unit tests
|
2021-05-15 21:36:22 +02:00 |
|
|
|
9a381c8d18
|
(v1.6.0.9030) new unit test flow
|
2021-05-13 23:07:31 +02:00 |
|
|
|
9ed2f6490f
|
(v1.6.0.9028) new unit test flow
|
2021-05-13 22:44:11 +02:00 |
|
|
|
5b9fb8daf4
|
(v1.6.0.9027) new unit test flow
|
2021-05-13 21:54:15 +02:00 |
|
|
|
b1d942be91
|
(v1.6.0.9026) new unit test flow
|
2021-05-13 21:16:22 +02:00 |
|
|
|
994d157aa6
|
(v1.6.0.9025) unit test update
|
2021-05-13 20:53:56 +02:00 |
|
|
|
9d9d62eba4
|
(v1.6.0.9024) unit test update
|
2021-05-13 20:49:47 +02:00 |
|
|
|
aeea00881e
|
(v1.6.0.9023) new unit test flow
|
2021-05-13 19:31:47 +02:00 |
|
|
|
655b813e99
|
(v1.6.0.9022) unit test fix
|
2021-05-13 15:56:12 +02:00 |
|
|
|
29dbfa2f49
|
(v1.6.0.9021) join functions update
|
2021-05-12 18:15:03 +02:00 |
|
|
|
3319fbae58
|
(v1.6.0.9020) fix for skimr in dplyr 1.0.6
|
2021-05-06 15:17:11 +02:00 |
|
|
|
5899678b74
|
(v1.6.0.9019) website fix
|
2021-05-05 15:47:39 +02:00 |
|
|
|
0aca719929
|
(v1.6.0.9018) unit tests
|
2021-05-04 15:20:43 +02:00 |
|
|
|
5679ccdaf9
|
(v1.6.0.9017) extra system codes
|
2021-05-04 12:47:33 +02:00 |
|
|
|
f33e61bac7
|
(v1.6.0.9016) website update and c() fixes
|
2021-05-03 13:06:43 +02:00 |
|
|
|
12a8d59869
|
(v1.6.0.9015) italicise_taxonomy
|
2021-05-03 10:47:32 +02:00 |
|
|
|
e405de079c
|
(v1.6.0.9014) as.rsi() for numeric values
|
2021-04-30 13:18:48 +02:00 |
|
|
|
a9fd4aa49f
|
(v1.6.0.9013) website update
|
2021-04-29 17:16:30 +02:00 |
|
|
|
5e06b20d43
|
(v1.6.0.9012) unit tests
|
2021-04-27 11:28:17 +02:00 |
|
|
|
c5fff1c95c
|
(v1.6.0.9011) unit tests
|
2021-04-27 10:27:13 +02:00 |
|
|
|
93683a4ae2
|
(v1.6.0.9010) big first_isolate() update
|
2021-04-26 23:57:37 +02:00 |
|
|
|
5f9e7bd3ee
|
(v1.6.0.9009) key_antibiotics update
|
2021-04-23 16:13:26 +02:00 |
|
|
|
70b803dbb6
|
(v1.6.0.9008) unlike, bugfix for col_mo naming
|
2021-04-23 09:59:36 +02:00 |
|
|
|
c6289c3fc3
|
(v1.6.0.9007) documentation custom eucast rules, progress bar as.mo
|
2021-04-20 10:46:17 +02:00 |
|
|
|
de66eccf43
|
(v1.6.0.9006) eucast rules fix for Ochrobactrum anthropi
|
2021-04-16 14:59:57 +02:00 |
|
|
|
24ac18a99d
|
(v1.6.0.9005) unit test fix
|
2021-04-16 13:24:59 +02:00 |
|
|
|
9842ef9660
|
(v1.6.0.9004) unit test fix
|
2021-04-16 12:02:57 +02:00 |
|
|
|
00d3e437a8
|
(v1.6.0.9003) like() fix
|
2021-04-16 11:41:05 +02:00 |
|
|
|
d277d58475
|
(v1.6.0.9002) R-3.0 installation fix
|
2021-04-12 14:24:40 +02:00 |
|
|
|
6ff5448192
|
(v1.6.0.9001) support Inf for episodes
|
2021-04-12 12:35:13 +02:00 |
|
|
|
7a3139f7cc
|
(v1.6.0.9000) custom EUCAST rules
|
2021-04-07 08:37:42 +02:00 |
|
|
|
551f99dc8f
|
v1.6.0
|
2021-03-15 07:23:21 +01:00 |
|
|
|
4e0a9533ad
|
(v1.5.0.9041) SNOMED update
|
2021-03-11 21:42:30 +01:00 |
|
|
|
8d6ceb6a15
|
(v1.5.0.9040) removal of isolate_identifier
|
2021-03-08 09:44:17 +01:00 |
|
|
|
a7c9b4c295
|
(v1.5.0.9039) handle first isolates for missing antibiograms
|
2021-03-08 02:38:32 +01:00 |
|
|
|
450bbe5fb7
|
(v1.5.0.9034) unit test fix
|
2021-03-07 21:16:45 +01:00 |
|
|
|
1bbf409fe5
|
(v1.5.0.9033) as.rsi fix
|
2021-03-07 16:15:43 +01:00 |
|
|
|
850c123de7
|
(v1.5.0.9032) All group generics for MICs
|
2021-03-07 13:52:39 +01:00 |
|
|
|
91dd755cac
|
(v1.5.0.9031) math processing of MICs
|
2021-03-05 15:36:39 +01:00 |
|
|
|
0d29bde693
|
(v1.5.0.9030) as.ab() speed improvement
|
2021-03-05 10:32:09 +01:00 |
|
|
|
0e0e3c4ffa
|
(v1.5.0.9029) added missing families and orders
|
2021-03-05 01:31:46 +01:00 |
|
|
|
ddf88345f1
|
(v1.5.0.9028) Updated taxonomy until March 2021
|
2021-03-04 23:28:32 +01:00 |
|
|
|
41f94cde97
|
(v1.5.0.9027) website update
|
2021-02-26 12:11:29 +01:00 |
|
|
|
1737d56ae4
|
(v1.5.0.9026) vignette update, support for GISA
|
2021-02-25 12:31:12 +01:00 |
|
|
|
a673407904
|
(v1.5.0.9025) big plot and ggplot generics update
|
2021-02-25 10:33:08 +01:00 |
|
|
|
31ceba5441
|
(v1.5.0.9024) more speed improvements
|
2021-02-22 20:21:33 +01:00 |
|
|
|
0fdabff1ba
|
(v1.5.0.9023) mo properties speed improvement
|
2021-02-21 23:19:40 +01:00 |
|
|
|
062c49fca1
|
(v1.5.0.9022) mo properties speed improvement
|
2021-02-21 22:56:35 +01:00 |
|
|
|
5ef8cb41a7
|
(v1.5.0.9021) improve speed of %like%
|
2021-02-21 20:15:09 +01:00 |
|
|
|
daa12ced2c
|
(v1.5.0.9020) translation fix
|
2021-02-18 23:23:14 +01:00 |
|
|
|
601ea7377c
|
(v1.5.0.9019) use functions without loading AMR pkg
|
2021-02-17 10:58:13 +01:00 |
|
|
|
2dd0656355
|
(v1.5.0.9018) fix unit tests
|
2021-02-09 12:28:15 +01:00 |
|
|
|
cb404492b2
|
(v1.5.0.9017) unit testing
|
2021-02-08 21:09:36 +01:00 |
|
|
|
4a84894f79
|
(v1.5.0.9016) only_rsi_columns update, documentation
|
2021-02-08 14:18:42 +01:00 |
|
|
|
8fda473e49
|
(v1.5.0.9015) unit test fix, grouped first isolates
|
2021-02-04 16:48:16 +01:00 |
|
|
|
2eca8c3f01
|
(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
|
2021-02-02 23:57:35 +01:00 |
|
|
|
20d638c193
|
(v1.5.0.9013) updated tibble printing colours
|
2021-01-28 16:09:30 +01:00 |
|
|
|
331c1f6508
|
(v1.5.0.9012) ampc_cephalosporin_resistance for I
|
2021-01-25 21:58:00 +01:00 |
|
|
|
24eb4453db
|
(v1.5.0.9011) small dosage update
|
2021-01-24 23:27:11 +01:00 |
|
|
|
286eaa9699
|
(v1.5.0.9010) MDRO vignette update, get_episode for < day
|
2021-01-24 14:48:56 +01:00 |
|
|
|
1a88caa119
|
(v1.5.0.9009) unit test fixes
|
2021-01-22 10:55:07 +01:00 |
|
|
|
1ba44776a1
|
(v1.5.0.9008) Internal data sets to pkg, speed for auto col determination
|
2021-01-22 10:20:41 +01:00 |
|
|
|
27f084d819
|
(v1.5.0.9007) updated unit tests
|
2021-01-18 18:45:43 +01:00 |
|
|
|
4eab095306
|
(v1.5.0.9006) major documentation update
|
2021-01-18 16:57:56 +01:00 |
|
|
|
e95218c0d1
|
(v1.5.0.9005) custom MDRO guideline
|
2021-01-17 10:35:21 +01:00 |
|
|
|
e699de955c
|
(v1.5.0.9004) custom MDRO guideline
|
2021-01-17 00:26:48 +01:00 |
|
|
|
7ebc534ccd
|
(v1.5.0.9003) verbose output of mdro()
|
2021-01-15 22:44:52 +01:00 |
|
|
|
6745f3fb17
|
(v1.5.0.9002) doc update
|
2021-01-14 15:51:41 +01:00 |
|
|
|
bc00470dca
|
(v1.5.0.9001) more informative argument errors
|
2021-01-14 14:41:44 +01:00 |
|
|
|
d014955ce0
|
(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
|
2021-01-12 22:08:04 +01:00 |
|
|
|
3b84b8be75
|
v1.5.0
|
2021-01-06 11:16:17 +01:00 |
|
|
|
1563dcd1aa
|
(v1.4.0.9062) unit test fix
|
2021-01-04 14:46:17 +01:00 |
|
|
|
a7ea4c9d2f
|
(v1.4.0.9061) ab class selector fix
|
2021-01-04 14:16:09 +01:00 |
|
|
|
8d117820b8
|
(v1.4.0.9060) ab class selector fix
|
2021-01-04 13:39:06 +01:00 |
|
|
|
c9de74c81a
|
(v1.4.0.9059) ab class selector fix
|
2021-01-04 12:29:25 +01:00 |
|
|
|
82cfa24ea4
|
(v1.4.0.9058) GH actions update
|
2021-01-04 11:27:37 +01:00 |
|
|
|
daac96fefe
|
(v1.4.0.9057) GH actions update
|
2021-01-04 09:49:42 +01:00 |
|
|
|
63a4dda467
|
(v1.4.0.9056) subsetting ab class selectors for base R
|
2021-01-03 23:40:05 +01:00 |
|
|
|
ecac443f86
|
(v1.4.0.9055) more unit tests
|
2020-12-31 13:44:58 +01:00 |
|
|
|
10dec96058
|
(v1.4.0.9054) unit test update
|
2020-12-29 22:06:01 +01:00 |
|
|
|
d3f007bf65
|
(v1.4.0.9053) unit test old R versions
|
2020-12-29 21:23:01 +01:00 |
|
|
|
526f8afb08
|
(v1.4.0.9052) replaced all sapply's with type-safe vapply's
|
2020-12-28 22:24:33 +01:00 |
|
|
|
ccf13dd6c0
|
(v1.4.0.9051) ab class
|
2020-12-27 23:19:41 +01:00 |
|
|
|
afc325c314
|
(v1.4.0.9050) ab selectors base R
|
2020-12-27 20:32:40 +01:00 |
|
|
|
175e33abba
|
(v1.4.0.9049) unit tests
|
2020-12-27 15:07:01 +01:00 |
|
|
|
ed198916bf
|
(v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants
|
2020-12-27 14:23:11 +01:00 |
|
|
|
8b52f9b1be
|
(v1.4.0.9047) unit tests
|
2020-12-27 00:30:28 +01:00 |
|
|
|
acbd0cf7ca
|
(v1.4.0.9046) get_episode
|
2020-12-27 00:07:00 +01:00 |
|
|
|
291f802be3
|
(v1.4.0.9045) unit tests
|
2020-12-25 00:06:11 +01:00 |
|
|
|
df37584189
|
(v1.4.0.9044) mo tibble printing, mo_shortname() fix
|
2020-12-24 23:29:10 +01:00 |
|
|
|
128ebcfd62
|
(v1.4.0.9043) documentation update
|
2020-12-22 00:51:17 +01:00 |
|
|
|
ee70883246
|
(v1.4.0.9042) auto dark theme website
|
2020-12-21 22:46:29 +01:00 |
|
|
|
81af41da3a
|
(v1.4.0.9041) updates based on review
|
2020-12-17 16:22:25 +01:00 |
|
|
|
1faa816090
|
(v1.4.0.9040) LA-MRSA / CA-MRSA
|
2020-12-16 16:18:53 +01:00 |
|
|
|
203bc20eb0
|
(v1.4.0.9039) more unit tests
|
2020-12-13 20:44:32 +01:00 |
|
|
|
ac22b8d5c1
|
(v1.4.0.9038) docu update
|
2020-12-13 13:44:04 +01:00 |
|
|
|
c8bcecf232
|
(v1.4.0.9037) random_* functions
|
2020-12-12 23:17:29 +01:00 |
|
|
|
2edd3339db
|
(v1.4.0.9036) more unit tests
|
2020-12-11 12:17:23 +01:00 |
|
|
|
23ddc6004b
|
(v1.4.0.9035) eucast_rules fix
|
2020-12-11 09:05:03 +01:00 |
|
|
|
c9fc7e8a45
|
(v1.4.0.9034) MIC printing update
|
2020-12-09 09:40:50 +01:00 |
|
|
|
2145f1d1ba
|
(v1.4.0.9033) documentation update
|
2020-12-08 12:37:25 +01:00 |
|
|
|
1bdb136b3a
|
(v1.4.0.9032) auto-data guessing for functions
|
2020-12-07 16:06:42 +01:00 |
|
|
|
fdf29e6c5b
|
(v1.4.0.9031) as.ab() fix
|
2020-12-03 22:30:14 +01:00 |
|
|
|
e03b3c96d3
|
(v1.4.0.9030) as.mo() fix for known lab codes
|
2020-12-03 16:59:04 +01:00 |
|
|
|
4c114ff4b4
|
(v1.4.0.9029) grey background for backticks, like readr pkg
|
2020-12-01 16:59:57 +01:00 |
|
|
|
0e1fdb7dd7
|
(v1.4.0.9027) docu update
|
2020-11-25 20:26:02 +01:00 |
|
|
|
7b42b15c90
|
(v1.4.0.9026) docu update
|
2020-11-24 11:47:54 +01:00 |
|
|
|
b045b571a6
|
(v1.4.0.9025) is_new_episode()
|
2020-11-23 21:50:27 +01:00 |
|
|
|
363218da7e
|
(v1.4.0.9024) is_new_episode()
|
2020-11-17 16:57:41 +01:00 |
|
|
|
0800d33228
|
(v1.4.0.9023) unit tests
|
2020-11-17 11:53:56 +01:00 |
|
|
|
93428415d0
|
(v1.4.0.9022) small bugfix
|
2020-11-16 20:02:20 +01:00 |
|
|
|
deefce9520
|
(v1.4.0.9021) more robust class setting
|
2020-11-16 16:57:55 +01:00 |
|
|
|
05fb213a7c
|
(v1.4.0.9020) mo_is_intrinsic_resistant
|
2020-11-16 11:03:24 +01:00 |
|
|
|
9666b78ea7
|
(v1.4.0.9019) documentation update
|
2020-11-12 11:07:23 +01:00 |
|
|
|
f2edac3b67
|
(v1.4.0.9018) reference_data in as.rsi()
|
2020-11-11 18:54:03 +01:00 |
|
|
|
01d9522434
|
(v1.4.0.9017) stringsAsFactors definitions
|
2020-11-11 16:49:27 +01:00 |
|
|
|
68ac39aa7f
|
(v1.4.0.9016) as.rsi() older R versions
|
2020-11-10 19:59:14 +01:00 |
|
|
|
15c732703d
|
(v1.4.0.9015) bugfix
|
2020-11-10 16:35:56 +01:00 |
|
|
|
dd5a0319ef
|
(v1.4.0.9014) bugfix
|
2020-11-09 15:18:36 +01:00 |
|
|
|
d3b1d33210
|
(v1.4.0.9013) is_gram_negative/positive update
|
2020-11-09 13:07:02 +01:00 |
|
|
|
423879c034
|
(v1.4.0.9012) reference_df fix
|
2020-11-05 01:11:49 +01:00 |
|
|
|
5a607abb36
|
(v1.4.0.9011) message formatting
|
2020-10-27 15:56:51 +01:00 |
|
|
|
3d096d96c2
|
(v1.4.0.9009) bugfix for older R version
|
2020-10-26 15:53:31 +01:00 |
|
|
|
760d69a3e0
|
(v1.4.0.9008) like variations
|
2020-10-26 12:23:03 +01:00 |
|
|
|
f720c9ba0b
|
(v1.4.0.9007) bugfix
|
2020-10-21 15:28:48 +02:00 |
|
|
|
8f868388ce
|
(v1.4.0.9006) bugfix
|
2020-10-21 14:40:00 +02:00 |
|
|
|
9109b9dd62
|
(v1.4.0.9005) bugfix
|
2020-10-21 13:07:23 +02:00 |
|
|
|
ade9f8bafd
|
(v1.4.0.9004) bugfix
|
2020-10-21 11:50:43 +02:00 |
|
|
|
2ef7dfc8a3
|
(v1.4.0.9003) CoNS update
|
2020-10-20 21:00:57 +02:00 |
|
|
|
ddae8085e1
|
(v1.4.0.9002) bugfix
|
2020-10-19 20:44:45 +02:00 |
|
|
|
4e9ccb4435
|
(v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening
|
2020-10-19 17:09:19 +02:00 |
|
|
|
833a1be36d
|
(v1.4.0.9000) more extensive unit tests
|
2020-10-15 09:46:41 +02:00 |
|
