|
|
7cda9e575b
|
prepare for CRAN
|
2023-10-20 14:51:48 +02:00 |
|
|
|
7a4628b73f
|
Added C. freundii complex and Y. pseudotuberculosis complex
|
2023-07-14 10:49:06 +02:00 |
|
|
|
e1b4f99f4f
|
breakpoints fixes
|
2023-07-12 15:20:04 +01:00 |
|
|
|
0c46f61260
|
MO group fixes
|
2023-07-12 15:04:48 +01:00 |
|
|
|
7cd9ca274c
|
add strep groups to ABCG
|
2023-07-12 11:41:25 +01:00 |
|
|
|
5e1221bceb
|
unit test
|
2023-07-10 19:04:12 +02:00 |
|
|
|
70c601ca11
|
breakpoints UTI interpretation fix
|
2023-07-10 13:41:52 +02:00 |
|
|
|
acb534102b
|
new species groups, updated clinical breakpoints
|
2023-07-08 17:30:05 +02:00 |
|
|
|
2d97cca6d9
|
fix reference_df endless loop
|
2023-06-26 13:52:02 +02:00 |
|
Dr. Matthijs Berends
|
f065945d7b
|
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
|
2023-06-22 15:10:59 +02:00 |
|
|
|
9591688811
|
documentation update
|
2023-05-27 10:39:22 +02:00 |
|
|
|
8179092c57
|
add XPT files for SAS software
|
2023-05-12 10:07:55 +02:00 |
|
|
|
91fa73dedf
|
add oxygen tolerance
|
2023-05-11 21:56:27 +02:00 |
|
|
|
bf08d136a0
|
fix coercing NA to custom codes, fixes #107
|
2023-05-08 13:04:18 +02:00 |
|
|
|
9148a2dcf4
|
fix mo_rank() for 'unknown' MOs
|
2023-04-20 15:20:41 +02:00 |
|
|
|
02322ac2ee
|
Fix PK/PD breakpoints
|
2023-04-19 00:31:31 +02:00 |
|
|
|
cabffb22fd
|
anaerobic codes
|
2023-04-17 11:26:19 +02:00 |
|
|
|
1a02d302d4
|
Fix translatable strings
|
2023-04-15 09:32:13 +02:00 |
|
|
|
ed70f95380
|
Fix clinical breakpoints
|
2023-04-14 23:14:34 +02:00 |
|
|
|
147f9112e9
|
Fix some WHONET codes
|
2023-04-14 11:12:26 +02:00 |
|
|
|
c28cfa3a77
|
fix documentation
|
2023-03-16 08:55:37 +01:00 |
|
|
|
262598b8d7
|
support for old rsi arguments
|
2023-03-11 14:24:34 +01:00 |
|
|
|
4416394e10
|
website update
|
2023-02-26 21:26:58 +01:00 |
|
|
|
2c5a9bb622
|
new relative episode determination in get_episode(), fix for plotting disk/MIC values
|
2023-02-24 17:06:30 +01:00 |
|
|
|
049baf0a71
|
fix for antibiograms on R < 3.5
|
2023-02-24 09:43:10 +01:00 |
|
|
|
e70f2cd32c
|
knitr format
|
2023-02-23 16:27:40 +01:00 |
|
|
|
dad25302f2
|
make rsi work in more cases, documentation update
|
2023-02-22 14:38:57 +01:00 |
|
|
|
45a9697c84
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
|
|
|
c51fb24363
|
pm_bind_rows
|
2023-02-11 22:28:48 +01:00 |
|
|
|
b146de6d7f
|
fix for bind_rows2, added 4 langs
|
2023-02-11 21:57:12 +01:00 |
|
|
|
bc434db835
|
bring back antibiogram(), without deps
|
2023-02-10 16:18:00 +01:00 |
|
|
|
aa48c6bf53
|
pm fixes
|
2023-02-08 16:51:41 +01:00 |
|
|
|
822e9de82c
|
pm update, unit test fix?
|
2023-02-08 13:48:06 +01:00 |
|
|
|
9e99e66f01
|
use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
|
2023-02-06 11:57:22 +01:00 |
|
|
|
19fd0ef121
|
sort sir history
|
2023-01-23 15:01:21 +01:00 |
|
Dr. Matthijs Berends
|
98e62c9af2
|
Replace RSI with SIR
|
2023-01-21 23:47:20 +01:00 |
|
|
|
4801a6067e
|
unit tests
|
2023-01-06 11:22:02 +01:00 |
|
|
|
a98d0d75ea
|
styler dep
|
2023-01-05 14:46:44 +01:00 |
|
|
|
f619fb683b
|
support new mo codes
|
2022-12-27 15:16:15 +01:00 |
|
|
|
6f4bb603ec
|
unit tests
|
2022-12-20 22:18:50 +01:00 |
|
|
|
f0a2cdbf5e
|
update mo algorithm
|
2022-12-20 16:14:04 +01:00 |
|
|
|
b1b7534c78
|
incorporate Bartlett et al (2022)
|
2022-12-19 15:32:41 +01:00 |
|
|
|
23fe427cbc
|
Fixes for Salmonella
|
2022-12-17 14:31:33 +01:00 |
|
|
|
5f3a7694aa
|
microorganisms update, added Salmonella groups
|
2022-12-16 16:10:43 +01:00 |
|
|
|
8da2467209
|
updated taxonomy
|
2022-12-12 00:14:56 +01:00 |
|
|
|
eed1c14b96
|
website update
|
2022-12-11 11:44:29 +01:00 |
|
|
|
56dad34e68
|
update prevalence with new phyla
|
2022-12-09 13:37:08 +01:00 |
|
|
|
f6862a139d
|
expert rules 12.0
|
2022-11-14 15:20:39 +01:00 |
|
|
|
7ca44fb756
|
cleanup and new intro logo
|
2022-11-13 13:44:25 +01:00 |
|
Dr. Matthijs Berends
|
496c08d851
|
Implement extensive support for antiviral agents support (#77)
|
2022-11-13 08:46:10 +01:00 |
|
