dr. M.S. (Matthijs) Berends
7a4628b73f
Added C. freundii complex and Y. pseudotuberculosis complex
2023-07-14 10:49:06 +02:00
dr. M.S. (Matthijs) Berends
e1b4f99f4f
breakpoints fixes
2023-07-12 15:20:04 +01:00
dr. M.S. (Matthijs) Berends
0c46f61260
MO group fixes
2023-07-12 15:04:48 +01:00
dr. M.S. (Matthijs) Berends
7cd9ca274c
add strep groups to ABCG
2023-07-12 11:41:25 +01:00
dr. M.S. (Matthijs) Berends
5e1221bceb
unit test
2023-07-10 19:04:12 +02:00
dr. M.S. (Matthijs) Berends
70c601ca11
breakpoints UTI interpretation fix
2023-07-10 13:41:52 +02:00
dr. M.S. (Matthijs) Berends
acb534102b
new species groups, updated clinical breakpoints
2023-07-08 17:30:05 +02:00
dr. M.S. (Matthijs) Berends
2d97cca6d9
fix reference_df endless loop
2023-06-26 13:52:02 +02:00
Dr. Matthijs Berends
f065945d7b
Update clinical breakpoints and fix some as.mo() bugs ( #117 )
...
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102 , fixes #112 , fixes #113 , fixes #114 , fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
dr. M.S. (Matthijs) Berends
9591688811
documentation update
2023-05-27 10:39:22 +02:00
dr. M.S. (Matthijs) Berends
8179092c57
add XPT files for SAS software
2023-05-12 10:07:55 +02:00
dr. M.S. (Matthijs) Berends
91fa73dedf
add oxygen tolerance
2023-05-11 21:56:27 +02:00
dr. M.S. (Matthijs) Berends
bf08d136a0
fix coercing NA to custom codes, fixes #107
2023-05-08 13:04:18 +02:00
dr. M.S. (Matthijs) Berends
9148a2dcf4
fix mo_rank() for 'unknown' MOs
2023-04-20 15:20:41 +02:00
dr. M.S. (Matthijs) Berends
02322ac2ee
Fix PK/PD breakpoints
2023-04-19 00:31:31 +02:00
dr. M.S. (Matthijs) Berends
cabffb22fd
anaerobic codes
2023-04-17 11:26:19 +02:00
dr. M.S. (Matthijs) Berends
1a02d302d4
Fix translatable strings
2023-04-15 09:32:13 +02:00
dr. M.S. (Matthijs) Berends
ed70f95380
Fix clinical breakpoints
2023-04-14 23:14:34 +02:00
dr. M.S. (Matthijs) Berends
147f9112e9
Fix some WHONET codes
2023-04-14 11:12:26 +02:00
dr. M.S. (Matthijs) Berends
c28cfa3a77
fix documentation
2023-03-16 08:55:37 +01:00
dr. M.S. (Matthijs) Berends
262598b8d7
support for old rsi arguments
2023-03-11 14:24:34 +01:00
dr. M.S. (Matthijs) Berends
4416394e10
website update
2023-02-26 21:26:58 +01:00
dr. M.S. (Matthijs) Berends
2c5a9bb622
new relative episode determination in get_episode(), fix for plotting disk/MIC values
2023-02-24 17:06:30 +01:00
dr. M.S. (Matthijs) Berends
049baf0a71
fix for antibiograms on R < 3.5
2023-02-24 09:43:10 +01:00
dr. M.S. (Matthijs) Berends
e70f2cd32c
knitr format
2023-02-23 16:27:40 +01:00
dr. M.S. (Matthijs) Berends
dad25302f2
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
dr. M.S. (Matthijs) Berends
45a9697c84
unit tests
2023-02-12 17:10:48 +01:00
dr. M.S. (Matthijs) Berends
c51fb24363
pm_bind_rows
2023-02-11 22:28:48 +01:00
dr. M.S. (Matthijs) Berends
b146de6d7f
fix for bind_rows2, added 4 langs
2023-02-11 21:57:12 +01:00
dr. M.S. (Matthijs) Berends
bc434db835
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
dr. M.S. (Matthijs) Berends
aa48c6bf53
pm fixes
2023-02-08 16:51:41 +01:00
dr. M.S. (Matthijs) Berends
822e9de82c
pm update, unit test fix?
2023-02-08 13:48:06 +01:00
dr. M.S. (Matthijs) Berends
9e99e66f01
use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
dr. M.S. (Matthijs) Berends
19fd0ef121
sort sir history
2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR
2023-01-21 23:47:20 +01:00
dr. M.S. (Matthijs) Berends
4801a6067e
unit tests
2023-01-06 11:22:02 +01:00
dr. M.S. (Matthijs) Berends
a98d0d75ea
styler dep
2023-01-05 14:46:44 +01:00
dr. M.S. (Matthijs) Berends
f619fb683b
support new mo codes
2022-12-27 15:16:15 +01:00
dr. M.S. (Matthijs) Berends
6f4bb603ec
unit tests
2022-12-20 22:18:50 +01:00
dr. M.S. (Matthijs) Berends
f0a2cdbf5e
update mo algorithm
2022-12-20 16:14:04 +01:00
dr. M.S. (Matthijs) Berends
b1b7534c78
incorporate Bartlett et al (2022)
2022-12-19 15:32:41 +01:00
dr. M.S. (Matthijs) Berends
23fe427cbc
Fixes for Salmonella
2022-12-17 14:31:33 +01:00
dr. M.S. (Matthijs) Berends
5f3a7694aa
microorganisms update, added Salmonella groups
2022-12-16 16:10:43 +01:00
dr. M.S. (Matthijs) Berends
8da2467209
updated taxonomy
2022-12-12 00:14:56 +01:00
dr. M.S. (Matthijs) Berends
eed1c14b96
website update
2022-12-11 11:44:29 +01:00
dr. M.S. (Matthijs) Berends
56dad34e68
update prevalence with new phyla
2022-12-09 13:37:08 +01:00
dr. M.S. (Matthijs) Berends
f6862a139d
expert rules 12.0
2022-11-14 15:20:39 +01:00
dr. M.S. (Matthijs) Berends
7ca44fb756
cleanup and new intro logo
2022-11-13 13:44:25 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support ( #77 )
2022-11-13 08:46:10 +01:00
dr. M.S. (Matthijs) Berends
9444ed6d1d
fix antibiotics error
2022-10-30 21:05:46 +01:00
