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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 10:46:12 +01:00
Commit Graph

927 Commits

Author SHA1 Message Date
ed70f95380 Fix clinical breakpoints 2023-04-14 23:14:34 +02:00
147f9112e9 Fix some WHONET codes 2023-04-14 11:12:26 +02:00
549790c2a6 website 2023-03-20 21:59:50 +01:00
c28cfa3a77 fix documentation 2023-03-16 08:55:37 +01:00
dd7cc86485 help page %like% 2023-03-14 19:49:50 +01:00
80cfc503c2 check for 2.0 2023-03-12 13:02:37 +01:00
9179e98e12 patient ID in first isolate 2023-03-11 17:13:19 +01:00
7ad8635994 documentation for 'data.table' AB selectors 2023-03-11 16:54:02 +01:00
45e840c02f update NEWS 2023-03-11 14:43:31 +01:00
262598b8d7 support for old rsi arguments 2023-03-11 14:24:34 +01:00
4416394e10 website update 2023-02-26 21:26:58 +01:00
1d3d7d40bc get episode unit tests 2023-02-24 19:54:56 +01:00
2c5a9bb622 new relative episode determination in get_episode(), fix for plotting disk/MIC values 2023-02-24 17:06:30 +01:00
92029c9e95 remove note 2023-02-24 10:31:36 +01:00
049baf0a71 fix for antibiograms on R < 3.5 2023-02-24 09:43:10 +01:00
e70f2cd32c knitr format 2023-02-23 16:27:40 +01:00
a84101db08 N for only 1 AB in 2023-02-22 16:26:13 +01:00
551aaf6517 auto-remove missing ABs in antibiogram() 2023-02-22 16:00:52 +01:00
c2cfc5ef84 fix for antibiogram(), transform WHONET data set to sir 2023-02-22 15:40:05 +01:00
dad25302f2 make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
8d902410f9 unit tests 2023-02-18 14:56:06 +01:00
8dcf101a9c website 2023-02-18 13:08:08 +01:00
ba255ddb00 website 2023-02-18 11:57:17 +01:00
e890360986 website syntax update 2023-02-17 11:39:00 +01:00
714a048fa9 italicise antibiogram 2023-02-17 09:42:51 +01:00
db2830124f fix for using dplyr::select() 2023-02-15 19:48:34 +01:00
a82552dd88 fix for group selections 2023-02-15 17:37:49 +01:00
ef716f6ee3 doc fix 2023-02-15 17:16:40 +01:00
6016547f1f support for dplyr 1.1.0 2023-02-15 17:02:10 +01:00
a4cd38c433 fix for R < 3.2, expect_warning() on hold 2023-02-14 10:41:01 +01:00
3396236eef unit test fixes 2023-02-13 16:56:25 +01:00
b6d2b1398d Fix for antibiogram() in R <=3.4 2023-02-13 10:21:43 +01:00
45a9697c84 unit tests 2023-02-12 17:10:48 +01:00
68abb00c59 add include_screening to as.sir() 2023-02-12 15:09:54 +01:00
c740967cf2 fix for binding rows 2023-02-12 11:20:14 +01:00
c51fb24363 pm_bind_rows 2023-02-11 22:28:48 +01:00
b146de6d7f fix for bind_rows2, added 4 langs 2023-02-11 21:57:12 +01:00
2007c3eef3 bind_rows 2023-02-10 17:09:48 +01:00
03294c7901 fix for Salmonella group A, unit tests 2023-02-10 16:47:25 +01:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
70a7ba0206 fix first isolate 2023-02-10 13:13:17 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
aa48c6bf53 pm fixes 2023-02-08 16:51:41 +01:00
822e9de82c pm update, unit test fix? 2023-02-08 13:48:06 +01:00
75a4c1ef3e fixes2 2023-02-06 14:34:38 +01:00
f7dd890b79 fixes 2023-02-06 12:38:52 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
4b133d4c96 unit tests 2023-01-30 17:24:03 +01:00
89a577805f prelim fix for g.test 2023-01-30 12:26:48 +01:00
7b00b4f34a unit tests 2023-01-24 14:52:15 +01:00