dr. M.S. (Matthijs) Berends
147f9112e9
Fix some WHONET codes
2023-04-14 11:12:26 +02:00
dr. M.S. (Matthijs) Berends
c28cfa3a77
fix documentation
2023-03-16 08:55:37 +01:00
dr. M.S. (Matthijs) Berends
262598b8d7
support for old rsi arguments
2023-03-11 14:24:34 +01:00
dr. M.S. (Matthijs) Berends
4416394e10
website update
2023-02-26 21:26:58 +01:00
dr. M.S. (Matthijs) Berends
2c5a9bb622
new relative episode determination in get_episode(), fix for plotting disk/MIC values
2023-02-24 17:06:30 +01:00
dr. M.S. (Matthijs) Berends
049baf0a71
fix for antibiograms on R < 3.5
2023-02-24 09:43:10 +01:00
dr. M.S. (Matthijs) Berends
e70f2cd32c
knitr format
2023-02-23 16:27:40 +01:00
dr. M.S. (Matthijs) Berends
dad25302f2
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
dr. M.S. (Matthijs) Berends
45a9697c84
unit tests
2023-02-12 17:10:48 +01:00
dr. M.S. (Matthijs) Berends
c51fb24363
pm_bind_rows
2023-02-11 22:28:48 +01:00
dr. M.S. (Matthijs) Berends
b146de6d7f
fix for bind_rows2, added 4 langs
2023-02-11 21:57:12 +01:00
dr. M.S. (Matthijs) Berends
bc434db835
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
dr. M.S. (Matthijs) Berends
aa48c6bf53
pm fixes
2023-02-08 16:51:41 +01:00
dr. M.S. (Matthijs) Berends
822e9de82c
pm update, unit test fix?
2023-02-08 13:48:06 +01:00
dr. M.S. (Matthijs) Berends
9e99e66f01
use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
dr. M.S. (Matthijs) Berends
19fd0ef121
sort sir history
2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR
2023-01-21 23:47:20 +01:00
dr. M.S. (Matthijs) Berends
4801a6067e
unit tests
2023-01-06 11:22:02 +01:00
dr. M.S. (Matthijs) Berends
a98d0d75ea
styler dep
2023-01-05 14:46:44 +01:00
dr. M.S. (Matthijs) Berends
f619fb683b
support new mo codes
2022-12-27 15:16:15 +01:00
dr. M.S. (Matthijs) Berends
6f4bb603ec
unit tests
2022-12-20 22:18:50 +01:00
dr. M.S. (Matthijs) Berends
f0a2cdbf5e
update mo algorithm
2022-12-20 16:14:04 +01:00
dr. M.S. (Matthijs) Berends
b1b7534c78
incorporate Bartlett et al (2022)
2022-12-19 15:32:41 +01:00
dr. M.S. (Matthijs) Berends
23fe427cbc
Fixes for Salmonella
2022-12-17 14:31:33 +01:00
dr. M.S. (Matthijs) Berends
5f3a7694aa
microorganisms update, added Salmonella groups
2022-12-16 16:10:43 +01:00
dr. M.S. (Matthijs) Berends
8da2467209
updated taxonomy
2022-12-12 00:14:56 +01:00
dr. M.S. (Matthijs) Berends
eed1c14b96
website update
2022-12-11 11:44:29 +01:00
dr. M.S. (Matthijs) Berends
56dad34e68
update prevalence with new phyla
2022-12-09 13:37:08 +01:00
dr. M.S. (Matthijs) Berends
f6862a139d
expert rules 12.0
2022-11-14 15:20:39 +01:00
dr. M.S. (Matthijs) Berends
7ca44fb756
cleanup and new intro logo
2022-11-13 13:44:25 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support ( #77 )
2022-11-13 08:46:10 +01:00
dr. M.S. (Matthijs) Berends
9444ed6d1d
fix antibiotics error
2022-10-30 21:05:46 +01:00
dr. M.S. (Matthijs) Berends
d40e0ef20b
completely updated antibiotics
2022-10-30 14:31:45 +01:00
dr. M.S. (Matthijs) Berends
3d9faf89cf
ATC and DDD update
2022-10-29 19:01:23 +02:00
dr. M.S. (Matthijs) Berends
fa620f8ebd
fix export of lists in antibiotics and antivirals
2022-10-29 16:17:48 +02:00
dr. M.S. (Matthijs) Berends
afdc48db1e
fix txt export of microorganisms
2022-10-29 16:08:18 +02:00
dr. M.S. (Matthijs) Berends
6ad7857d39
fix missing R breakpoints
2022-10-29 14:15:23 +02:00
dr. M.S. (Matthijs) Berends
c2801ba7a1
new rsi_translation
2022-10-22 22:00:15 +02:00
dr. M.S. (Matthijs) Berends
76bcd3528c
move object assignment to AMR_env
2022-10-14 13:02:50 +02:00
dr. M.S. (Matthijs) Berends
b753b84128
fix for mo type translation
2022-10-06 12:11:51 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
dr. M.S. (Matthijs) Berends
e7af5fc716
fix AMR vignette
2022-08-28 22:38:08 +02:00
dr. M.S. (Matthijs) Berends
71db246d5c
unit test fix
2022-08-28 19:17:12 +02:00
dr. M.S. (Matthijs) Berends
f781998904
amoxicillin interpretation fix
2022-08-28 11:17:53 +02:00
dr. M.S. (Matthijs) Berends
4d050aef7c
styled, unit test fix
2022-08-28 10:31:50 +02:00
dr. M.S. (Matthijs) Berends
4cb1db4554
data export
2022-08-27 20:51:26 +02:00
dr. M.S. (Matthijs) Berends
303d61b473
new tibble export
2022-08-27 20:49:37 +02:00
dr. M.S. (Matthijs) Berends
3cef2ea286
restore LFS
2022-08-26 23:21:31 +02:00
dr. M.S. (Matthijs) Berends
3864ab2fb8
Feather and Parquet files
2022-08-26 22:25:15 +02:00
dr. M.S. (Matthijs) Berends
4da32e3d40
set up Git LFS for large files
2022-08-26 14:02:08 +02:00
