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262598b8d7
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support for old rsi arguments
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2023-03-11 14:24:34 +01:00 |
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4416394e10
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website update
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2023-02-26 21:26:58 +01:00 |
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2c5a9bb622
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new relative episode determination in get_episode(), fix for plotting disk/MIC values
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2023-02-24 17:06:30 +01:00 |
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049baf0a71
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fix for antibiograms on R < 3.5
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2023-02-24 09:43:10 +01:00 |
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e70f2cd32c
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knitr format
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2023-02-23 16:27:40 +01:00 |
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dad25302f2
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make rsi work in more cases, documentation update
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2023-02-22 14:38:57 +01:00 |
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45a9697c84
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unit tests
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2023-02-12 17:10:48 +01:00 |
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c51fb24363
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pm_bind_rows
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2023-02-11 22:28:48 +01:00 |
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b146de6d7f
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fix for bind_rows2, added 4 langs
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2023-02-11 21:57:12 +01:00 |
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bc434db835
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bring back antibiogram(), without deps
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2023-02-10 16:18:00 +01:00 |
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aa48c6bf53
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pm fixes
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2023-02-08 16:51:41 +01:00 |
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822e9de82c
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pm update, unit test fix?
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2023-02-08 13:48:06 +01:00 |
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9e99e66f01
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use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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19fd0ef121
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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4801a6067e
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unit tests
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2023-01-06 11:22:02 +01:00 |
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a98d0d75ea
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styler dep
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2023-01-05 14:46:44 +01:00 |
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f619fb683b
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
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6f4bb603ec
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unit tests
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2022-12-20 22:18:50 +01:00 |
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f0a2cdbf5e
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update mo algorithm
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2022-12-20 16:14:04 +01:00 |
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b1b7534c78
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incorporate Bartlett et al (2022)
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2022-12-19 15:32:41 +01:00 |
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23fe427cbc
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Fixes for Salmonella
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2022-12-17 14:31:33 +01:00 |
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5f3a7694aa
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microorganisms update, added Salmonella groups
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2022-12-16 16:10:43 +01:00 |
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8da2467209
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updated taxonomy
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2022-12-12 00:14:56 +01:00 |
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eed1c14b96
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website update
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2022-12-11 11:44:29 +01:00 |
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56dad34e68
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update prevalence with new phyla
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2022-12-09 13:37:08 +01:00 |
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f6862a139d
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expert rules 12.0
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2022-11-14 15:20:39 +01:00 |
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7ca44fb756
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cleanup and new intro logo
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2022-11-13 13:44:25 +01:00 |
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Dr. Matthijs Berends
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496c08d851
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Implement extensive support for antiviral agents support (#77)
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2022-11-13 08:46:10 +01:00 |
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9444ed6d1d
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fix antibiotics error
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2022-10-30 21:05:46 +01:00 |
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d40e0ef20b
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completely updated antibiotics
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2022-10-30 14:31:45 +01:00 |
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3d9faf89cf
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ATC and DDD update
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2022-10-29 19:01:23 +02:00 |
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fa620f8ebd
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fix export of lists in antibiotics and antivirals
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2022-10-29 16:17:48 +02:00 |
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afdc48db1e
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fix txt export of microorganisms
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2022-10-29 16:08:18 +02:00 |
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6ad7857d39
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fix missing R breakpoints
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2022-10-29 14:15:23 +02:00 |
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c2801ba7a1
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new rsi_translation
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2022-10-22 22:00:15 +02:00 |
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76bcd3528c
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move object assignment to AMR_env
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2022-10-14 13:02:50 +02:00 |
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b753b84128
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fix for mo type translation
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2022-10-06 12:11:51 +02:00 |
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Dr. Matthijs Berends
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cd2acc4a29
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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e7af5fc716
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fix AMR vignette
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2022-08-28 22:38:08 +02:00 |
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71db246d5c
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unit test fix
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2022-08-28 19:17:12 +02:00 |
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f781998904
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amoxicillin interpretation fix
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2022-08-28 11:17:53 +02:00 |
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4d050aef7c
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styled, unit test fix
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2022-08-28 10:31:50 +02:00 |
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4cb1db4554
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data export
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2022-08-27 20:51:26 +02:00 |
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303d61b473
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new tibble export
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2022-08-27 20:49:37 +02:00 |
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3cef2ea286
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restore LFS
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2022-08-26 23:21:31 +02:00 |
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3864ab2fb8
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Feather and Parquet files
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2022-08-26 22:25:15 +02:00 |
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4da32e3d40
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set up Git LFS for large files
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2022-08-26 14:02:08 +02:00 |
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7226b70c3d
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update languages
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2022-08-20 20:17:14 +02:00 |
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3f2f60ab77
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language updates
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2022-08-19 12:33:14 +02:00 |
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