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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 08:46:12 +01:00
Commit Graph

388 Commits

Author SHA1 Message Date
56dad34e68 update prevalence with new phyla 2022-12-09 13:37:08 +01:00
f6862a139d expert rules 12.0 2022-11-14 15:20:39 +01:00
7ca44fb756 cleanup and new intro logo 2022-11-13 13:44:25 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support (#77) 2022-11-13 08:46:10 +01:00
9444ed6d1d fix antibiotics error 2022-10-30 21:05:46 +01:00
d40e0ef20b completely updated antibiotics 2022-10-30 14:31:45 +01:00
3d9faf89cf ATC and DDD update 2022-10-29 19:01:23 +02:00
fa620f8ebd fix export of lists in antibiotics and antivirals 2022-10-29 16:17:48 +02:00
afdc48db1e fix txt export of microorganisms 2022-10-29 16:08:18 +02:00
6ad7857d39 fix missing R breakpoints 2022-10-29 14:15:23 +02:00
c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
76bcd3528c move object assignment to AMR_env 2022-10-14 13:02:50 +02:00
b753b84128 fix for mo type translation 2022-10-06 12:11:51 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
e7af5fc716 fix AMR vignette 2022-08-28 22:38:08 +02:00
71db246d5c unit test fix 2022-08-28 19:17:12 +02:00
f781998904 amoxicillin interpretation fix 2022-08-28 11:17:53 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
4cb1db4554 data export 2022-08-27 20:51:26 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
3cef2ea286 restore LFS 2022-08-26 23:21:31 +02:00
3864ab2fb8 Feather and Parquet files 2022-08-26 22:25:15 +02:00
4da32e3d40 set up Git LFS for large files 2022-08-26 14:02:08 +02:00
7226b70c3d update languages 2022-08-20 20:17:14 +02:00
3f2f60ab77 language updates 2022-08-19 12:33:14 +02:00
Anton Mymrikov
4b19c3dc5e
Add Ukrainian translation (#67) 2022-08-18 11:29:18 +02:00
ab97268f4c (v1.8.1.9014) add Toxoplasma 2022-08-12 23:27:15 +02:00
7f981e7778 (v1.8.1.9013) add Toxoplasma 2022-06-10 13:15:23 +02:00
b84d647cac (v1.8.1.9012) update prevalence of some genera 2022-06-03 13:28:55 +02:00
1b84564d36 (v1.8.1.9011) update prevalence of some genera 2022-06-03 12:43:25 +02:00
70a07bad39 (v1.8.1.9010) random when pkg not loaded 2022-05-16 12:52:50 +02:00
2c5bc73ed6 (v1.8.1.9009) random when pkg not loaded 2022-05-16 09:29:46 +02:00
58ed15e7ac (v1.8.1.9008) website update 2022-05-11 10:26:58 +02:00
6de5375256 (v1.8.1.9007) website update 2022-05-11 10:10:31 +02:00
859224e9d0 (v1.8.1.9006) added EUCAST 2022 and CLSI 2022 2022-05-10 21:34:30 +02:00
680e8e7a41 (v1.8.1.9005) as.rsi() fix for EUCAST 2022-05-10 17:01:37 +02:00
d4e22069bc (v1.8.1.9004) fix for table() on MICs 2022-05-09 21:33:27 +02:00
1c891cc90c (v1.8.1.9003) set_mo_source() fix 2022-05-09 20:36:44 +02:00
152db9d1b5 (v1.8.1.9002) fix for table() on MICs 2022-05-09 17:08:40 +02:00
4754848e96 (v1.8.1.9001) update unit tests, fixes #53 2022-04-08 11:02:45 +02:00
7b0f1596bd (v1.8.0.9010) as.mo improvement 2022-03-15 17:35:02 +01:00
1b0983e382 (v1.8.1) prerelease 1.8.1 2022-03-14 16:36:10 +01:00
08d387b5ce (v1.8.0.9005) as.rsi() fix 2022-03-10 19:33:25 +01:00
ad82bb4ce0 (v1.8.0.9004) MIC printing in tibbles 2022-03-03 21:11:02 +01:00
dedbe92322 (v1.8.0.9003) deps update 2022-03-02 23:16:37 +01:00
3b2b2be5f8 (v1.8.0.9002) as.rsi() cleanup, more informative warnings 2022-03-02 15:38:55 +01:00
18e8525d10 (v1.8.0.9001) as.mo improvement, fixes #52 2022-02-26 21:58:23 +01:00
be792cc9eb (v1.8.0.9000) unit tests for R 3.3 2022-02-01 17:08:10 +01:00
f5dcf0ad58 v1.8.0 as accepted by CRAN 2022-01-07 16:27:13 +01:00
25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
75dac113b6 (v1.7.1.9077) skimr support only for newer R versions 2021-12-23 13:38:25 +01:00
d9274bcd0a (v1.7.1.9075) assignment operator 2021-12-14 22:59:27 +01:00
76dee66852 (v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests 2021-12-14 22:39:23 +01:00
bd4bb1d72f (v1.7.1.9073) as.rsi() fix for UTIs 2021-12-14 21:47:14 +01:00
5eef01165e (v1.7.1.9072) as.rsi() fix for UTIs 2021-12-14 12:33:29 +01:00
0cbf8f48b6 (v1.7.1.9071) rsi disk fix 2021-12-13 11:57:34 +01:00
578e7dfee9 (v1.7.1.9070) Better WHONET support 2021-12-13 10:18:28 +01:00
f90e27c1b0 (v1.7.1.9069) CLSI 2021 support 2021-12-12 11:36:58 +01:00
1e66a3daf3 (v1.7.1.9068) new logo, unit tests 2021-12-12 11:07:02 +01:00
56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
5b5f70a103 (v1.7.1.9066) mdro EUCAST v3.3 2021-12-11 15:29:30 +01:00
e0a2634f14 (v1.7.1.9065) unit tests 2021-12-11 15:13:44 +01:00
77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
e18c49ed93 (v1.7.1.9063) not_intrinsic_resistant 2021-12-09 10:48:25 +01:00
e63defe324 (v1.7.1.9062) website update 2021-12-06 11:12:30 +01:00
1fa3fc6af2 (v1.7.1.9061) bugfix set_ab_names 2021-12-05 23:21:59 +01:00
75965124ef (v1.7.1.9060) bugfix set_ab_names 2021-12-05 23:11:10 +01:00
b747036deb (v1.7.1.9059) bugfix set_ab_names 2021-12-05 22:59:06 +01:00
7965468ccd (v1.7.1.9058) vars selection for set_ab_names() 2021-12-05 22:06:45 +01:00
3abe61fd61 (v1.7.1.9057) NAs in get_episode() 2021-12-02 13:32:14 +01:00
5375f75829 (v1.7.1.9056) unit tests 2021-11-29 11:55:18 +01:00
c8698347cb (v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers 2021-11-29 10:38:38 +01:00
694cf5ba77 (v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup 2021-11-28 23:01:26 +01:00
9a2c431e16 (v1.7.1.9053) fortify() methods 2021-11-01 13:51:13 +01:00
91149d6d35 (v1.7.1.9052) eucast-update 2021-10-06 16:22:36 +02:00
37e6e35ec4 (v1.7.1.9051) updated taxonomy, updated git branch name 2021-10-06 13:23:57 +02:00
8f5e5a3fc2 (v1.7.1.9050) fix for as.mo 2021-10-05 14:00:35 +02:00
2bcf28281d (v1.7.1.9049) unit tests 2021-10-05 09:58:08 +02:00
d1b16ce641 (v1.7.1.9048) unit tests 2021-10-04 10:22:10 +02:00
9b97233be2 (v1.7.1.9046) unit tests 2021-10-03 13:50:52 +02:00
b0c84cce9c (v1.7.1.9045) unit tests 2021-09-29 20:24:02 +02:00
557ce74fd7 (v1.7.1.9044) unit tests 2021-09-29 20:13:52 +02:00
45f597cac5 (v1.7.1.9043) unit tests 2021-09-29 20:10:44 +02:00
e8d3ce05d7 (v1.7.1.9041) new GH actions, branches rename 2021-09-29 16:36:03 +02:00
93a4734b44 (v1.7.1.9040) Support for Danish 2021-09-29 12:12:35 +02:00
5f433d6e5c (v1.7.1.9039) reinitiate all units tests 2021-09-03 13:08:36 +02:00
81a1a432bd (v1.7.1.9038) dplyr grouping fix on windows? 2021-09-01 16:52:55 +02:00
bcab74fb6d (v1.7.1.9037) dplyr grouping fix on windows? 2021-08-31 17:06:44 +02:00
953dfac9e5 (v1.7.1.9036) dplyr grouping fix on windows? 2021-08-30 16:49:46 +02:00
986bd826ee (v1.7.1.9035) dplyr grouping fix on windows? 2021-08-30 15:43:12 +02:00
1daa117e9f (v1.7.1.9033) dplyr grouping fix on windows? 2021-08-30 15:01:32 +02:00
6ca6a3f6df (v1.7.1.9032) dplyr grouping fix on windows? 2021-08-30 14:17:27 +02:00
e6ce25162e (v1.7.1.9031) dplyr grouping fix on windows? 2021-08-30 14:07:46 +02:00
d6a916d70b (v1.7.1.9030) unit test 2021-08-29 23:50:45 +02:00
f0a4d29fe0 (v1.7.1.9029) unit test fix 2021-08-21 10:20:05 +02:00
e4de7f5055 (v1.7.1.9028) fix unit test 2021-08-20 00:08:31 +02:00
41f35c73cd (v1.7.1.9027) fix unit test 2021-08-19 23:56:18 +02:00
2ab21b7af3 (v1.7.1.9026) updated DDDs 2021-08-19 23:43:02 +02:00
1b62bab007 (v1.7.1.9025) unit tests 2021-08-18 23:19:38 +02:00
a44283f998 (v1.7.1.9024) unit tests 2021-08-17 14:34:11 +02:00