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9e99e66f01
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use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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19fd0ef121
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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4801a6067e
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unit tests
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2023-01-06 11:22:02 +01:00 |
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a98d0d75ea
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styler dep
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2023-01-05 14:46:44 +01:00 |
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f619fb683b
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support new mo codes
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2022-12-27 15:16:15 +01:00 |
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6f4bb603ec
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unit tests
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2022-12-20 22:18:50 +01:00 |
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f0a2cdbf5e
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update mo algorithm
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2022-12-20 16:14:04 +01:00 |
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b1b7534c78
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incorporate Bartlett et al (2022)
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2022-12-19 15:32:41 +01:00 |
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23fe427cbc
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Fixes for Salmonella
|
2022-12-17 14:31:33 +01:00 |
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5f3a7694aa
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microorganisms update, added Salmonella groups
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2022-12-16 16:10:43 +01:00 |
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8da2467209
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updated taxonomy
|
2022-12-12 00:14:56 +01:00 |
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eed1c14b96
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website update
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2022-12-11 11:44:29 +01:00 |
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56dad34e68
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update prevalence with new phyla
|
2022-12-09 13:37:08 +01:00 |
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f6862a139d
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expert rules 12.0
|
2022-11-14 15:20:39 +01:00 |
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7ca44fb756
|
cleanup and new intro logo
|
2022-11-13 13:44:25 +01:00 |
|
Dr. Matthijs Berends
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496c08d851
|
Implement extensive support for antiviral agents support (#77)
|
2022-11-13 08:46:10 +01:00 |
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9444ed6d1d
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fix antibiotics error
|
2022-10-30 21:05:46 +01:00 |
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d40e0ef20b
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completely updated antibiotics
|
2022-10-30 14:31:45 +01:00 |
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3d9faf89cf
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ATC and DDD update
|
2022-10-29 19:01:23 +02:00 |
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fa620f8ebd
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fix export of lists in antibiotics and antivirals
|
2022-10-29 16:17:48 +02:00 |
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afdc48db1e
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fix txt export of microorganisms
|
2022-10-29 16:08:18 +02:00 |
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6ad7857d39
|
fix missing R breakpoints
|
2022-10-29 14:15:23 +02:00 |
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c2801ba7a1
|
new rsi_translation
|
2022-10-22 22:00:15 +02:00 |
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76bcd3528c
|
move object assignment to AMR_env
|
2022-10-14 13:02:50 +02:00 |
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b753b84128
|
fix for mo type translation
|
2022-10-06 12:11:51 +02:00 |
|
Dr. Matthijs Berends
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cd2acc4a29
|
New mo algorithm, prepare for 2.0
|
2022-10-05 09:12:22 +02:00 |
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e7af5fc716
|
fix AMR vignette
|
2022-08-28 22:38:08 +02:00 |
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71db246d5c
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unit test fix
|
2022-08-28 19:17:12 +02:00 |
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f781998904
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amoxicillin interpretation fix
|
2022-08-28 11:17:53 +02:00 |
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4d050aef7c
|
styled, unit test fix
|
2022-08-28 10:31:50 +02:00 |
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4cb1db4554
|
data export
|
2022-08-27 20:51:26 +02:00 |
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303d61b473
|
new tibble export
|
2022-08-27 20:49:37 +02:00 |
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3cef2ea286
|
restore LFS
|
2022-08-26 23:21:31 +02:00 |
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3864ab2fb8
|
Feather and Parquet files
|
2022-08-26 22:25:15 +02:00 |
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4da32e3d40
|
set up Git LFS for large files
|
2022-08-26 14:02:08 +02:00 |
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7226b70c3d
|
update languages
|
2022-08-20 20:17:14 +02:00 |
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3f2f60ab77
|
language updates
|
2022-08-19 12:33:14 +02:00 |
|
Anton Mymrikov
|
4b19c3dc5e
|
Add Ukrainian translation (#67)
|
2022-08-18 11:29:18 +02:00 |
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ab97268f4c
|
(v1.8.1.9014) add Toxoplasma
|
2022-08-12 23:27:15 +02:00 |
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7f981e7778
|
(v1.8.1.9013) add Toxoplasma
|
2022-06-10 13:15:23 +02:00 |
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b84d647cac
|
(v1.8.1.9012) update prevalence of some genera
|
2022-06-03 13:28:55 +02:00 |
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1b84564d36
|
(v1.8.1.9011) update prevalence of some genera
|
2022-06-03 12:43:25 +02:00 |
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70a07bad39
|
(v1.8.1.9010) random when pkg not loaded
|
2022-05-16 12:52:50 +02:00 |
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2c5bc73ed6
|
(v1.8.1.9009) random when pkg not loaded
|
2022-05-16 09:29:46 +02:00 |
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58ed15e7ac
|
(v1.8.1.9008) website update
|
2022-05-11 10:26:58 +02:00 |
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6de5375256
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(v1.8.1.9007) website update
|
2022-05-11 10:10:31 +02:00 |
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859224e9d0
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(v1.8.1.9006) added EUCAST 2022 and CLSI 2022
|
2022-05-10 21:34:30 +02:00 |
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680e8e7a41
|
(v1.8.1.9005) as.rsi() fix for EUCAST
|
2022-05-10 17:01:37 +02:00 |
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d4e22069bc
|
(v1.8.1.9004) fix for table() on MICs
|
2022-05-09 21:33:27 +02:00 |
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1c891cc90c
|
(v1.8.1.9003) set_mo_source() fix
|
2022-05-09 20:36:44 +02:00 |
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152db9d1b5
|
(v1.8.1.9002) fix for table() on MICs
|
2022-05-09 17:08:40 +02:00 |
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4754848e96
|
(v1.8.1.9001) update unit tests, fixes #53
|
2022-04-08 11:02:45 +02:00 |
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7b0f1596bd
|
(v1.8.0.9010) as.mo improvement
|
2022-03-15 17:35:02 +01:00 |
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1b0983e382
|
(v1.8.1) prerelease 1.8.1
|
2022-03-14 16:36:10 +01:00 |
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08d387b5ce
|
(v1.8.0.9005) as.rsi() fix
|
2022-03-10 19:33:25 +01:00 |
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ad82bb4ce0
|
(v1.8.0.9004) MIC printing in tibbles
|
2022-03-03 21:11:02 +01:00 |
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dedbe92322
|
(v1.8.0.9003) deps update
|
2022-03-02 23:16:37 +01:00 |
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3b2b2be5f8
|
(v1.8.0.9002) as.rsi() cleanup, more informative warnings
|
2022-03-02 15:38:55 +01:00 |
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18e8525d10
|
(v1.8.0.9001) as.mo improvement, fixes #52
|
2022-02-26 21:58:23 +01:00 |
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be792cc9eb
|
(v1.8.0.9000) unit tests for R 3.3
|
2022-02-01 17:08:10 +01:00 |
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f5dcf0ad58
|
v1.8.0 as accepted by CRAN
|
2022-01-07 16:27:13 +01:00 |
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25cef46c59
|
(v1.8.0) prerelease 1.8.0
|
2021-12-23 18:56:28 +01:00 |
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75dac113b6
|
(v1.7.1.9077) skimr support only for newer R versions
|
2021-12-23 13:38:25 +01:00 |
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d9274bcd0a
|
(v1.7.1.9075) assignment operator
|
2021-12-14 22:59:27 +01:00 |
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|
76dee66852
|
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
|
2021-12-14 22:39:23 +01:00 |
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bd4bb1d72f
|
(v1.7.1.9073) as.rsi() fix for UTIs
|
2021-12-14 21:47:14 +01:00 |
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5eef01165e
|
(v1.7.1.9072) as.rsi() fix for UTIs
|
2021-12-14 12:33:29 +01:00 |
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0cbf8f48b6
|
(v1.7.1.9071) rsi disk fix
|
2021-12-13 11:57:34 +01:00 |
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578e7dfee9
|
(v1.7.1.9070) Better WHONET support
|
2021-12-13 10:18:28 +01:00 |
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f90e27c1b0
|
(v1.7.1.9069) CLSI 2021 support
|
2021-12-12 11:36:58 +01:00 |
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1e66a3daf3
|
(v1.7.1.9068) new logo, unit tests
|
2021-12-12 11:07:02 +01:00 |
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56f1ce328a
|
(v1.7.1.9067) Support for Swedish and Russian
|
2021-12-12 09:42:03 +01:00 |
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5b5f70a103
|
(v1.7.1.9066) mdro EUCAST v3.3
|
2021-12-11 15:29:30 +01:00 |
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e0a2634f14
|
(v1.7.1.9065) unit tests
|
2021-12-11 15:13:44 +01:00 |
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77ba4318ea
|
(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
|
2021-12-11 13:41:31 +01:00 |
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e18c49ed93
|
(v1.7.1.9063) not_intrinsic_resistant
|
2021-12-09 10:48:25 +01:00 |
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|
e63defe324
|
(v1.7.1.9062) website update
|
2021-12-06 11:12:30 +01:00 |
|
|
|
1fa3fc6af2
|
(v1.7.1.9061) bugfix set_ab_names
|
2021-12-05 23:21:59 +01:00 |
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|
75965124ef
|
(v1.7.1.9060) bugfix set_ab_names
|
2021-12-05 23:11:10 +01:00 |
|
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|
b747036deb
|
(v1.7.1.9059) bugfix set_ab_names
|
2021-12-05 22:59:06 +01:00 |
|
|
|
7965468ccd
|
(v1.7.1.9058) vars selection for set_ab_names()
|
2021-12-05 22:06:45 +01:00 |
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3abe61fd61
|
(v1.7.1.9057) NAs in get_episode()
|
2021-12-02 13:32:14 +01:00 |
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5375f75829
|
(v1.7.1.9056) unit tests
|
2021-11-29 11:55:18 +01:00 |
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c8698347cb
|
(v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers
|
2021-11-29 10:38:38 +01:00 |
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|
694cf5ba77
|
(v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup
|
2021-11-28 23:01:26 +01:00 |
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9a2c431e16
|
(v1.7.1.9053) fortify() methods
|
2021-11-01 13:51:13 +01:00 |
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91149d6d35
|
(v1.7.1.9052) eucast-update
|
2021-10-06 16:22:36 +02:00 |
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37e6e35ec4
|
(v1.7.1.9051) updated taxonomy, updated git branch name
|
2021-10-06 13:23:57 +02:00 |
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|
8f5e5a3fc2
|
(v1.7.1.9050) fix for as.mo
|
2021-10-05 14:00:35 +02:00 |
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|
2bcf28281d
|
(v1.7.1.9049) unit tests
|
2021-10-05 09:58:08 +02:00 |
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d1b16ce641
|
(v1.7.1.9048) unit tests
|
2021-10-04 10:22:10 +02:00 |
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9b97233be2
|
(v1.7.1.9046) unit tests
|
2021-10-03 13:50:52 +02:00 |
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b0c84cce9c
|
(v1.7.1.9045) unit tests
|
2021-09-29 20:24:02 +02:00 |
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557ce74fd7
|
(v1.7.1.9044) unit tests
|
2021-09-29 20:13:52 +02:00 |
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45f597cac5
|
(v1.7.1.9043) unit tests
|
2021-09-29 20:10:44 +02:00 |
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e8d3ce05d7
|
(v1.7.1.9041) new GH actions, branches rename
|
2021-09-29 16:36:03 +02:00 |
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93a4734b44
|
(v1.7.1.9040) Support for Danish
|
2021-09-29 12:12:35 +02:00 |
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|
5f433d6e5c
|
(v1.7.1.9039) reinitiate all units tests
|
2021-09-03 13:08:36 +02:00 |
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|
81a1a432bd
|
(v1.7.1.9038) dplyr grouping fix on windows?
|
2021-09-01 16:52:55 +02:00 |
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